Wall clock time and date at job start Tue Mar 31 2020 18:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00249 * 2 1 4 4 C 1.52996 * 109.47669 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47420 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47258 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99810 * 293.95332 * 6 5 4 8 8 C 1.46901 * 110.99854 * 169.99993 * 6 5 4 9 9 C 1.53001 * 109.46800 * 189.99993 * 8 6 5 10 10 N 1.46496 * 109.47021 * 179.97438 * 9 8 6 11 11 C 1.34776 * 120.00374 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99689 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00612 * 180.02562 * 11 10 9 14 14 C 1.39956 * 120.00280 * 184.30999 * 13 11 10 15 15 C 1.39290 * 119.94904 * 144.78318 * 14 13 11 16 16 C 1.38478 * 120.43066 * 179.97438 * 15 14 13 17 17 C 1.37681 * 120.32260 * 0.29488 * 16 15 14 18 18 C 1.40749 * 119.88209 * 359.48141 * 17 16 15 19 19 C 1.41405 * 120.20939 * 180.26422 * 18 17 16 20 20 H 1.08001 * 119.99912 * 214.94508 * 19 18 17 21 21 C 1.39935 * 119.99933 * 34.95249 * 19 18 17 22 22 N 1.30823 * 120.00024 * 355.53789 * 21 19 18 23 23 Si 1.86806 * 119.99782 * 175.54311 * 21 19 18 24 24 H 1.48501 * 109.46967 * 89.99555 * 23 21 19 25 25 H 1.48501 * 109.47036 * 209.99772 * 23 21 19 26 26 H 1.48501 * 109.46921 * 329.99791 * 23 21 19 27 27 C 1.38234 * 119.94572 * 324.80404 * 14 13 11 28 28 H 1.09004 * 109.47208 * 300.00059 * 1 2 3 29 29 H 1.08999 * 109.47125 * 60.00646 * 1 2 3 30 30 H 1.09003 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47458 * 59.99323 * 3 2 1 32 32 H 1.09010 * 109.46745 * 299.99807 * 3 2 1 33 33 H 1.08998 * 109.47038 * 59.99523 * 4 3 2 34 34 H 1.08999 * 109.47300 * 299.99837 * 4 3 2 35 35 H 1.08998 * 109.47223 * 59.99858 * 5 4 3 36 36 H 1.09010 * 109.47051 * 299.99784 * 5 4 3 37 37 H 1.09001 * 109.47141 * 296.04437 * 7 6 5 38 38 H 1.08999 * 109.47085 * 56.04454 * 7 6 5 39 39 H 1.08994 * 109.46971 * 176.04711 * 7 6 5 40 40 H 1.08997 * 109.46996 * 69.99790 * 8 6 5 41 41 H 1.09000 * 109.47134 * 309.99439 * 8 6 5 42 42 H 1.08996 * 109.47104 * 59.99762 * 9 8 6 43 43 H 1.09000 * 109.46825 * 299.99636 * 9 8 6 44 44 H 0.97003 * 119.99946 * 0.02562 * 10 9 8 45 45 H 0.97003 * 119.99566 * 4.30506 * 13 11 10 46 46 H 1.08004 * 119.78019 * 0.02562 * 15 14 13 47 47 H 1.08002 * 119.83928 * 180.02562 * 16 15 14 48 48 H 1.08002 * 120.06101 * 179.72110 * 17 16 15 49 49 H 0.97006 * 119.99757 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.16050 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6222 2.4664 -0.0025 7 6 6.1041 1.8699 1.2505 8 6 6.2534 3.7713 -0.2413 9 6 7.7515 3.5764 -0.4835 10 7 8.3808 4.8775 -0.7223 11 6 9.7053 4.9520 -0.9603 12 8 10.3779 3.9392 -0.9765 13 7 10.2845 6.1490 -1.1795 14 6 11.6413 6.2190 -1.5156 15 6 12.0878 7.1928 -2.4058 16 6 13.4281 7.2714 -2.7449 17 6 14.3338 6.3830 -2.2100 18 6 13.8979 5.3966 -1.3055 19 6 14.8230 4.4842 -0.7476 20 1 14.5239 3.4657 -0.5486 21 6 16.1260 4.9010 -0.4531 22 7 16.5148 6.1083 -0.7738 23 14 17.3102 3.7334 0.3978 24 1 18.0559 2.9540 -0.6229 25 1 18.2680 4.5136 1.2220 26 1 16.5481 2.8046 1.2705 27 6 12.5360 5.3212 -0.9640 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6439 -0.8908 34 1 3.8575 0.6436 0.8891 35 1 3.8365 3.1236 0.8887 36 1 3.8357 3.1231 -0.8914 37 1 5.8652 2.5314 2.0832 38 1 5.6208 0.9049 1.4028 39 1 7.1837 1.7310 1.1950 40 1 6.1061 4.4108 0.6290 41 1 5.8017 4.2387 -1.1163 42 1 7.8986 2.9368 -1.3538 43 1 8.2031 3.1090 0.3914 44 1 7.8444 5.6856 -0.7083 45 1 9.7609 6.9621 -1.1043 46 1 11.3842 7.8917 -2.8336 47 1 13.7640 8.0306 -3.4358 48 1 15.3774 6.4453 -2.4809 49 1 17.4182 6.3970 -0.5700 50 1 12.1907 4.5658 -0.2736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455923808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:23 Heat of formation + Delta-G solvation = -47.471857 kcal Electronic energy + Delta-G solvation = -27416.019247 eV Core-core repulsion = 23443.340074 eV Total energy + Delta-G solvation = -3972.679174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.93667 -38.81622 -38.00976 -37.23876 -34.87017 -34.25124 -33.00185 -32.60298 -29.71550 -29.36509 -27.78069 -27.64247 -26.41054 -25.20222 -24.29020 -22.07493 -21.40498 -21.18813 -20.77358 -19.98548 -17.98527 -17.50858 -16.99765 -16.76325 -16.26423 -16.04016 -15.62786 -15.37024 -15.05973 -14.90838 -14.55948 -14.53424 -14.29318 -14.03698 -13.75214 -13.50728 -12.94799 -12.79607 -12.67165 -12.27536 -12.22115 -12.16922 -12.07901 -11.69324 -11.58592 -11.47701 -11.32760 -11.13029 -11.12457 -11.01026 -10.87594 -10.35851 -10.18330 -10.13841 -9.65189 -9.35915 -9.17153 -8.87549 -8.82474 -8.75037 -7.29363 -6.81424 -6.49020 -4.29245 2.73433 2.85634 3.01083 3.16283 3.19577 3.24140 3.28765 3.74009 3.78830 4.07101 4.43857 4.56850 4.61867 4.67753 4.71968 4.79942 4.81790 4.85096 4.90988 4.95832 5.00981 5.11684 5.16860 5.21326 5.25624 5.30849 5.59417 5.70695 5.73551 5.77074 5.82466 5.93042 6.28542 6.42727 6.50719 6.60882 6.69319 6.70970 6.83720 6.85293 7.11673 7.20512 7.34377 7.43502 7.78134 7.87716 8.06579 8.22631 8.35192 8.49061 8.78373 8.98965 9.07312 9.11063 10.40096 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.001636 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.346054 B =17114.390802 C =18267.104739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.118 4.118 5 C 0.060 3.940 6 N -0.537 5.537 7 C 0.014 3.986 8 C 0.046 3.954 9 C 0.143 3.857 10 N -0.752 5.752 11 C 0.698 3.302 12 O -0.564 6.564 13 N -0.681 5.681 14 C 0.157 3.843 15 C -0.251 4.251 16 C -0.100 4.100 17 C -0.161 4.161 18 C 0.113 3.887 19 C -0.461 4.461 20 H 0.076 0.924 21 C 0.071 3.929 22 N -0.815 5.815 23 Si 0.914 3.086 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.197 4.197 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.391 0.609 45 H 0.393 0.607 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.128 0.872 49 H 0.276 0.724 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.367 -3.348 3.053 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.156 4.156 5 C -0.068 4.068 6 N -0.261 5.261 7 C -0.134 4.134 8 C -0.082 4.082 9 C 0.018 3.982 10 N -0.410 5.410 11 C 0.399 3.601 12 O -0.439 6.439 13 N -0.327 5.327 14 C 0.065 3.935 15 C -0.272 4.272 16 C -0.119 4.119 17 C -0.181 4.181 18 C 0.110 3.890 19 C -0.492 4.492 20 H 0.094 0.906 21 C -0.144 4.144 22 N -0.443 5.443 23 Si 0.739 3.261 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.219 4.219 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.224 0.776 45 H 0.227 0.773 46 H 0.107 0.893 47 H 0.110 0.890 48 H 0.146 0.854 49 H 0.087 0.913 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.311 -4.668 2.678 26.855 hybrid contribution -0.526 1.276 1.158 1.802 sum -26.837 -3.392 3.836 27.321 Atomic orbital electron populations 1.22748 0.80917 1.02870 0.99967 1.87882 1.19782 1.28007 1.95418 1.22481 0.94155 0.84709 1.00129 1.21510 0.92282 0.97356 1.04404 1.21983 0.87168 0.96535 1.01111 1.61776 1.05504 1.23146 1.35660 1.22585 1.02080 0.99644 0.89094 1.22252 0.94676 0.90163 1.01105 1.21041 0.90281 0.84464 1.02436 1.45007 1.07383 1.09583 1.79031 1.15929 0.81393 0.84386 0.78423 1.90978 1.61812 1.34280 1.56848 1.42534 1.10508 1.06601 1.73095 1.17262 0.79886 0.99024 0.97369 1.20100 0.96052 1.04654 1.06423 1.20519 0.92723 0.98840 0.99805 1.21623 0.99680 0.98115 0.98633 1.17572 0.90581 0.91981 0.88856 1.19524 0.94655 0.98135 1.36858 0.90607 1.25842 0.98451 0.95391 0.94682 1.69767 1.18654 1.17330 1.38518 0.86225 0.79653 0.80535 0.79712 1.19551 1.20396 1.18755 1.21306 0.93120 1.02727 1.04725 0.94109 0.94013 0.89542 0.93465 0.93187 0.89931 0.90840 0.94596 0.90447 0.95412 0.90802 0.90417 0.94134 0.90089 0.90674 0.91567 0.77623 0.77335 0.89343 0.89010 0.85386 0.91328 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.66 16 3 C 0.06 0.40 5.94 37.16 0.22 0.62 16 4 C -0.12 -0.82 5.51 -26.73 -0.15 -0.97 16 5 C 0.06 0.40 4.96 -3.82 -0.02 0.38 16 6 N -0.54 -4.53 4.76 -242.91 -1.16 -5.68 16 7 C 0.01 0.11 9.13 60.07 0.55 0.66 16 8 C 0.05 0.38 5.07 -3.82 -0.02 0.36 16 9 C 0.14 1.67 5.60 -4.04 -0.02 1.65 16 10 N -0.75 -9.53 5.56 -65.23 -0.36 -9.89 16 11 C 0.70 12.86 8.40 -86.92 -0.73 12.13 16 12 O -0.56 -13.24 13.78 5.29 0.07 -13.16 16 13 N -0.68 -12.33 5.34 -14.27 -0.08 -12.41 16 14 C 0.16 3.62 6.29 -83.76 -0.53 3.09 16 15 C -0.25 -5.57 9.97 -39.10 -0.39 -5.96 16 16 C -0.10 -2.36 10.01 -39.70 -0.40 -2.76 16 17 C -0.16 -4.30 8.67 -38.84 -0.34 -4.64 16 18 C 0.11 3.18 5.55 -106.85 -0.59 2.59 16 19 C -0.46 -13.02 9.04 -37.74 -0.34 -13.36 16 20 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 21 C 0.07 1.86 5.42 -17.35 -0.09 1.77 16 22 N -0.81 -21.83 10.61 55.55 0.59 -21.25 16 23 Si 0.91 19.88 29.56 -169.99 -5.03 14.85 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 27 C -0.20 -5.25 8.43 -38.69 -0.33 -5.58 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 35 H 0.04 0.22 8.12 -51.93 -0.42 -0.20 16 36 H 0.08 0.46 7.93 -51.92 -0.41 0.04 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.55 6.30 -51.93 -0.33 0.22 16 39 H 0.08 0.71 6.47 -51.93 -0.34 0.37 16 40 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.86 6.55 -51.93 -0.34 0.52 16 44 H 0.39 3.52 8.49 -40.82 -0.35 3.17 16 45 H 0.39 5.41 8.84 -40.82 -0.36 5.05 16 46 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 48 H 0.13 3.54 6.15 -52.49 -0.32 3.22 16 49 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 50 H 0.11 3.16 6.22 -52.49 -0.33 2.83 16 LS Contribution 405.65 15.07 6.11 6.11 Total: -1.00 -33.46 405.65 -10.42 -43.88 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.14 Total: 9.93 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.06 Total: -8.73 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -1.01 Total: -49.23 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.30 Total: -16.82 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.46 -10.42 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455923808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.592 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds