Wall clock time and date at job start Tue Mar 31 2020 18:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99943 * 2 1 4 4 C 1.46899 * 111.00142 * 123.95089 * 2 1 3 5 5 C 1.53009 * 109.46843 * 66.04644 * 4 2 1 6 6 N 1.46496 * 109.46994 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00327 * 270.00285 * 6 5 4 8 8 C 1.50708 * 109.47182 * 264.84135 * 7 6 5 9 9 C 1.34513 * 125.78935 * 95.23462 * 8 7 6 10 10 C 1.41379 * 106.83654 * 180.02562 * 9 8 7 11 11 C 1.34513 * 106.84483 * 0.02562 * 10 9 8 12 12 O 1.34302 * 125.78473 * 274.93346 * 8 7 6 13 13 C 1.34775 * 119.99997 * 89.99902 * 6 5 4 14 14 O 1.21591 * 119.99886 * 5.02808 * 13 6 5 15 15 N 1.34781 * 120.00273 * 185.02259 * 13 6 5 16 16 C 1.46499 * 119.99847 * 185.32331 * 15 13 6 17 17 C 1.53004 * 109.46613 * 184.89232 * 16 15 13 18 18 C 1.50694 * 115.55344 * 65.00445 * 17 16 15 19 19 H 1.08007 * 119.99680 * 269.32609 * 18 17 16 20 20 C 1.37873 * 120.00321 * 89.04835 * 18 17 16 21 21 N 1.31513 * 120.00041 * 171.88806 * 20 18 17 22 22 Si 1.86802 * 119.99863 * 351.88610 * 20 18 17 23 23 H 1.48497 * 109.46827 * 93.13983 * 22 20 18 24 24 H 1.48507 * 109.47007 * 213.13576 * 22 20 18 25 25 H 1.48493 * 109.47432 * 333.14119 * 22 20 18 26 26 C 1.53005 * 117.49275 * 210.66872 * 17 16 15 27 27 C 1.53005 * 117.49630 * 279.32455 * 17 16 15 28 28 H 1.09002 * 109.47200 * 296.04383 * 1 2 3 29 29 H 1.08994 * 109.47448 * 56.04608 * 1 2 3 30 30 H 1.08998 * 109.46820 * 176.04668 * 1 2 3 31 31 H 1.09001 * 109.47167 * 183.95991 * 3 2 1 32 32 H 1.09000 * 109.47343 * 303.95163 * 3 2 1 33 33 H 1.08998 * 109.47431 * 63.95522 * 3 2 1 34 34 H 1.09001 * 109.47685 * 306.04960 * 4 2 1 35 35 H 1.08996 * 109.47327 * 186.04430 * 4 2 1 36 36 H 1.09000 * 109.47067 * 60.00134 * 5 4 2 37 37 H 1.08996 * 109.46985 * 299.99996 * 5 4 2 38 38 H 1.08999 * 109.47228 * 24.83655 * 7 6 5 39 39 H 1.08999 * 109.47393 * 144.83756 * 7 6 5 40 40 H 1.07990 * 126.57880 * 359.97021 * 9 8 7 41 41 H 1.07997 * 126.57817 * 179.97438 * 10 9 8 42 42 H 1.08003 * 125.79576 * 179.97438 * 11 10 9 43 43 H 0.97001 * 119.99656 * 5.33171 * 15 13 6 44 44 H 1.09004 * 109.47412 * 64.89236 * 16 15 13 45 45 H 1.08998 * 109.47386 * 304.88907 * 16 15 13 46 46 H 0.96999 * 120.00122 * 174.99297 * 21 20 18 47 47 H 1.09001 * 117.49791 * 214.99781 * 26 17 16 48 48 H 1.08994 * 117.50568 * 0.02562 * 26 17 16 49 49 H 1.08993 * 117.49774 * 359.97438 * 27 17 16 50 50 H 1.09005 * 117.49235 * 144.97572 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1570 -3.0066 2.1045 7 6 3.5019 -3.5836 2.0389 8 6 3.4119 -5.0171 1.5825 9 6 3.5522 -5.4499 0.3166 10 6 3.3928 -6.8544 0.3440 11 6 3.1640 -7.1958 1.6249 12 8 3.1834 -6.0796 2.3715 13 6 1.4032 -3.1785 3.2084 14 8 0.2549 -2.7791 3.2288 15 7 1.9221 -3.7932 4.2899 16 6 1.0705 -4.0845 5.4458 17 6 1.9239 -4.6684 6.5735 18 6 2.9558 -3.7377 7.1564 19 1 3.9538 -3.7117 6.7442 20 6 2.6245 -2.9152 8.2122 21 7 3.5595 -2.2218 8.8242 22 14 0.8475 -2.7858 8.7733 23 1 0.6011 -3.7611 9.8657 24 1 0.5836 -1.4108 9.2686 25 1 -0.0550 -3.0826 7.6320 26 6 1.2545 -5.6644 7.5227 27 6 2.2773 -6.1550 6.4948 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0710 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3872 2.0629 35 1 3.0797 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0452 37 1 0.5472 -2.3475 0.9323 38 1 4.1072 -3.0150 1.3329 39 1 3.9626 -3.5448 3.0260 40 1 3.7481 -4.8412 -0.5536 41 1 3.4440 -7.5245 -0.5013 42 1 2.9981 -8.1981 1.9915 43 1 2.8594 -4.0425 4.3028 44 1 0.3038 -4.8047 5.1600 45 1 0.5957 -3.1651 5.7882 46 1 3.3179 -1.5888 9.5183 47 1 1.5606 -5.6466 8.5686 48 1 0.2064 -5.9040 7.3435 49 1 1.9015 -6.7170 5.6399 50 1 3.2565 -6.4596 6.8642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431197368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:44 Heat of formation + Delta-G solvation = 33.746448 kcal Electronic energy + Delta-G solvation = -30303.542207 eV Core-core repulsion = 26334.384924 eV Total energy + Delta-G solvation = -3969.157284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53708 -39.89992 -37.74133 -37.02983 -35.49273 -33.49005 -32.95365 -32.10783 -30.99884 -29.20201 -27.68675 -26.64964 -25.94516 -25.24275 -23.68096 -21.75309 -21.68708 -21.20363 -20.81841 -19.46282 -19.15402 -17.94801 -17.24689 -16.73627 -16.19792 -15.73777 -15.59586 -15.44089 -15.05032 -14.79271 -14.66690 -14.34590 -14.06460 -13.73336 -13.37801 -13.16825 -12.88049 -12.82080 -12.78289 -12.71838 -12.54441 -12.40165 -12.18676 -11.96993 -11.86643 -11.81791 -11.63326 -11.14418 -10.85423 -10.67129 -10.50857 -10.12649 -9.92865 -9.82422 -9.63528 -9.14882 -8.84923 -8.63349 -8.54168 -8.51775 -8.47068 -8.11866 -6.15505 -4.18201 1.66014 2.52762 2.97243 3.01202 3.30353 3.40391 3.47348 3.62646 3.93912 4.32344 4.42509 4.62088 4.84344 4.89368 4.98332 5.00236 5.04161 5.09312 5.14377 5.15248 5.29848 5.39781 5.41796 5.52348 5.57835 5.70318 5.72623 5.75905 5.78688 5.84418 5.86089 6.02324 6.06596 6.07323 6.10134 6.28298 6.39466 6.46408 6.47490 6.58228 6.73743 6.85888 6.90346 7.04603 7.10712 7.13145 7.20124 7.28117 7.70431 8.42301 8.43678 8.85130 9.03484 9.49049 10.96041 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.004451 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.471127 B = 6289.605747 C = 8552.293920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.036 3.964 5 C 0.139 3.861 6 N -0.628 5.628 7 C 0.190 3.810 8 C -0.030 4.030 9 C -0.198 4.198 10 C -0.221 4.221 11 C -0.033 4.033 12 O -0.161 6.161 13 C 0.704 3.296 14 O -0.596 6.596 15 N -0.713 5.713 16 C 0.173 3.827 17 C -0.015 4.015 18 C -0.486 4.486 19 H 0.077 0.923 20 C 0.082 3.918 21 N -0.895 5.895 22 Si 0.873 3.127 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.256 1.256 26 C -0.191 4.191 27 C -0.176 4.176 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.199 0.801 43 H 0.399 0.601 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.265 0.735 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 -2.629 -19.156 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.094 4.094 5 C 0.015 3.985 6 N -0.366 5.366 7 C 0.066 3.934 8 C -0.082 4.082 9 C -0.218 4.218 10 C -0.240 4.240 11 C -0.102 4.102 12 O -0.056 6.056 13 C 0.406 3.594 14 O -0.475 6.475 15 N -0.367 5.367 16 C 0.049 3.951 17 C -0.017 4.017 18 C -0.523 4.523 19 H 0.095 0.905 20 C -0.121 4.121 21 N -0.532 5.532 22 Si 0.701 3.299 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.180 1.180 26 C -0.229 4.229 27 C -0.213 4.213 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.216 0.784 43 H 0.235 0.765 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.823 -2.457 -19.009 19.185 hybrid contribution -0.668 0.273 0.938 1.184 sum -1.492 -2.184 -18.071 18.263 Atomic orbital electron populations 1.22455 0.87223 1.02657 1.00492 1.61968 1.08270 1.13806 1.42879 1.22370 1.00694 0.88767 1.00519 1.22576 1.00299 0.94416 0.92063 1.21203 1.00815 0.89187 0.87274 1.47128 1.16118 1.56712 1.16630 1.19874 0.85183 0.84435 1.03925 1.23023 1.05564 0.89689 0.89973 1.21560 1.08208 0.95143 0.96927 1.21783 1.08821 0.95821 0.97615 1.24068 1.05200 0.90418 0.90516 1.84121 1.68971 1.14569 1.37924 1.15952 0.84347 0.78989 0.80155 1.90865 1.16969 1.56751 1.82949 1.45110 1.14149 1.62376 1.15018 1.21064 0.90984 0.99397 0.83666 1.19608 0.97925 0.89085 0.95062 1.20157 0.96673 1.20734 1.14772 0.90546 1.24918 0.96975 0.95270 0.94923 1.69913 1.32571 1.25963 1.24715 0.86953 0.86421 0.76892 0.79672 1.20420 1.22016 1.17988 1.22933 0.96227 1.06941 0.96836 1.22814 0.99319 0.99061 1.00120 0.95264 0.91598 0.90921 0.91350 0.91424 0.95540 0.93833 0.90668 0.90063 0.89630 0.86823 0.88671 0.83639 0.83734 0.78388 0.76497 0.94420 0.91559 0.92548 0.89162 0.90838 0.90915 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 60.06 0.56 0.77 16 2 N -0.54 -5.97 5.02 -251.26 -1.26 -7.23 16 3 C 0.02 0.23 9.57 60.06 0.57 0.81 16 4 C 0.04 0.44 5.28 -3.82 -0.02 0.41 16 5 C 0.14 1.75 5.35 -4.04 -0.02 1.73 16 6 N -0.63 -9.06 2.47 -180.80 -0.45 -9.50 16 7 C 0.19 2.23 5.75 -5.19 -0.03 2.20 16 8 C -0.03 -0.38 6.86 -35.62 -0.24 -0.62 16 9 C -0.20 -2.20 10.81 -39.70 -0.43 -2.63 16 10 C -0.22 -2.35 10.91 -39.70 -0.43 -2.79 16 11 C -0.03 -0.38 12.09 29.42 0.36 -0.02 16 12 O -0.16 -2.26 10.65 5.70 0.06 -2.20 16 13 C 0.70 13.38 8.22 -86.92 -0.71 12.66 16 14 O -0.60 -13.36 15.88 5.29 0.08 -13.27 16 15 N -0.71 -13.86 5.33 -65.22 -0.35 -14.21 16 16 C 0.17 3.76 5.16 -4.04 -0.02 3.74 16 17 C -0.02 -0.35 0.83 -155.66 -0.13 -0.47 16 18 C -0.49 -12.83 9.27 -34.44 -0.32 -13.14 16 19 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 20 C 0.08 2.28 5.46 -17.82 -0.10 2.18 16 21 N -0.89 -26.49 13.95 55.43 0.77 -25.72 16 22 Si 0.87 21.59 25.12 -169.99 -4.27 17.32 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.26 -6.14 5.54 56.52 0.31 -5.82 16 26 C -0.19 -3.98 7.73 -26.69 -0.21 -4.19 16 27 C -0.18 -3.43 9.96 -26.69 -0.27 -3.70 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.79 6.47 -51.93 -0.34 0.45 16 31 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 36 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.09 1.24 5.77 -51.93 -0.30 0.94 16 38 H 0.11 0.96 8.03 -51.93 -0.42 0.55 16 39 H 0.10 1.18 6.38 -51.93 -0.33 0.85 16 40 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.20 1.59 8.06 -52.48 -0.42 1.16 16 43 H 0.40 7.32 6.19 -40.82 -0.25 7.06 16 44 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 45 H 0.07 1.61 6.29 -51.93 -0.33 1.28 16 46 H 0.26 7.44 8.32 -40.82 -0.34 7.10 16 47 H 0.09 1.97 7.45 -51.93 -0.39 1.58 16 48 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 50 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -32.67 405.32 -9.07 -41.74 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.32 Total: 10.02 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.44 Total: -3.05 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -1.28 Total: -56.66 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.14 Total: -15.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.27 Total: 17.32 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.67 -9.07 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431197368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.482 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds