Wall clock time and date at job start Tue Mar 31 2020 18:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00096 * 2 1 4 4 C 1.46896 * 111.00500 * 123.95637 * 2 1 3 5 5 C 1.53002 * 109.47035 * 66.04739 * 4 2 1 6 6 O 1.42905 * 109.47079 * 64.99813 * 5 4 2 7 7 C 1.35905 * 116.99842 * 180.02562 * 6 5 4 8 8 C 1.38729 * 120.05486 * 359.72976 * 7 6 5 9 9 C 1.38146 * 119.94070 * 179.69866 * 8 7 6 10 10 C 1.38261 * 120.05656 * 0.59396 * 9 8 7 11 11 C 1.50703 * 119.94592 * 179.69684 * 10 9 8 12 12 C 1.52997 * 109.47456 * 269.98369 * 11 10 9 13 13 N 1.46498 * 109.46874 * 179.97438 * 12 11 10 14 14 C 1.34785 * 119.99668 * 179.97438 * 13 12 11 15 15 O 1.21587 * 119.99924 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99616 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99670 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47111 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00072 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99984 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47279 * 60.00417 * 22 20 18 24 24 H 1.48505 * 109.47042 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47192 * 300.00109 * 22 20 18 26 26 C 1.38262 * 120.11048 * 359.68455 * 10 9 8 27 27 C 1.38145 * 120.05938 * 0.02562 * 26 10 9 28 28 H 1.09008 * 109.46792 * 296.03757 * 1 2 3 29 29 H 1.08991 * 109.47642 * 56.04087 * 1 2 3 30 30 H 1.09002 * 109.46961 * 176.04760 * 1 2 3 31 31 H 1.09000 * 109.47492 * 183.95667 * 3 2 1 32 32 H 1.09001 * 109.47355 * 303.96354 * 3 2 1 33 33 H 1.09005 * 109.46556 * 63.95469 * 3 2 1 34 34 H 1.08997 * 109.47137 * 306.04919 * 4 2 1 35 35 H 1.09005 * 109.47283 * 186.04449 * 4 2 1 36 36 H 1.09004 * 109.46930 * 305.00039 * 5 4 2 37 37 H 1.09000 * 109.47312 * 184.99983 * 5 4 2 38 38 H 1.08000 * 120.03286 * 359.97438 * 8 7 6 39 39 H 1.08005 * 119.97194 * 180.27359 * 9 8 7 40 40 H 1.09002 * 109.46995 * 29.98383 * 11 10 9 41 41 H 1.09006 * 109.46988 * 149.97764 * 11 10 9 42 42 H 1.09002 * 109.47030 * 299.99992 * 12 11 10 43 43 H 1.09001 * 109.47078 * 59.99874 * 12 11 10 44 44 H 0.97000 * 120.00558 * 0.02562 * 13 12 11 45 45 H 0.96998 * 120.00370 * 0.02562 * 16 14 13 46 46 H 1.09001 * 109.47257 * 299.99762 * 17 16 14 47 47 H 1.08999 * 109.47644 * 60.00389 * 17 16 14 48 48 H 0.96994 * 120.00020 * 180.02562 * 21 20 18 49 49 H 1.08008 * 119.97547 * 180.02562 * 26 10 9 50 50 H 1.07990 * 120.03151 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 8 2.2956 -2.7695 -0.1803 7 6 2.0775 -4.0786 -0.4731 8 6 1.2459 -4.8417 0.3335 9 6 1.0209 -6.1705 0.0302 10 6 1.6333 -6.7432 -1.0692 11 6 1.3914 -8.1948 -1.3939 12 6 2.4362 -9.0574 -0.6833 13 7 2.2006 -10.4685 -0.9985 14 6 3.0045 -11.4182 -0.4801 15 8 3.9248 -11.1036 0.2496 16 7 2.7874 -12.7164 -0.7697 17 6 3.6607 -13.7486 -0.2057 18 6 3.2073 -15.1049 -0.6811 19 1 2.3538 -15.1896 -1.3373 20 6 3.8823 -16.2377 -0.2783 21 7 4.9214 -16.1347 0.5212 22 14 3.3198 -17.9189 -0.8670 23 1 3.3842 -17.9713 -2.3497 24 1 4.2059 -18.9652 -0.2964 25 1 1.9228 -18.1569 -0.4234 26 6 2.4670 -5.9862 -1.8714 27 6 2.6906 -4.6554 -1.5758 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9165 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.5612 -0.3874 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 0.5532 -2.3389 0.8431 37 1 1.9440 -2.7965 1.8555 38 1 0.7714 -4.3963 1.1954 39 1 0.3701 -6.7640 0.6553 40 1 0.3947 -8.4810 -1.0581 41 1 1.4686 -8.3440 -2.4710 42 1 3.4330 -8.7712 -1.0191 43 1 2.3589 -8.9082 0.3937 44 1 1.4666 -10.7195 -1.5809 45 1 2.0529 -12.9673 -1.3515 46 1 4.6864 -13.5742 -0.5309 47 1 3.6131 -13.7101 0.8826 48 1 5.3964 -16.9315 0.8043 49 1 2.9440 -6.4357 -2.7300 50 1 3.3423 -4.0647 -2.2024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426448496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:50 Heat of formation + Delta-G solvation = -45.098871 kcal Electronic energy + Delta-G solvation = -26984.703886 eV Core-core repulsion = 23012.127613 eV Total energy + Delta-G solvation = -3972.576273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45246 -39.17441 -38.50629 -37.32459 -35.08262 -33.97640 -32.46085 -31.92554 -31.27035 -30.46988 -28.13943 -28.03771 -26.65811 -25.09501 -23.55251 -22.96413 -22.23380 -21.51564 -20.86533 -20.06858 -18.51852 -17.98958 -16.86210 -16.45218 -16.06617 -15.91460 -15.65588 -15.37294 -15.19508 -15.08904 -14.95697 -14.59568 -14.41820 -13.85485 -13.73358 -13.58336 -13.25634 -13.06050 -13.00135 -12.88824 -12.84454 -12.27851 -12.26426 -11.92988 -11.91959 -11.81209 -11.67619 -11.60486 -11.26187 -10.97635 -10.92802 -10.88411 -10.81558 -10.26600 -9.35800 -9.34019 -9.18435 -8.88554 -8.72193 -8.61471 -8.24400 -7.69787 -6.11446 -4.17991 1.16155 1.22774 2.88990 3.28385 3.31864 3.33892 3.37348 3.41777 3.62967 4.02856 4.31574 4.36124 4.47120 4.59118 4.62410 4.67651 4.76273 4.80937 4.82225 4.88402 4.99811 5.02900 5.07793 5.10069 5.17630 5.24367 5.24534 5.27395 5.35427 5.38454 5.42233 5.46262 5.59099 5.81774 5.98304 6.09701 6.10782 6.16985 6.42286 6.45278 6.48567 6.59645 6.93552 7.18116 7.21798 7.56999 7.60455 7.62341 7.96333 8.09580 8.81073 9.00732 9.39074 9.53532 10.98826 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.044121 B = 0.001344 C = 0.001334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.469377 B =20832.010557 C =20991.011459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.054 3.946 5 C 0.063 3.937 6 O -0.299 6.299 7 C 0.127 3.873 8 C -0.210 4.210 9 C -0.072 4.072 10 C -0.116 4.116 11 C -0.087 4.087 12 C 0.147 3.853 13 N -0.759 5.759 14 C 0.692 3.308 15 O -0.601 6.601 16 N -0.730 5.730 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.062 0.938 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 C -0.072 4.072 27 C -0.150 4.150 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.391 0.609 45 H 0.386 0.614 46 H 0.024 0.976 47 H 0.024 0.976 48 H 0.266 0.734 49 H 0.130 0.870 50 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 33.774 -2.302 35.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.013 4.013 6 O -0.212 6.212 7 C 0.082 3.918 8 C -0.229 4.229 9 C -0.090 4.090 10 C -0.117 4.117 11 C -0.124 4.124 12 C 0.022 3.978 13 N -0.417 5.417 14 C 0.391 3.609 15 O -0.480 6.480 16 N -0.382 5.382 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.090 4.090 27 C -0.168 4.168 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.224 0.776 45 H 0.218 0.782 46 H 0.042 0.958 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.148 0.852 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.497 33.834 -2.015 35.482 hybrid contribution -1.379 -0.814 0.188 1.612 sum -11.876 33.020 -1.827 35.138 Atomic orbital electron populations 1.22478 0.87340 1.02479 1.00620 1.61929 1.07954 1.13927 1.42700 1.22394 1.01050 0.88383 1.00520 1.22203 1.01819 0.91405 0.91966 1.22844 0.97053 0.93849 0.87581 1.86163 1.67167 1.22127 1.45790 1.19041 0.95008 0.83257 0.94535 1.21186 1.03895 0.95743 1.02074 1.20855 0.98227 0.94020 0.95944 1.19584 0.99816 0.95496 0.96796 1.20723 0.99676 0.90680 1.01345 1.21026 0.98130 0.79037 0.99608 1.45170 1.35322 1.05918 1.55285 1.16164 0.82374 0.81369 0.80961 1.90873 1.33506 1.81640 1.42015 1.45706 1.35367 1.04462 1.52699 1.18968 0.89193 0.83129 0.94157 1.21199 1.15053 0.90796 1.30995 0.92013 1.24941 0.94759 0.99450 0.94849 1.69971 1.19161 1.29838 1.33360 0.86477 0.78555 0.82875 0.78977 1.20106 1.21093 1.20114 1.20907 0.96437 0.92684 0.99013 1.20405 1.03406 0.95352 0.97650 0.95605 0.91096 0.91195 0.91100 0.91162 0.95696 0.92592 0.89355 0.91912 0.91514 0.85812 0.85733 0.90496 0.90389 0.91902 0.92007 0.77635 0.78210 0.95768 0.95782 0.92436 0.85213 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.33 60.06 0.56 0.66 16 2 N -0.54 -3.66 4.97 -251.26 -1.25 -4.91 16 3 C 0.02 0.12 9.57 60.07 0.57 0.70 16 4 C 0.05 0.32 5.34 -3.82 -0.02 0.30 16 5 C 0.06 0.42 4.80 37.16 0.18 0.60 16 6 O -0.30 -2.97 10.08 -19.44 -0.20 -3.17 16 7 C 0.13 1.31 6.69 -39.22 -0.26 1.05 16 8 C -0.21 -1.97 9.04 -39.43 -0.36 -2.32 16 9 C -0.07 -0.69 9.69 -39.61 -0.38 -1.08 16 10 C -0.12 -1.16 5.13 -104.60 -0.54 -1.69 16 11 C -0.09 -0.82 5.46 -27.88 -0.15 -0.97 16 12 C 0.15 1.97 5.66 -4.04 -0.02 1.94 16 13 N -0.76 -11.52 5.56 -65.23 -0.36 -11.88 16 14 C 0.69 14.74 8.57 -86.91 -0.74 13.99 16 15 O -0.60 -15.61 16.34 5.29 0.09 -15.52 16 16 N -0.73 -15.98 5.55 -66.41 -0.37 -16.35 16 17 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 18 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.07 -0.71 9.69 -39.61 -0.38 -1.09 16 27 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 28 H 0.03 0.12 8.14 -51.92 -0.42 -0.31 16 29 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.40 6.37 -51.93 -0.33 0.06 16 31 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.02 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.06 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.09 0.52 8.06 -51.93 -0.42 0.11 16 36 H 0.06 0.38 5.87 -51.93 -0.30 0.08 16 37 H 0.07 0.38 7.65 -51.93 -0.40 -0.01 16 38 H 0.12 0.91 6.30 -52.49 -0.33 0.58 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.39 4.59 8.49 -40.82 -0.35 4.25 16 45 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 50 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 414.42 15.07 6.25 6.25 Total: -1.00 -35.36 414.42 -10.85 -46.21 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.33 Total: 5.24 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -2.39 Total: 3.85 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -1.24 Total: -58.88 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.11 Total: -18.69 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.36 -10.85 -46.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.112 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds