Wall clock time and date at job start Tue Mar 31 2020 18:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00249 * 2 1 4 4 C 1.52996 * 109.47669 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47420 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47258 * 180.02562 * 5 4 3 7 7 C 1.46901 * 110.99810 * 293.95332 * 6 5 4 8 8 C 1.46901 * 110.99854 * 169.99993 * 6 5 4 9 9 C 1.53001 * 109.46800 * 189.99993 * 8 6 5 10 10 N 1.46496 * 109.47021 * 179.97438 * 9 8 6 11 11 C 1.34776 * 120.00374 * 179.97438 * 10 9 8 12 12 O 1.21588 * 119.99689 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00612 * 180.02562 * 11 10 9 14 14 C 1.39956 * 120.00280 * 184.30999 * 13 11 10 15 15 C 1.39290 * 119.94904 * 144.78318 * 14 13 11 16 16 C 1.38478 * 120.43066 * 179.97438 * 15 14 13 17 17 C 1.37681 * 120.32260 * 0.29488 * 16 15 14 18 18 C 1.40749 * 119.88209 * 359.48141 * 17 16 15 19 19 C 1.41405 * 120.20939 * 180.26422 * 18 17 16 20 20 H 1.08001 * 119.99912 * 214.94508 * 19 18 17 21 21 C 1.39935 * 119.99933 * 34.95249 * 19 18 17 22 22 N 1.30823 * 120.00024 * 355.53789 * 21 19 18 23 23 Si 1.86806 * 119.99782 * 175.54311 * 21 19 18 24 24 H 1.48501 * 109.46967 * 89.99555 * 23 21 19 25 25 H 1.48501 * 109.47036 * 209.99772 * 23 21 19 26 26 H 1.48501 * 109.46921 * 329.99791 * 23 21 19 27 27 C 1.38234 * 119.94572 * 324.80404 * 14 13 11 28 28 H 1.09004 * 109.47208 * 300.00059 * 1 2 3 29 29 H 1.08999 * 109.47125 * 60.00646 * 1 2 3 30 30 H 1.09003 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47458 * 59.99323 * 3 2 1 32 32 H 1.09010 * 109.46745 * 299.99807 * 3 2 1 33 33 H 1.08998 * 109.47038 * 59.99523 * 4 3 2 34 34 H 1.08999 * 109.47300 * 299.99837 * 4 3 2 35 35 H 1.08998 * 109.47223 * 59.99858 * 5 4 3 36 36 H 1.09010 * 109.47051 * 299.99784 * 5 4 3 37 37 H 1.09001 * 109.47141 * 296.04437 * 7 6 5 38 38 H 1.08999 * 109.47085 * 56.04454 * 7 6 5 39 39 H 1.08994 * 109.46971 * 176.04711 * 7 6 5 40 40 H 1.08997 * 109.46996 * 69.99790 * 8 6 5 41 41 H 1.09000 * 109.47134 * 309.99439 * 8 6 5 42 42 H 1.08996 * 109.47104 * 59.99762 * 9 8 6 43 43 H 1.09000 * 109.46825 * 299.99636 * 9 8 6 44 44 H 0.97003 * 119.99946 * 0.02562 * 10 9 8 45 45 H 0.97003 * 119.99566 * 4.30506 * 13 11 10 46 46 H 1.08004 * 119.78019 * 0.02562 * 15 14 13 47 47 H 1.08002 * 119.83928 * 180.02562 * 16 15 14 48 48 H 1.08002 * 120.06101 * 179.72110 * 17 16 15 49 49 H 0.97006 * 119.99757 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.16050 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6222 2.4664 -0.0025 7 6 6.1041 1.8699 1.2505 8 6 6.2534 3.7713 -0.2413 9 6 7.7515 3.5764 -0.4835 10 7 8.3808 4.8775 -0.7223 11 6 9.7053 4.9520 -0.9603 12 8 10.3779 3.9392 -0.9765 13 7 10.2845 6.1490 -1.1795 14 6 11.6413 6.2190 -1.5156 15 6 12.0878 7.1928 -2.4058 16 6 13.4281 7.2714 -2.7449 17 6 14.3338 6.3830 -2.2100 18 6 13.8979 5.3966 -1.3055 19 6 14.8230 4.4842 -0.7476 20 1 14.5239 3.4657 -0.5486 21 6 16.1260 4.9010 -0.4531 22 7 16.5148 6.1083 -0.7738 23 14 17.3102 3.7334 0.3978 24 1 18.0559 2.9540 -0.6229 25 1 18.2680 4.5136 1.2220 26 1 16.5481 2.8046 1.2705 27 6 12.5360 5.3212 -0.9640 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6439 -0.8908 34 1 3.8575 0.6436 0.8891 35 1 3.8365 3.1236 0.8887 36 1 3.8357 3.1231 -0.8914 37 1 5.8652 2.5314 2.0832 38 1 5.6208 0.9049 1.4028 39 1 7.1837 1.7310 1.1950 40 1 6.1061 4.4108 0.6290 41 1 5.8017 4.2387 -1.1163 42 1 7.8986 2.9368 -1.3538 43 1 8.2031 3.1090 0.3914 44 1 7.8444 5.6856 -0.7083 45 1 9.7609 6.9621 -1.1043 46 1 11.3842 7.8917 -2.8336 47 1 13.7640 8.0306 -3.4358 48 1 15.3774 6.4453 -2.4809 49 1 17.4182 6.3970 -0.5700 50 1 12.1907 4.5658 -0.2736 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455923808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:22 Heat of formation + Delta-G solvation = -71.908469 kcal Electronic energy + Delta-G solvation = -27417.078898 eV Core-core repulsion = 23443.340074 eV Total energy + Delta-G solvation = -3973.738825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44498 -39.52362 -39.09343 -38.48474 -36.26220 -35.83406 -34.77240 -33.37124 -31.69087 -30.56625 -29.06608 -28.30214 -27.22898 -27.00643 -25.03754 -23.38282 -22.70492 -22.42881 -21.87403 -21.52220 -19.60069 -19.17763 -17.72451 -17.41250 -17.26965 -17.11128 -16.86457 -16.62927 -16.39524 -16.14650 -15.87022 -15.63347 -15.33581 -15.02433 -14.95722 -14.70504 -14.52060 -14.23465 -13.92528 -13.54037 -13.18705 -13.00856 -12.96881 -12.86304 -12.79723 -12.74825 -12.66560 -12.37903 -12.13830 -12.07502 -12.03422 -11.96197 -11.66346 -11.54410 -11.20095 -11.02740 -10.67483 -10.61275 -10.12157 -9.36360 -9.27891 -8.68430 -8.44186 -6.38887 0.95795 1.04660 1.36782 1.46278 1.53194 1.62275 2.19370 2.24695 2.62738 2.82198 3.10506 3.44495 3.72340 3.82033 3.96532 4.04177 4.18086 4.22169 4.40414 4.46189 4.50914 4.51262 4.52452 4.54111 4.56401 4.62059 4.65040 4.75394 4.85299 4.86371 4.92282 5.03444 5.08754 5.15742 5.16903 5.18108 5.21363 5.26674 5.37844 5.44232 5.75322 5.87345 5.99966 6.03327 6.08488 6.18297 6.21345 6.25679 6.41539 6.74760 6.99942 7.04636 7.12912 7.61533 8.44309 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.001636 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.346054 B =17114.390802 C =18267.104739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.062 3.938 4 C -0.113 4.113 5 C 0.065 3.935 6 N -0.553 5.553 7 C 0.015 3.985 8 C 0.059 3.941 9 C 0.144 3.856 10 N -0.723 5.723 11 C 0.694 3.306 12 O -0.620 6.620 13 N -0.668 5.668 14 C 0.165 3.835 15 C -0.235 4.235 16 C -0.097 4.097 17 C -0.186 4.186 18 C 0.081 3.919 19 C -0.506 4.506 20 H 0.058 0.942 21 C 0.032 3.968 22 N -0.839 5.839 23 Si 0.985 3.015 24 H -0.260 1.260 25 H -0.262 1.262 26 H -0.268 1.268 27 C -0.224 4.224 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.415 0.585 45 H 0.419 0.581 46 H 0.136 0.864 47 H 0.125 0.875 48 H 0.112 0.888 49 H 0.285 0.715 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.708 -1.440 2.951 29.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.015 4.015 4 C -0.151 4.151 5 C -0.063 4.063 6 N -0.278 5.278 7 C -0.133 4.133 8 C -0.069 4.069 9 C 0.019 3.981 10 N -0.381 5.381 11 C 0.394 3.606 12 O -0.499 6.499 13 N -0.316 5.316 14 C 0.071 3.929 15 C -0.257 4.257 16 C -0.116 4.116 17 C -0.206 4.206 18 C 0.078 3.922 19 C -0.537 4.537 20 H 0.076 0.924 21 C -0.180 4.180 22 N -0.467 5.467 23 Si 0.806 3.194 24 H -0.185 1.185 25 H -0.186 1.186 26 H -0.193 1.193 27 C -0.246 4.246 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.252 0.748 45 H 0.257 0.743 46 H 0.154 0.846 47 H 0.143 0.857 48 H 0.129 0.871 49 H 0.095 0.905 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -28.752 -2.697 2.575 28.992 hybrid contribution 0.012 0.716 1.139 1.345 sum -28.740 -1.981 3.714 29.047 Atomic orbital electron populations 1.22909 0.79507 1.03692 1.00914 1.87837 1.21495 1.29236 1.95634 1.22532 0.93451 0.84283 1.01192 1.21449 0.93036 0.97478 1.03176 1.21984 0.85665 0.96364 1.02260 1.61729 1.06824 1.23397 1.35860 1.22539 1.01046 1.00196 0.89476 1.22131 0.91688 0.90478 1.02620 1.21076 0.92776 0.83446 1.00775 1.44706 1.05369 1.11177 1.76898 1.16179 0.82790 0.83563 0.78076 1.90962 1.63624 1.36217 1.59098 1.42254 1.08892 1.07823 1.72680 1.17317 0.81561 0.97736 0.96333 1.20542 0.96271 1.04206 1.04645 1.20896 0.92981 0.98355 0.99388 1.21556 0.99703 0.99498 0.99839 1.17888 0.91459 0.93007 0.89834 1.19672 0.96573 0.97865 1.39577 0.92357 1.26644 0.99376 0.97148 0.94802 1.69820 1.19472 1.18544 1.38864 0.85175 0.77273 0.78297 0.78697 1.18454 1.18609 1.19283 1.21237 0.93606 1.03829 1.05937 0.93085 0.93089 0.88931 0.92264 0.92132 0.91607 0.91645 0.93347 0.89214 0.94548 0.90427 0.92133 0.92501 0.88197 0.92814 0.93202 0.74814 0.74314 0.84642 0.85685 0.87057 0.90472 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.70 10.70 -148.98 -1.59 -8.29 16 3 C 0.06 0.70 5.94 71.98 0.43 1.13 16 4 C -0.11 -1.46 5.51 30.59 0.17 -1.29 16 5 C 0.06 0.71 4.96 86.30 0.43 1.13 16 6 N -0.55 -8.52 4.76 -922.44 -4.39 -12.91 16 7 C 0.02 0.24 9.13 127.69 1.17 1.41 16 8 C 0.06 0.83 5.07 86.30 0.44 1.27 16 9 C 0.14 3.29 5.60 86.38 0.48 3.77 16 10 N -0.72 -17.05 5.56 -478.55 -2.66 -19.71 16 11 C 0.69 25.21 8.40 179.06 1.50 26.71 16 12 O -0.62 -30.19 13.78 -3.99 -0.06 -30.25 16 13 N -0.67 -22.96 5.34 -317.33 -1.69 -24.66 16 14 C 0.16 7.47 6.29 38.10 0.24 7.71 16 15 C -0.24 -9.80 9.97 22.58 0.23 -9.57 16 16 C -0.10 -4.46 10.01 22.20 0.22 -4.24 16 17 C -0.19 -10.20 8.67 22.75 0.20 -10.00 16 18 C 0.08 4.77 5.55 -21.31 -0.12 4.65 16 19 C -0.51 -30.37 9.04 23.46 0.21 -30.15 16 20 H 0.06 3.53 7.85 -2.91 -0.02 3.51 16 21 C 0.03 1.75 5.42 85.25 0.46 2.21 16 22 N -0.84 -46.14 10.61 21.82 0.23 -45.91 16 23 Si 0.98 41.88 29.56 68.60 2.03 43.91 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 C -0.22 -12.43 8.43 22.85 0.19 -12.24 16 28 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.93 6.47 -2.39 -0.02 0.92 16 35 H 0.05 0.43 8.12 -2.39 -0.02 0.41 16 36 H 0.09 0.78 7.93 -2.38 -0.02 0.76 16 37 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 1.13 6.30 -2.39 -0.02 1.12 16 39 H 0.06 1.15 6.47 -2.39 -0.02 1.13 16 40 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 41 H 0.10 1.07 7.93 -2.39 -0.02 1.05 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.33 6.55 -2.39 -0.02 1.31 16 44 H 0.41 6.00 8.49 -92.71 -0.79 5.21 16 45 H 0.42 9.98 8.84 -92.71 -0.82 9.16 16 46 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 47 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 48 H 0.11 6.39 6.15 -2.91 -0.02 6.37 16 49 H 0.28 14.12 8.30 -92.70 -0.77 13.35 16 50 H 0.09 5.29 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -78.13 405.65 -1.30 -79.43 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.65 Total: 34.43 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 7.50 Total: -16.04 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -8.52 Total: -103.19 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.65 Total: -38.54 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -78.13 -1.30 -79.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455923808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.518 kcal (2) G-P(sol) polarization free energy of solvation -78.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds