Wall clock time and date at job start Tue Mar 31 2020 18:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00041 * 2 1 4 4 C 1.53000 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47058 * 64.21256 * 4 3 2 6 6 C 1.46903 * 110.99834 * 199.84260 * 5 4 3 7 7 C 1.46893 * 111.00245 * 75.88781 * 5 4 3 8 8 C 1.53000 * 109.47657 * 189.99860 * 7 5 4 9 9 C 1.52990 * 109.47589 * 179.97438 * 8 7 5 10 10 N 1.46497 * 109.47532 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00246 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00216 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00085 * 180.02562 * 11 10 9 14 14 C 1.39961 * 120.00323 * 185.37350 * 13 11 10 15 15 C 1.39286 * 119.94021 * 324.52308 * 14 13 11 16 16 C 1.38494 * 120.42579 * 179.97438 * 15 14 13 17 17 C 1.37684 * 120.31877 * 0.29373 * 16 15 14 18 18 C 1.40743 * 119.88483 * 359.43533 * 17 16 15 19 19 C 1.41407 * 120.21376 * 180.31043 * 18 17 16 20 20 H 1.07999 * 119.99678 * 323.90605 * 19 18 17 21 21 C 1.39931 * 120.00046 * 143.89587 * 19 18 17 22 22 N 1.30829 * 119.99932 * 173.64855 * 21 19 18 23 23 Si 1.86799 * 120.00020 * 353.65513 * 21 19 18 24 24 H 1.48502 * 109.47500 * 89.04848 * 23 21 19 25 25 H 1.48501 * 109.47034 * 209.04954 * 23 21 19 26 26 H 1.48507 * 109.47033 * 329.04578 * 23 21 19 27 27 C 1.38231 * 119.94993 * 144.49976 * 14 13 11 28 28 H 1.09001 * 109.46999 * 300.00019 * 1 2 3 29 29 H 1.09002 * 109.46887 * 59.99865 * 1 2 3 30 30 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47322 * 59.99989 * 3 2 1 32 32 H 1.08997 * 109.47165 * 299.99554 * 3 2 1 33 33 H 1.09003 * 109.46927 * 304.21334 * 4 3 2 34 34 H 1.08998 * 109.46954 * 184.21218 * 4 3 2 35 35 H 1.09001 * 109.47057 * 300.44839 * 6 5 4 36 36 H 1.09001 * 109.47391 * 60.44327 * 6 5 4 37 37 H 1.09003 * 109.46965 * 180.44912 * 6 5 4 38 38 H 1.09006 * 109.47241 * 69.99335 * 7 5 4 39 39 H 1.09002 * 109.46854 * 309.99834 * 7 5 4 40 40 H 1.09005 * 109.46708 * 59.99378 * 8 7 5 41 41 H 1.09000 * 109.46675 * 300.00812 * 8 7 5 42 42 H 1.09006 * 109.47172 * 59.99559 * 9 8 7 43 43 H 1.09002 * 109.46991 * 300.00016 * 9 8 7 44 44 H 0.97004 * 119.99688 * 0.02562 * 10 9 8 45 45 H 0.97000 * 119.99705 * 5.37271 * 13 11 10 46 46 H 1.08000 * 119.79154 * 359.97438 * 15 14 13 47 47 H 1.07998 * 119.83859 * 180.02562 * 16 15 14 48 48 H 1.07992 * 120.05609 * 179.70397 * 17 16 15 49 49 H 0.96995 * 119.99869 * 180.02562 * 22 21 19 50 50 H 1.08000 * 120.15862 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9755 0.5455 -1.2480 6 6 5.3276 -0.0110 -1.1058 7 6 3.9094 1.4870 -2.3737 8 6 4.1314 0.7306 -3.6850 9 6 4.0619 1.7110 -4.8574 10 7 4.2738 0.9866 -6.1130 11 6 4.2559 1.6509 -7.2855 12 8 4.0634 2.8513 -7.3013 13 7 4.4504 0.9844 -8.4407 14 6 4.5440 1.6876 -9.6472 15 6 3.7716 2.8291 -9.8483 16 6 3.8568 3.5329 -11.0381 17 6 4.7023 3.1078 -12.0381 18 6 5.4931 1.9593 -11.8468 19 6 6.3687 1.5203 -12.8667 20 1 6.0819 1.6176 -13.9034 21 6 7.6066 0.9600 -12.5328 22 7 8.3628 0.4409 -13.4658 23 14 8.1796 0.9529 -10.7549 24 1 7.6972 -0.2811 -10.0841 25 1 9.6635 0.9914 -10.7128 26 1 7.6336 2.1430 -10.0541 27 6 5.4032 1.2484 -10.6370 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8524 0.5797 0.8490 34 1 3.9786 2.1776 0.0748 35 1 6.0241 0.7875 -0.8500 36 1 5.3301 -0.7622 -0.3161 37 1 5.6318 -0.4711 -2.0460 38 1 4.6819 2.2472 -2.2574 39 1 2.9296 1.9643 -2.3910 40 1 3.3588 -0.0296 -3.8011 41 1 5.1111 0.2531 -3.6676 42 1 4.8342 2.4715 -4.7414 43 1 3.0819 2.1880 -4.8745 44 1 4.4270 0.0289 -6.1005 45 1 4.5254 0.0173 -8.4359 46 1 3.1020 3.1676 -9.0715 47 1 3.2538 4.4169 -11.1837 48 1 4.7617 3.6571 -12.9660 49 1 9.2207 0.0522 -13.2343 50 1 6.0031 0.3639 -10.4816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455920793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:46 Heat of formation + Delta-G solvation = -46.635653 kcal Electronic energy + Delta-G solvation = -27974.404998 eV Core-core repulsion = 24001.762084 eV Total energy + Delta-G solvation = -3972.642913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.10008 -38.95419 -37.79744 -37.35683 -35.29714 -34.26566 -33.26199 -31.96905 -30.32927 -30.21820 -28.54293 -26.92813 -26.33873 -25.09512 -24.44116 -22.32902 -21.56623 -21.47607 -20.99662 -19.87577 -18.22507 -17.44707 -16.97860 -16.72284 -16.41589 -16.01549 -15.85165 -15.51732 -15.25531 -14.97827 -14.63104 -14.56913 -14.31542 -14.14923 -13.95228 -13.41038 -13.01407 -12.96012 -12.78844 -12.55507 -12.51498 -12.17973 -12.13469 -12.03131 -11.73808 -11.60613 -11.49728 -11.35413 -10.95787 -10.92215 -10.77924 -10.51126 -10.10513 -9.99355 -9.89135 -9.59817 -9.16242 -9.13512 -9.01800 -8.71038 -7.55125 -7.12908 -6.80711 -4.45875 2.47095 2.69451 2.84935 3.10344 3.21908 3.36972 3.39176 3.51334 3.55451 4.03921 4.39364 4.50131 4.59173 4.60957 4.64256 4.79968 4.85830 4.91284 4.99072 5.00447 5.05669 5.12333 5.15777 5.24097 5.33884 5.36637 5.40591 5.41538 5.47668 5.60095 5.84366 5.89293 6.03082 6.34985 6.46191 6.51642 6.55689 6.59715 6.62977 6.71473 6.76314 6.86752 7.08111 7.24446 7.47853 7.60278 7.75774 7.87958 8.14534 8.27136 8.41501 8.66707 8.87028 8.87761 10.22479 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.001965 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.509031 B =14246.519459 C =15177.894598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.066 3.934 4 C 0.055 3.945 5 N -0.534 5.534 6 C 0.022 3.978 7 C 0.056 3.944 8 C -0.127 4.127 9 C 0.142 3.858 10 N -0.750 5.750 11 C 0.701 3.299 12 O -0.572 6.572 13 N -0.684 5.684 14 C 0.183 3.817 15 C -0.219 4.219 16 C -0.080 4.080 17 C -0.206 4.206 18 C 0.105 3.895 19 C -0.454 4.454 20 H 0.092 0.908 21 C 0.082 3.918 22 N -0.826 5.826 23 Si 0.912 3.088 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.244 1.244 27 C -0.254 4.254 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.395 0.605 45 H 0.399 0.601 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.282 0.718 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -2.311 27.418 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C -0.012 4.012 4 C -0.073 4.073 5 N -0.258 5.258 6 C -0.126 4.126 7 C -0.072 4.072 8 C -0.166 4.166 9 C 0.017 3.983 10 N -0.407 5.407 11 C 0.401 3.599 12 O -0.448 6.448 13 N -0.331 5.331 14 C 0.090 3.910 15 C -0.240 4.240 16 C -0.099 4.099 17 C -0.226 4.226 18 C 0.102 3.898 19 C -0.484 4.484 20 H 0.109 0.891 21 C -0.134 4.134 22 N -0.452 5.452 23 Si 0.740 3.260 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.168 1.168 27 C -0.276 4.276 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.228 0.772 45 H 0.233 0.767 46 H 0.133 0.867 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.093 0.907 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.307 -1.864 27.235 28.842 hybrid contribution 0.918 -0.206 0.921 1.317 sum -8.389 -2.070 28.156 29.452 Atomic orbital electron populations 1.22734 0.81516 1.02708 0.99686 1.87981 1.19022 1.27128 1.95255 1.22554 0.93399 0.85307 0.99907 1.22143 0.93926 0.98298 0.92940 1.61894 1.25037 1.35245 1.03585 1.22457 0.88175 0.99158 1.02858 1.22060 1.01562 0.93448 0.90149 1.21778 1.03245 0.98798 0.92735 1.21063 1.01849 0.94258 0.81176 1.45093 1.79145 1.11385 1.05039 1.15935 0.78268 0.85457 0.80201 1.90919 1.55354 1.12622 1.85918 1.42635 1.75731 1.09695 1.05015 1.17281 0.96287 0.94043 0.83368 1.20595 1.05457 0.99259 0.98730 1.20611 0.97731 0.98054 0.93486 1.21157 1.03510 0.98505 0.99453 1.17537 0.91650 0.89632 0.91027 1.19400 0.99728 1.34068 0.95179 0.89051 1.26036 0.96490 0.91374 0.99458 1.69624 1.11118 1.29151 1.35326 0.86343 0.76106 0.80776 0.82800 1.20130 1.22269 1.16777 1.20853 1.04929 1.04058 0.97745 0.94477 0.94143 0.89701 0.93161 0.93183 0.89917 0.92971 0.95685 0.91274 0.90880 0.94380 0.90459 0.90223 0.91135 0.91799 0.91646 0.77172 0.76739 0.86660 0.88300 0.87919 0.90730 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.36 10.64 -35.23 -0.37 -3.74 16 3 C 0.07 0.45 6.13 37.16 0.23 0.67 16 4 C 0.05 0.36 5.39 -3.82 -0.02 0.34 16 5 N -0.53 -4.16 4.63 -242.91 -1.12 -5.29 16 6 C 0.02 0.15 9.32 60.07 0.56 0.71 16 7 C 0.06 0.42 4.78 -3.83 -0.02 0.40 16 8 C -0.13 -1.01 5.26 -26.74 -0.14 -1.15 16 9 C 0.14 1.51 5.67 -4.05 -0.02 1.49 16 10 N -0.75 -9.31 5.56 -65.23 -0.36 -9.67 16 11 C 0.70 12.36 8.41 -86.92 -0.73 11.62 16 12 O -0.57 -12.29 13.76 5.29 0.07 -12.22 16 13 N -0.68 -12.37 5.34 -14.27 -0.08 -12.45 16 14 C 0.18 4.09 6.29 -83.76 -0.53 3.56 16 15 C -0.22 -4.98 8.71 -39.10 -0.34 -5.32 16 16 C -0.08 -1.77 10.02 -39.69 -0.40 -2.17 16 17 C -0.21 -4.91 9.79 -38.84 -0.38 -5.29 16 18 C 0.10 2.70 5.07 -106.85 -0.54 2.15 16 19 C -0.45 -12.45 9.61 -37.74 -0.36 -12.81 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 21 C 0.08 2.21 5.50 -17.35 -0.10 2.12 16 22 N -0.83 -22.57 13.93 55.55 0.77 -21.79 16 23 Si 0.91 21.52 24.43 -169.99 -4.15 17.37 16 24 H -0.27 -6.13 6.65 56.52 0.38 -5.75 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.24 -6.10 6.66 56.52 0.38 -5.72 16 27 C -0.25 -6.12 6.85 -38.69 -0.26 -6.39 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.34 6.68 -51.93 -0.35 -0.01 16 33 H 0.08 0.53 7.89 -51.93 -0.41 0.12 16 34 H 0.05 0.29 8.00 -51.93 -0.42 -0.13 16 35 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.07 0.49 6.28 -51.93 -0.33 0.16 16 38 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 39 H 0.08 0.57 6.58 -51.93 -0.34 0.23 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.53 6.46 -51.93 -0.34 0.20 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.39 3.73 8.49 -40.82 -0.35 3.38 16 45 H 0.40 5.79 8.84 -40.82 -0.36 5.43 16 46 H 0.12 2.61 6.21 -52.49 -0.33 2.28 16 47 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 48 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 49 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 50 H 0.10 2.45 4.61 -52.49 -0.24 2.20 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -32.99 400.35 -9.28 -42.28 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.13 Total: 8.22 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.94 Total: -8.75 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.79 Total: -49.20 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.30 Total: -15.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.15 Total: 17.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.99 -9.28 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455920793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.360 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds