Wall clock time and date at job start Tue Mar 31 2020 18:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 110.99943 * 2 1 4 4 C 1.46899 * 111.00142 * 123.95089 * 2 1 3 5 5 C 1.53009 * 109.46843 * 66.04644 * 4 2 1 6 6 N 1.46496 * 109.46994 * 179.97438 * 5 4 2 7 7 C 1.46498 * 120.00327 * 270.00285 * 6 5 4 8 8 C 1.50708 * 109.47182 * 264.84135 * 7 6 5 9 9 C 1.34513 * 125.78935 * 95.23462 * 8 7 6 10 10 C 1.41379 * 106.83654 * 180.02562 * 9 8 7 11 11 C 1.34513 * 106.84483 * 0.02562 * 10 9 8 12 12 O 1.34302 * 125.78473 * 274.93346 * 8 7 6 13 13 C 1.34775 * 119.99997 * 89.99902 * 6 5 4 14 14 O 1.21591 * 119.99886 * 5.02808 * 13 6 5 15 15 N 1.34781 * 120.00273 * 185.02259 * 13 6 5 16 16 C 1.46499 * 119.99847 * 185.32331 * 15 13 6 17 17 C 1.53004 * 109.46613 * 184.89232 * 16 15 13 18 18 C 1.50694 * 115.55344 * 65.00445 * 17 16 15 19 19 H 1.08007 * 119.99680 * 269.32609 * 18 17 16 20 20 C 1.37873 * 120.00321 * 89.04835 * 18 17 16 21 21 N 1.31513 * 120.00041 * 171.88806 * 20 18 17 22 22 Si 1.86802 * 119.99863 * 351.88610 * 20 18 17 23 23 H 1.48497 * 109.46827 * 93.13983 * 22 20 18 24 24 H 1.48507 * 109.47007 * 213.13576 * 22 20 18 25 25 H 1.48493 * 109.47432 * 333.14119 * 22 20 18 26 26 C 1.53005 * 117.49275 * 210.66872 * 17 16 15 27 27 C 1.53005 * 117.49630 * 279.32455 * 17 16 15 28 28 H 1.09002 * 109.47200 * 296.04383 * 1 2 3 29 29 H 1.08994 * 109.47448 * 56.04608 * 1 2 3 30 30 H 1.08998 * 109.46820 * 176.04668 * 1 2 3 31 31 H 1.09001 * 109.47167 * 183.95991 * 3 2 1 32 32 H 1.09000 * 109.47343 * 303.95163 * 3 2 1 33 33 H 1.08998 * 109.47431 * 63.95522 * 3 2 1 34 34 H 1.09001 * 109.47685 * 306.04960 * 4 2 1 35 35 H 1.08996 * 109.47327 * 186.04430 * 4 2 1 36 36 H 1.09000 * 109.47067 * 60.00134 * 5 4 2 37 37 H 1.08996 * 109.46985 * 299.99996 * 5 4 2 38 38 H 1.08999 * 109.47228 * 24.83655 * 7 6 5 39 39 H 1.08999 * 109.47393 * 144.83756 * 7 6 5 40 40 H 1.07990 * 126.57880 * 359.97021 * 9 8 7 41 41 H 1.07997 * 126.57817 * 179.97438 * 10 9 8 42 42 H 1.08003 * 125.79576 * 179.97438 * 11 10 9 43 43 H 0.97001 * 119.99656 * 5.33171 * 15 13 6 44 44 H 1.09004 * 109.47412 * 64.89236 * 16 15 13 45 45 H 1.08998 * 109.47386 * 304.88907 * 16 15 13 46 46 H 0.96999 * 120.00122 * 174.99297 * 21 20 18 47 47 H 1.09001 * 117.49791 * 214.99781 * 26 17 16 48 48 H 1.08994 * 117.50568 * 0.02562 * 26 17 16 49 49 H 1.08993 * 117.49774 * 359.97438 * 27 17 16 50 50 H 1.09005 * 117.49235 * 144.97572 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1570 -3.0066 2.1045 7 6 3.5019 -3.5836 2.0389 8 6 3.4119 -5.0171 1.5825 9 6 3.5522 -5.4499 0.3166 10 6 3.3928 -6.8544 0.3440 11 6 3.1640 -7.1958 1.6249 12 8 3.1834 -6.0796 2.3715 13 6 1.4032 -3.1785 3.2084 14 8 0.2549 -2.7791 3.2288 15 7 1.9221 -3.7932 4.2899 16 6 1.0705 -4.0845 5.4458 17 6 1.9239 -4.6684 6.5735 18 6 2.9558 -3.7377 7.1564 19 1 3.9538 -3.7117 6.7442 20 6 2.6245 -2.9152 8.2122 21 7 3.5595 -2.2218 8.8242 22 14 0.8475 -2.7858 8.7733 23 1 0.6011 -3.7611 9.8657 24 1 0.5836 -1.4108 9.2686 25 1 -0.0550 -3.0826 7.6320 26 6 1.2545 -5.6644 7.5227 27 6 2.2773 -6.1550 6.4948 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0710 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3872 2.0629 35 1 3.0797 -0.6611 1.1756 36 1 2.0658 -2.6214 0.0452 37 1 0.5472 -2.3475 0.9323 38 1 4.1072 -3.0150 1.3329 39 1 3.9626 -3.5448 3.0260 40 1 3.7481 -4.8412 -0.5536 41 1 3.4440 -7.5245 -0.5013 42 1 2.9981 -8.1981 1.9915 43 1 2.8594 -4.0425 4.3028 44 1 0.3038 -4.8047 5.1600 45 1 0.5957 -3.1651 5.7882 46 1 3.3179 -1.5888 9.5183 47 1 1.5606 -5.6466 8.5686 48 1 0.2064 -5.9040 7.3435 49 1 1.9015 -6.7170 5.6399 50 1 3.2565 -6.4596 6.8642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431197368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:43 Heat of formation + Delta-G solvation = 11.712499 kcal Electronic energy + Delta-G solvation = -30304.497671 eV Core-core repulsion = 26334.384924 eV Total energy + Delta-G solvation = -3970.112747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.41175 -41.28950 -39.05641 -38.40024 -36.73339 -35.05260 -34.20837 -33.82402 -31.95384 -30.27958 -28.52191 -28.33268 -27.16040 -26.81212 -24.82232 -23.32146 -22.60660 -22.21223 -21.76812 -21.15777 -20.54331 -19.32843 -18.42244 -18.05729 -17.67393 -16.97879 -16.83578 -16.61752 -16.38807 -16.05135 -15.77204 -15.59454 -15.41040 -14.98227 -14.78886 -14.72056 -14.37284 -14.17553 -13.90836 -13.72448 -13.62208 -13.55470 -13.38015 -13.12105 -13.03214 -12.74673 -12.64168 -12.58313 -12.49863 -12.20442 -11.97055 -11.86164 -11.69112 -11.32341 -10.92846 -10.75555 -10.66469 -10.38849 -10.16911 -9.63700 -9.42340 -9.36488 -8.31574 -6.35433 0.75593 1.31554 1.37756 1.48835 1.59997 1.89375 2.01730 2.32327 2.35986 2.83742 3.03706 3.12804 3.33934 3.75300 3.91189 3.99987 4.04191 4.11722 4.22461 4.27211 4.36781 4.37002 4.40240 4.42778 4.50064 4.52936 4.53399 4.58492 4.70341 4.74269 4.85321 4.86688 4.92986 4.96765 5.00228 5.05013 5.06775 5.09460 5.25473 5.30561 5.42833 5.48603 5.61504 5.70065 5.70513 5.85877 5.96569 6.01357 6.27846 6.31636 6.71166 6.98300 7.34096 7.55363 8.83298 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008679 B = 0.004451 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.471127 B = 6289.605747 C = 8552.293920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.542 5.542 3 C 0.023 3.977 4 C 0.044 3.956 5 C 0.142 3.858 6 N -0.619 5.619 7 C 0.189 3.811 8 C -0.056 4.056 9 C -0.191 4.191 10 C -0.227 4.227 11 C -0.045 4.045 12 O -0.191 6.191 13 C 0.699 3.301 14 O -0.637 6.637 15 N -0.713 5.713 16 C 0.184 3.816 17 C -0.038 4.038 18 C -0.474 4.474 19 H 0.044 0.956 20 C 0.031 3.969 21 N -0.941 5.941 22 Si 0.921 3.079 23 H -0.265 1.265 24 H -0.302 1.302 25 H -0.245 1.245 26 C -0.189 4.189 27 C -0.148 4.148 28 H 0.010 0.990 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.014 0.986 34 H 0.005 0.995 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.152 0.848 39 H 0.083 0.917 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.224 0.776 43 H 0.404 0.596 44 H 0.048 0.952 45 H 0.035 0.965 46 H 0.264 0.736 47 H 0.079 0.921 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 -4.070 -21.702 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.125 4.125 4 C -0.086 4.086 5 C 0.019 3.981 6 N -0.355 5.355 7 C 0.066 3.934 8 C -0.108 4.108 9 C -0.210 4.210 10 C -0.246 4.246 11 C -0.113 4.113 12 O -0.087 6.087 13 C 0.401 3.599 14 O -0.519 6.519 15 N -0.367 5.367 16 C 0.059 3.941 17 C -0.040 4.040 18 C -0.511 4.511 19 H 0.063 0.937 20 C -0.167 4.167 21 N -0.581 5.581 22 Si 0.747 3.253 23 H -0.190 1.190 24 H -0.229 1.229 25 H -0.169 1.169 26 C -0.227 4.227 27 C -0.185 4.185 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.033 0.967 34 H 0.024 0.976 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.169 0.831 39 H 0.101 0.899 40 H 0.187 0.813 41 H 0.186 0.814 42 H 0.241 0.759 43 H 0.241 0.759 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.937 -3.918 -21.601 21.973 hybrid contribution -0.530 0.680 1.609 1.825 sum -1.467 -3.238 -19.991 20.305 Atomic orbital electron populations 1.22477 0.87236 1.02606 1.00463 1.62033 1.08288 1.14683 1.41608 1.22467 1.01531 0.87817 1.00699 1.22472 1.00975 0.94187 0.90933 1.21299 0.99798 0.89381 0.87577 1.47140 1.16708 1.56144 1.15480 1.20121 0.83730 0.85022 1.04528 1.23112 1.07486 0.89570 0.90598 1.21917 1.06468 0.95709 0.96954 1.22156 1.08175 0.96086 0.98147 1.24732 1.04757 0.90839 0.90955 1.84090 1.69747 1.15584 1.39244 1.16153 0.84221 0.78562 0.80976 1.90829 1.18898 1.58310 1.83837 1.45004 1.14140 1.62770 1.14795 1.20760 0.91196 0.98024 0.84108 1.19429 0.98305 0.89909 0.96309 1.20305 0.96307 1.20739 1.13769 0.93732 1.25602 1.00143 0.95415 0.95519 1.70030 1.34407 1.27552 1.26112 0.86161 0.82665 0.76616 0.79821 1.19010 1.22907 1.16894 1.22996 0.97878 1.05623 0.96206 1.22808 0.99050 0.96402 1.00257 0.97172 0.89392 0.91385 0.90146 0.89643 0.96722 0.97636 0.89032 0.86952 0.91767 0.83055 0.89858 0.81309 0.81415 0.75942 0.75944 0.93387 0.94668 0.92707 0.90295 0.88435 0.88257 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.32 127.69 1.19 1.61 16 2 N -0.54 -11.13 5.02 -948.85 -4.76 -15.89 16 3 C 0.02 0.39 9.57 127.69 1.22 1.61 16 4 C 0.04 1.04 5.28 86.31 0.46 1.49 16 5 C 0.14 3.43 5.35 86.38 0.46 3.89 16 6 N -0.62 -17.43 2.47 -844.18 -2.08 -19.51 16 7 C 0.19 4.15 5.75 85.64 0.49 4.64 16 8 C -0.06 -1.31 6.86 24.84 0.17 -1.14 16 9 C -0.19 -3.65 10.81 22.19 0.24 -3.41 16 10 C -0.23 -4.15 10.91 22.19 0.24 -3.91 16 11 C -0.05 -0.92 12.09 66.97 0.81 -0.11 16 12 O -0.19 -5.07 10.65 -2.50 -0.03 -5.10 16 13 C 0.70 26.87 8.22 179.05 1.47 28.34 16 14 O -0.64 -29.25 15.88 -4.00 -0.06 -29.31 16 15 N -0.71 -27.94 5.33 -478.52 -2.55 -30.49 16 16 C 0.18 7.97 5.16 86.38 0.45 8.41 16 17 C -0.04 -1.68 0.83 -52.93 -0.04 -1.73 16 18 C -0.47 -25.48 9.27 25.60 0.24 -25.24 16 19 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 20 C 0.03 1.78 5.46 84.65 0.46 2.24 16 21 N -0.94 -57.51 13.95 21.45 0.30 -57.21 16 22 Si 0.92 44.96 25.12 68.60 1.72 46.69 16 23 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 25 H -0.25 -11.49 5.54 99.48 0.55 -10.94 16 26 C -0.19 -7.49 7.73 30.62 0.24 -7.25 16 27 C -0.15 -5.47 9.96 30.62 0.30 -5.16 16 28 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 30 H 0.07 1.46 6.47 -2.39 -0.02 1.45 16 31 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 33 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.01 0.17 8.12 -2.39 -0.02 0.15 16 35 H 0.09 1.85 8.06 -2.39 -0.02 1.83 16 36 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.06 1.86 5.77 -2.39 -0.01 1.85 16 38 H 0.15 2.11 8.03 -2.39 -0.02 2.09 16 39 H 0.08 2.04 6.38 -2.39 -0.02 2.02 16 40 H 0.17 2.31 8.06 -2.92 -0.02 2.29 16 41 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.22 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.40 14.96 6.19 -92.71 -0.57 14.39 16 44 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 45 H 0.03 1.73 6.29 -2.39 -0.02 1.72 16 46 H 0.26 15.35 8.32 -92.71 -0.77 14.58 16 47 H 0.08 3.32 7.45 -2.39 -0.02 3.30 16 48 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 49 H 0.10 3.18 8.14 -2.39 -0.02 3.17 16 50 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 Total: -1.00 -73.27 405.32 1.13 -72.14 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.20 Total: 34.39 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 8.40 Total: 4.30 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -9.10 Total: -123.10 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.09 Total: -34.41 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.72 Total: 46.69 kcal Total: -73.27 1.13 -72.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431197368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.848 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds