Wall clock time and date at job start Tue Mar 31 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00041 * 2 1 4 4 C 1.53000 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47058 * 64.21256 * 4 3 2 6 6 C 1.46903 * 110.99834 * 199.84260 * 5 4 3 7 7 C 1.46893 * 111.00245 * 75.88781 * 5 4 3 8 8 C 1.53000 * 109.47657 * 189.99860 * 7 5 4 9 9 C 1.52990 * 109.47589 * 179.97438 * 8 7 5 10 10 N 1.46497 * 109.47532 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00246 * 180.02562 * 10 9 8 12 12 O 1.21586 * 120.00216 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00085 * 180.02562 * 11 10 9 14 14 C 1.39961 * 120.00323 * 185.37350 * 13 11 10 15 15 C 1.39286 * 119.94021 * 324.52308 * 14 13 11 16 16 C 1.38494 * 120.42579 * 179.97438 * 15 14 13 17 17 C 1.37684 * 120.31877 * 0.29373 * 16 15 14 18 18 C 1.40743 * 119.88483 * 359.43533 * 17 16 15 19 19 C 1.41407 * 120.21376 * 180.31043 * 18 17 16 20 20 H 1.07999 * 119.99678 * 323.90605 * 19 18 17 21 21 C 1.39931 * 120.00046 * 143.89587 * 19 18 17 22 22 N 1.30829 * 119.99932 * 173.64855 * 21 19 18 23 23 Si 1.86799 * 120.00020 * 353.65513 * 21 19 18 24 24 H 1.48502 * 109.47500 * 89.04848 * 23 21 19 25 25 H 1.48501 * 109.47034 * 209.04954 * 23 21 19 26 26 H 1.48507 * 109.47033 * 329.04578 * 23 21 19 27 27 C 1.38231 * 119.94993 * 144.49976 * 14 13 11 28 28 H 1.09001 * 109.46999 * 300.00019 * 1 2 3 29 29 H 1.09002 * 109.46887 * 59.99865 * 1 2 3 30 30 H 1.09000 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47322 * 59.99989 * 3 2 1 32 32 H 1.08997 * 109.47165 * 299.99554 * 3 2 1 33 33 H 1.09003 * 109.46927 * 304.21334 * 4 3 2 34 34 H 1.08998 * 109.46954 * 184.21218 * 4 3 2 35 35 H 1.09001 * 109.47057 * 300.44839 * 6 5 4 36 36 H 1.09001 * 109.47391 * 60.44327 * 6 5 4 37 37 H 1.09003 * 109.46965 * 180.44912 * 6 5 4 38 38 H 1.09006 * 109.47241 * 69.99335 * 7 5 4 39 39 H 1.09002 * 109.46854 * 309.99834 * 7 5 4 40 40 H 1.09005 * 109.46708 * 59.99378 * 8 7 5 41 41 H 1.09000 * 109.46675 * 300.00812 * 8 7 5 42 42 H 1.09006 * 109.47172 * 59.99559 * 9 8 7 43 43 H 1.09002 * 109.46991 * 300.00016 * 9 8 7 44 44 H 0.97004 * 119.99688 * 0.02562 * 10 9 8 45 45 H 0.97000 * 119.99705 * 5.37271 * 13 11 10 46 46 H 1.08000 * 119.79154 * 359.97438 * 15 14 13 47 47 H 1.07998 * 119.83859 * 180.02562 * 16 15 14 48 48 H 1.07992 * 120.05609 * 179.70397 * 17 16 15 49 49 H 0.96995 * 119.99869 * 180.02562 * 22 21 19 50 50 H 1.08000 * 120.15862 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9755 0.5455 -1.2480 6 6 5.3276 -0.0110 -1.1058 7 6 3.9094 1.4870 -2.3737 8 6 4.1314 0.7306 -3.6850 9 6 4.0619 1.7110 -4.8574 10 7 4.2738 0.9866 -6.1130 11 6 4.2559 1.6509 -7.2855 12 8 4.0634 2.8513 -7.3013 13 7 4.4504 0.9844 -8.4407 14 6 4.5440 1.6876 -9.6472 15 6 3.7716 2.8291 -9.8483 16 6 3.8568 3.5329 -11.0381 17 6 4.7023 3.1078 -12.0381 18 6 5.4931 1.9593 -11.8468 19 6 6.3687 1.5203 -12.8667 20 1 6.0819 1.6176 -13.9034 21 6 7.6066 0.9600 -12.5328 22 7 8.3628 0.4409 -13.4658 23 14 8.1796 0.9529 -10.7549 24 1 7.6972 -0.2811 -10.0841 25 1 9.6635 0.9914 -10.7128 26 1 7.6336 2.1430 -10.0541 27 6 5.4032 1.2484 -10.6370 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8524 0.5797 0.8490 34 1 3.9786 2.1776 0.0748 35 1 6.0241 0.7875 -0.8500 36 1 5.3301 -0.7622 -0.3161 37 1 5.6318 -0.4711 -2.0460 38 1 4.6819 2.2472 -2.2574 39 1 2.9296 1.9643 -2.3910 40 1 3.3588 -0.0296 -3.8011 41 1 5.1111 0.2531 -3.6676 42 1 4.8342 2.4715 -4.7414 43 1 3.0819 2.1880 -4.8745 44 1 4.4270 0.0289 -6.1005 45 1 4.5254 0.0173 -8.4359 46 1 3.1020 3.1676 -9.0715 47 1 3.2538 4.4169 -11.1837 48 1 4.7617 3.6571 -12.9660 49 1 9.2207 0.0522 -13.2343 50 1 6.0031 0.3639 -10.4816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455920793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:45 Heat of formation + Delta-G solvation = -70.883967 kcal Electronic energy + Delta-G solvation = -27975.456483 eV Core-core repulsion = 24001.762084 eV Total energy + Delta-G solvation = -3973.694399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.54181 -39.61671 -39.32495 -38.04353 -36.42925 -35.87143 -35.12564 -32.86664 -32.19566 -30.88545 -30.07274 -27.51027 -27.06742 -26.99920 -25.12458 -23.40105 -23.28895 -22.61951 -21.78577 -21.33948 -19.68119 -19.20490 -18.04209 -17.52981 -17.29979 -17.19810 -16.86659 -16.54687 -16.36132 -16.15378 -16.00569 -15.59158 -15.41411 -15.31578 -14.94684 -14.74633 -14.69816 -14.39403 -13.95101 -13.54561 -13.44730 -13.28951 -13.08137 -12.78894 -12.75080 -12.70083 -12.65625 -12.35432 -12.31227 -12.17766 -12.01074 -11.95404 -11.76488 -11.50789 -11.24473 -11.03726 -10.86550 -10.51802 -10.16357 -9.44545 -9.24462 -8.88436 -8.79410 -6.52372 0.68530 0.81339 1.21870 1.35792 1.47607 1.60427 2.09326 2.12294 2.67657 2.84923 3.00271 3.24452 3.47767 3.89742 3.98420 4.08507 4.19762 4.26443 4.27539 4.42379 4.47114 4.48247 4.54221 4.56156 4.60110 4.63501 4.66802 4.69813 4.76851 4.77869 4.81925 4.89925 4.92287 4.97058 5.00287 5.04537 5.17118 5.19477 5.33130 5.43658 5.59327 5.69893 5.89163 5.90181 6.05496 6.06791 6.11214 6.25157 6.37567 6.41554 6.72067 6.84137 7.00587 7.49817 8.27550 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.001965 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.509031 B =14246.519459 C =15177.894598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.063 3.937 4 C 0.054 3.946 5 N -0.547 5.547 6 C 0.022 3.978 7 C 0.058 3.942 8 C -0.112 4.112 9 C 0.143 3.857 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.612 6.612 13 N -0.679 5.679 14 C 0.186 3.814 15 C -0.219 4.219 16 C -0.075 4.075 17 C -0.220 4.220 18 C 0.085 3.915 19 C -0.484 4.484 20 H 0.059 0.941 21 C 0.046 3.954 22 N -0.864 5.864 23 Si 0.965 3.035 24 H -0.250 1.250 25 H -0.284 1.284 26 H -0.265 1.265 27 C -0.259 4.259 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.413 0.587 45 H 0.417 0.583 46 H 0.120 0.880 47 H 0.132 0.868 48 H 0.108 0.892 49 H 0.291 0.709 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 -2.668 30.439 32.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.074 4.074 5 N -0.271 5.271 6 C -0.126 4.126 7 C -0.070 4.070 8 C -0.150 4.150 9 C 0.018 3.982 10 N -0.384 5.384 11 C 0.399 3.601 12 O -0.491 6.491 13 N -0.327 5.327 14 C 0.091 3.909 15 C -0.240 4.240 16 C -0.094 4.094 17 C -0.240 4.240 18 C 0.082 3.918 19 C -0.515 4.515 20 H 0.078 0.922 21 C -0.166 4.166 22 N -0.492 5.492 23 Si 0.790 3.210 24 H -0.175 1.175 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.280 4.280 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.249 0.751 45 H 0.254 0.746 46 H 0.138 0.862 47 H 0.150 0.850 48 H 0.126 0.874 49 H 0.101 0.899 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.910 -2.291 30.300 31.961 hybrid contribution 0.930 -0.021 0.086 0.935 sum -8.979 -2.312 30.385 31.769 Atomic orbital electron populations 1.22842 0.80477 1.03305 1.00345 1.87935 1.20345 1.28401 1.95430 1.22656 0.93464 0.84728 1.00541 1.22192 0.93902 0.98851 0.92439 1.61891 1.25612 1.35560 1.04060 1.22468 0.87846 0.99303 1.03007 1.22013 1.01674 0.93407 0.89916 1.21634 1.03739 0.97977 0.91665 1.21167 1.01242 0.94730 0.81051 1.44961 1.77266 1.12282 1.03940 1.16098 0.77971 0.85079 0.80994 1.90891 1.57163 1.14504 1.86572 1.42480 1.75640 1.10553 1.04013 1.17303 0.95119 0.93994 0.84434 1.20865 1.05068 0.99231 0.98817 1.20941 0.97101 0.98765 0.92556 1.21329 1.03844 0.98397 1.00388 1.17687 0.91984 0.90558 0.91532 1.19387 1.01269 1.36523 0.94281 0.92237 1.26663 0.96168 0.90939 1.02816 1.69660 1.11963 1.30638 1.36915 0.85525 0.76176 0.80689 0.78567 1.17528 1.21101 1.18919 1.20885 1.05389 1.04171 0.97600 0.93249 0.94020 0.89232 0.91687 0.93333 0.89883 0.91814 0.95305 0.91104 0.90775 0.94194 0.90459 0.90112 0.90316 0.92658 0.92146 0.75072 0.74619 0.86186 0.85024 0.87370 0.89888 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.65 10.64 -148.98 -1.58 -8.24 16 3 C 0.06 0.75 6.13 71.98 0.44 1.20 16 4 C 0.05 0.61 5.39 86.30 0.47 1.08 16 5 N -0.55 -7.43 4.63 -922.44 -4.27 -11.70 16 6 C 0.02 0.25 9.32 127.69 1.19 1.44 16 7 C 0.06 0.75 4.78 86.30 0.41 1.16 16 8 C -0.11 -1.48 5.26 30.59 0.16 -1.32 16 9 C 0.14 2.71 5.67 86.38 0.49 3.20 16 10 N -0.73 -15.99 5.56 -478.56 -2.66 -18.65 16 11 C 0.70 22.91 8.41 179.06 1.51 24.41 16 12 O -0.61 -25.17 13.76 -3.99 -0.05 -25.22 16 13 N -0.68 -22.80 5.34 -317.33 -1.69 -24.49 16 14 C 0.19 7.97 6.29 38.09 0.24 8.21 16 15 C -0.22 -9.51 8.71 22.58 0.20 -9.31 16 16 C -0.08 -3.19 10.02 22.20 0.22 -2.97 16 17 C -0.22 -10.41 9.79 22.75 0.22 -10.19 16 18 C 0.09 4.42 5.07 -21.31 -0.11 4.31 16 19 C -0.48 -27.44 9.61 23.46 0.23 -27.21 16 20 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 21 C 0.05 2.52 5.50 85.25 0.47 2.99 16 22 N -0.86 -48.21 13.93 21.82 0.30 -47.90 16 23 Si 0.97 43.96 24.43 68.60 1.68 45.64 16 24 H -0.25 -10.29 6.65 99.48 0.66 -9.63 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.26 -12.85 6.66 99.48 0.66 -12.18 16 27 C -0.26 -12.20 6.85 22.85 0.16 -12.04 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.58 6.68 -2.39 -0.02 0.56 16 33 H 0.08 0.93 7.89 -2.39 -0.02 0.91 16 34 H 0.06 0.57 8.00 -2.39 -0.02 0.55 16 35 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 37 H 0.07 0.82 6.28 -2.39 -0.01 0.80 16 38 H 0.04 0.50 8.12 -2.38 -0.02 0.48 16 39 H 0.08 1.00 6.58 -2.39 -0.02 0.98 16 40 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.08 0.95 6.46 -2.39 -0.02 0.93 16 42 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.41 6.33 8.49 -92.70 -0.79 5.54 16 45 H 0.42 10.81 8.84 -92.71 -0.82 9.99 16 46 H 0.12 5.17 6.21 -2.91 -0.02 5.16 16 47 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 48 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 49 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 50 H 0.11 4.92 4.61 -2.91 -0.01 4.91 16 Total: -1.00 -71.43 400.35 -1.49 -72.92 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.74 Total: 31.13 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 7.54 Total: -13.49 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -8.32 Total: -102.74 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.64 Total: -33.46 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Total: -71.43 -1.49 -72.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455920793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.035 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds