Wall clock time and date at job start Tue Mar 31 2020 18:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00096 * 2 1 4 4 C 1.46896 * 111.00500 * 123.95637 * 2 1 3 5 5 C 1.53002 * 109.47035 * 66.04739 * 4 2 1 6 6 O 1.42905 * 109.47079 * 64.99813 * 5 4 2 7 7 C 1.35905 * 116.99842 * 180.02562 * 6 5 4 8 8 C 1.38729 * 120.05486 * 359.72976 * 7 6 5 9 9 C 1.38146 * 119.94070 * 179.69866 * 8 7 6 10 10 C 1.38261 * 120.05656 * 0.59396 * 9 8 7 11 11 C 1.50703 * 119.94592 * 179.69684 * 10 9 8 12 12 C 1.52997 * 109.47456 * 269.98369 * 11 10 9 13 13 N 1.46498 * 109.46874 * 179.97438 * 12 11 10 14 14 C 1.34785 * 119.99668 * 179.97438 * 13 12 11 15 15 O 1.21587 * 119.99924 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99616 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99670 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47111 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00072 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99984 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47279 * 60.00417 * 22 20 18 24 24 H 1.48505 * 109.47042 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47192 * 300.00109 * 22 20 18 26 26 C 1.38262 * 120.11048 * 359.68455 * 10 9 8 27 27 C 1.38145 * 120.05938 * 0.02562 * 26 10 9 28 28 H 1.09008 * 109.46792 * 296.03757 * 1 2 3 29 29 H 1.08991 * 109.47642 * 56.04087 * 1 2 3 30 30 H 1.09002 * 109.46961 * 176.04760 * 1 2 3 31 31 H 1.09000 * 109.47492 * 183.95667 * 3 2 1 32 32 H 1.09001 * 109.47355 * 303.96354 * 3 2 1 33 33 H 1.09005 * 109.46556 * 63.95469 * 3 2 1 34 34 H 1.08997 * 109.47137 * 306.04919 * 4 2 1 35 35 H 1.09005 * 109.47283 * 186.04449 * 4 2 1 36 36 H 1.09004 * 109.46930 * 305.00039 * 5 4 2 37 37 H 1.09000 * 109.47312 * 184.99983 * 5 4 2 38 38 H 1.08000 * 120.03286 * 359.97438 * 8 7 6 39 39 H 1.08005 * 119.97194 * 180.27359 * 9 8 7 40 40 H 1.09002 * 109.46995 * 29.98383 * 11 10 9 41 41 H 1.09006 * 109.46988 * 149.97764 * 11 10 9 42 42 H 1.09002 * 109.47030 * 299.99992 * 12 11 10 43 43 H 1.09001 * 109.47078 * 59.99874 * 12 11 10 44 44 H 0.97000 * 120.00558 * 0.02562 * 13 12 11 45 45 H 0.96998 * 120.00370 * 0.02562 * 16 14 13 46 46 H 1.09001 * 109.47257 * 299.99762 * 17 16 14 47 47 H 1.08999 * 109.47644 * 60.00389 * 17 16 14 48 48 H 0.96994 * 120.00020 * 180.02562 * 21 20 18 49 49 H 1.08008 * 119.97547 * 180.02562 * 26 10 9 50 50 H 1.07990 * 120.03151 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6316 -2.2426 0.9702 6 8 2.2956 -2.7695 -0.1803 7 6 2.0775 -4.0786 -0.4731 8 6 1.2459 -4.8417 0.3335 9 6 1.0209 -6.1705 0.0302 10 6 1.6333 -6.7432 -1.0692 11 6 1.3914 -8.1948 -1.3939 12 6 2.4362 -9.0574 -0.6833 13 7 2.2006 -10.4685 -0.9985 14 6 3.0045 -11.4182 -0.4801 15 8 3.9248 -11.1036 0.2496 16 7 2.7874 -12.7164 -0.7697 17 6 3.6607 -13.7486 -0.2057 18 6 3.2073 -15.1049 -0.6811 19 1 2.3538 -15.1896 -1.3373 20 6 3.8823 -16.2377 -0.2783 21 7 4.9214 -16.1347 0.5212 22 14 3.3198 -17.9189 -0.8670 23 1 3.3842 -17.9713 -2.3497 24 1 4.2059 -18.9652 -0.2964 25 1 1.9228 -18.1569 -0.4234 26 6 2.4670 -5.9862 -1.8714 27 6 2.6906 -4.6554 -1.5758 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9165 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.5612 -0.3874 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 0.5532 -2.3389 0.8431 37 1 1.9440 -2.7965 1.8555 38 1 0.7714 -4.3963 1.1954 39 1 0.3701 -6.7640 0.6553 40 1 0.3947 -8.4810 -1.0581 41 1 1.4686 -8.3440 -2.4710 42 1 3.4330 -8.7712 -1.0191 43 1 2.3589 -8.9082 0.3937 44 1 1.4666 -10.7195 -1.5809 45 1 2.0529 -12.9673 -1.3515 46 1 4.6864 -13.5742 -0.5309 47 1 3.6131 -13.7101 0.8826 48 1 5.3964 -16.9315 0.8043 49 1 2.9440 -6.4357 -2.7300 50 1 3.3423 -4.0647 -2.2024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426448496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:49 Heat of formation + Delta-G solvation = -70.965515 kcal Electronic energy + Delta-G solvation = -26985.825548 eV Core-core repulsion = 23012.127613 eV Total energy + Delta-G solvation = -3973.697935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17093 -40.79674 -39.18050 -37.91713 -36.47353 -35.86703 -34.36086 -33.05190 -32.00607 -31.07839 -29.53386 -28.52286 -28.15500 -25.64243 -24.96545 -23.85959 -23.59296 -22.21743 -21.85982 -21.44674 -19.75517 -19.16575 -18.00148 -17.41753 -17.35777 -17.16212 -16.62295 -16.53903 -16.16606 -16.00389 -15.67731 -15.63877 -15.33169 -15.28517 -14.97208 -14.78612 -14.30029 -14.09604 -14.00032 -13.79811 -13.70518 -13.42158 -13.26504 -12.96328 -12.89026 -12.68413 -12.66234 -12.43546 -12.41324 -12.36120 -12.20925 -12.10230 -11.62567 -11.52964 -11.47405 -11.22667 -10.77000 -10.24469 -9.91026 -9.54616 -9.30943 -8.98931 -8.25780 -6.42437 0.43412 0.46762 1.45298 1.49926 1.57872 1.94052 2.27930 2.28800 2.42141 2.82151 2.96960 3.09128 3.57855 3.79235 3.94155 3.96898 4.04625 4.07002 4.16281 4.20746 4.22840 4.35612 4.40794 4.45283 4.48736 4.58731 4.61577 4.65093 4.71562 4.78843 4.84344 4.97699 5.00875 5.01197 5.04957 5.16156 5.18343 5.29690 5.36265 5.43273 5.51467 5.58638 5.71499 5.73236 5.86783 5.87881 6.02335 6.05772 6.32028 6.54305 6.69412 7.27128 7.36827 7.76545 8.86472 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.044121 B = 0.001344 C = 0.001334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.469377 B =20832.010557 C =20991.011459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.564 5.564 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.058 3.942 6 O -0.316 6.316 7 C 0.117 3.883 8 C -0.214 4.214 9 C -0.078 4.078 10 C -0.128 4.128 11 C -0.070 4.070 12 C 0.147 3.853 13 N -0.731 5.731 14 C 0.688 3.312 15 O -0.652 6.652 16 N -0.722 5.722 17 C 0.284 3.716 18 C -0.555 4.555 19 H 0.085 0.915 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.986 3.014 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.262 1.262 26 C -0.077 4.077 27 C -0.166 4.166 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.413 0.587 45 H 0.406 0.594 46 H -0.016 1.016 47 H -0.015 1.015 48 H 0.268 0.732 49 H 0.142 0.858 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 33.717 -3.376 36.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.289 5.289 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.018 4.018 6 O -0.230 6.230 7 C 0.071 3.929 8 C -0.233 4.233 9 C -0.096 4.096 10 C -0.129 4.129 11 C -0.108 4.108 12 C 0.022 3.978 13 N -0.389 5.389 14 C 0.388 3.612 15 O -0.535 6.535 16 N -0.376 5.376 17 C 0.161 3.839 18 C -0.593 4.593 19 H 0.103 0.897 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.095 4.095 27 C -0.185 4.185 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.250 0.750 45 H 0.241 0.759 46 H 0.002 0.998 47 H 0.003 0.997 48 H 0.077 0.923 49 H 0.160 0.840 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.038 33.830 -3.143 36.391 hybrid contribution -0.596 -0.640 0.556 1.036 sum -13.634 33.190 -2.587 35.974 Atomic orbital electron populations 1.22467 0.86755 1.02323 1.01227 1.61925 1.08727 1.14825 1.43419 1.22396 1.00917 0.87818 1.01108 1.22219 1.01663 0.90814 0.92551 1.23054 0.97334 0.94403 0.86972 1.86145 1.67762 1.22007 1.47066 1.19239 0.95222 0.83650 0.94780 1.21409 1.03663 0.95752 1.02484 1.21119 0.98275 0.94314 0.95938 1.19689 1.00301 0.95703 0.97224 1.20609 0.98942 0.89348 1.01867 1.21155 0.99052 0.78152 0.99404 1.44904 1.34356 1.05567 1.54045 1.16373 0.82419 0.81781 0.80637 1.90840 1.35967 1.82401 1.44327 1.45276 1.35320 1.04033 1.53000 1.18407 0.88352 0.85202 0.91949 1.21583 1.15758 0.90693 1.31284 0.89714 1.26071 0.94521 1.04354 0.94615 1.70143 1.20736 1.31301 1.34855 0.85187 0.78395 0.76586 0.78897 1.18644 1.21151 1.18614 1.21110 0.96332 0.92628 0.99476 1.20593 1.03931 0.95826 0.98129 0.94599 0.90930 0.91654 0.91299 0.90879 0.94808 0.90778 0.89836 0.91193 0.90542 0.84033 0.84276 0.88594 0.88629 0.93425 0.93392 0.75038 0.75897 0.99768 0.99740 0.92273 0.84000 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.33 127.69 1.19 1.39 16 2 N -0.56 -7.19 4.97 -948.85 -4.71 -11.90 16 3 C 0.03 0.24 9.57 127.69 1.22 1.46 16 4 C 0.06 0.60 5.34 86.30 0.46 1.06 16 5 C 0.06 0.73 4.80 71.98 0.35 1.07 16 6 O -0.32 -6.19 10.08 -92.49 -0.93 -7.12 16 7 C 0.12 2.35 6.69 22.51 0.15 2.50 16 8 C -0.21 -3.76 9.04 22.37 0.20 -3.56 16 9 C -0.08 -1.38 9.69 22.25 0.22 -1.17 16 10 C -0.13 -2.36 5.13 -19.85 -0.10 -2.46 16 11 C -0.07 -1.15 5.46 29.85 0.16 -0.98 16 12 C 0.15 3.76 5.66 86.38 0.49 4.25 16 13 N -0.73 -21.06 5.56 -478.53 -2.66 -23.72 16 14 C 0.69 29.42 8.57 179.05 1.53 30.95 16 15 O -0.65 -34.99 16.34 -3.99 -0.07 -35.05 16 16 N -0.72 -31.61 5.55 -482.28 -2.68 -34.29 16 17 C 0.28 16.06 5.43 85.63 0.46 16.52 16 18 C -0.56 -30.54 9.28 25.60 0.24 -30.30 16 19 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 22 Si 0.99 42.44 29.54 68.60 2.03 44.46 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 C -0.08 -1.45 9.69 22.25 0.22 -1.23 16 27 C -0.17 -3.34 9.99 22.37 0.22 -3.12 16 28 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.07 0.66 8.12 -2.39 -0.02 0.65 16 30 H 0.06 0.68 6.37 -2.39 -0.02 0.67 16 31 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 32 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 33 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.07 0.52 8.12 -2.39 -0.02 0.50 16 35 H 0.08 0.96 8.06 -2.38 -0.02 0.94 16 36 H 0.07 0.77 5.87 -2.38 -0.01 0.75 16 37 H 0.08 0.79 7.65 -2.39 -0.02 0.77 16 38 H 0.14 1.85 6.30 -2.91 -0.02 1.83 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.10 1.25 8.08 -2.39 -0.02 1.23 16 41 H 0.10 1.27 8.08 -2.38 -0.02 1.25 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.41 8.47 8.49 -92.71 -0.79 7.68 16 45 H 0.41 14.37 8.34 -92.71 -0.77 13.60 16 46 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 50 H 0.13 2.45 8.06 -2.92 -0.02 2.43 16 Total: -1.00 -79.10 414.42 -1.88 -80.98 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.62 Total: 26.16 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 7.47 Total: 17.07 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -9.77 Total: -126.51 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.00 Total: -42.17 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -79.10 -1.88 -80.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.017 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds