Wall clock time and date at job start Tue Mar 31 2020 18:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99492 * 2 1 4 4 H 1.09000 * 112.88654 * 338.15636 * 3 2 1 5 5 C 1.53949 * 113.66143 * 109.50719 * 3 2 1 6 6 C 1.53947 * 87.29968 * 89.73080 * 5 3 2 7 7 H 1.09001 * 113.66579 * 270.17140 * 6 5 3 8 8 N 1.46895 * 113.66451 * 139.20194 * 6 5 3 9 9 C 1.46904 * 110.99682 * 106.01438 * 8 6 5 10 10 C 1.50705 * 109.46882 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00139 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99568 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99671 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47177 * 270.00034 * 13 12 10 15 15 H 1.08006 * 120.00358 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00140 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99837 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47193 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47455 * 119.99774 * 18 16 14 21 21 H 1.48508 * 109.47106 * 239.99760 * 18 16 14 22 22 C 1.46496 * 120.00230 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47294 * 269.99918 * 22 12 10 24 24 C 1.47206 * 109.47168 * 179.97438 * 23 22 12 25 25 N 8.57886 * 127.83664 * 104.08724 * 2 1 3 26 26 C 1.52915 * 86.87974 * 24.68915 * 6 5 3 27 27 C 1.52915 * 121.14020 * 209.42287 * 26 6 5 28 28 C 1.53943 * 86.78327 * 209.37702 * 27 26 6 29 29 C 1.52913 * 121.13726 * 100.86239 * 26 6 5 30 30 H 1.08995 * 109.47337 * 299.99643 * 1 2 3 31 31 H 1.08997 * 109.47105 * 60.00195 * 1 2 3 32 32 H 1.09004 * 109.46841 * 179.97438 * 1 2 3 33 33 H 1.09006 * 113.58074 * 335.13029 * 5 3 2 34 34 H 1.09002 * 113.58202 * 204.34042 * 5 3 2 35 35 H 1.00896 * 111.00660 * 229.96919 * 8 6 5 36 36 H 1.08999 * 109.46655 * 60.00647 * 9 8 6 37 37 H 1.08990 * 109.47337 * 300.00305 * 9 8 6 38 38 H 1.09003 * 109.47246 * 30.00194 * 13 12 10 39 39 H 1.08997 * 109.47278 * 150.00017 * 13 12 10 40 40 H 0.97011 * 119.99775 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47054 * 149.99650 * 22 12 10 42 42 H 1.09004 * 109.47074 * 30.00164 * 22 12 10 43 43 H 1.09001 * 109.46832 * 60.00150 * 23 22 12 44 44 H 1.08996 * 109.46952 * 300.00131 * 23 22 12 45 45 H 1.08999 * 113.66230 * 323.85358 * 27 26 6 46 46 H 1.09002 * 113.65649 * 94.90739 * 27 26 6 47 47 H 1.09003 * 113.58414 * 270.13785 * 28 27 26 48 48 H 1.09002 * 113.65255 * 139.34836 * 28 27 26 49 49 H 1.09001 * 113.66006 * 265.09092 * 29 26 6 50 50 H 1.08995 * 113.66261 * 36.15420 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3310 2.0718 -0.3736 5 6 2.6916 1.6785 1.3291 6 6 3.9819 1.0650 0.7558 7 1 4.0935 0.0020 0.9695 8 7 5.1910 1.8399 1.0647 9 6 5.9962 1.1706 2.0950 10 6 7.2257 1.9927 2.3844 11 8 7.4125 3.0339 1.7911 12 7 8.1176 1.5708 3.3026 13 6 9.3125 2.3703 3.5843 14 6 10.4308 1.9417 2.6697 15 1 10.2677 1.1529 1.9501 16 6 11.6622 2.5564 2.7514 17 7 11.8607 3.5172 3.6273 18 14 13.0483 2.0256 1.6172 19 1 12.5716 0.9339 0.7303 20 1 13.4821 3.1810 0.7913 21 1 14.1932 1.5393 2.4285 22 6 7.8922 0.3129 4.0188 23 6 7.0944 0.5884 5.2949 24 6 6.8674 -0.6757 6.0142 25 7 6.6914 -1.6491 6.5715 26 6 3.4046 1.3551 -0.6302 27 6 3.7615 0.4822 -1.8340 28 6 3.5490 1.7384 -2.6981 29 6 3.8639 2.5681 -1.4401 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2962 1.1373 2.1888 34 1 2.7576 2.7532 1.4988 35 1 5.7359 2.0073 0.2321 36 1 6.2945 0.1844 1.7392 37 1 5.4065 1.0653 3.0055 38 1 9.0916 3.4247 3.4187 39 1 9.6136 2.2207 4.6212 40 1 12.7270 3.9500 3.6845 41 1 8.8518 -0.1337 4.2795 42 1 7.3335 -0.3728 3.3818 43 1 6.1348 1.0349 5.0341 44 1 7.6531 1.2741 5.9318 45 1 4.7915 0.1258 -1.8259 46 1 3.0390 -0.3103 -2.0291 47 1 2.5249 1.8557 -3.0526 48 1 4.2870 1.8530 -3.4920 49 1 3.2233 3.4418 -1.3206 50 1 4.9227 2.7979 -1.3214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459758274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:45 Heat of formation + Delta-G solvation = -0.111822 kcal Electronic energy + Delta-G solvation = -29359.192862 eV Core-core repulsion = 25388.567374 eV Total energy + Delta-G solvation = -3970.625488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99486 -39.21124 -37.32464 -36.85672 -35.54569 -35.07729 -33.10790 -32.65349 -30.81379 -28.21690 -27.04987 -26.08185 -25.81222 -24.66901 -23.98704 -23.40095 -22.19789 -20.91751 -18.75166 -18.26442 -17.58389 -17.07949 -16.51884 -16.34029 -16.12579 -15.87398 -15.53142 -15.21678 -15.05195 -14.73580 -14.56423 -14.34424 -13.97977 -13.72335 -13.42341 -13.05804 -12.87269 -12.61210 -12.48739 -12.41258 -12.31708 -12.16854 -12.07861 -11.96240 -11.83547 -11.58722 -11.50550 -11.26954 -11.15055 -10.96810 -10.84494 -10.63380 -10.48903 -10.31825 -10.19200 -10.13527 -9.68270 -9.56852 -8.96901 -8.47471 -8.31259 -7.81571 -6.08711 -4.13201 2.75059 2.83320 3.27708 3.27861 3.33143 3.36488 3.40333 3.59240 4.07433 4.25329 4.32075 4.39514 4.45063 4.60725 4.66451 4.71193 4.78984 4.93466 4.99504 5.06328 5.12622 5.13808 5.16504 5.26579 5.27112 5.33986 5.35780 5.40727 5.48294 5.56304 5.62972 5.68097 5.75126 5.82565 5.84910 5.88604 5.89759 6.01864 6.09201 6.22647 6.34899 6.86072 6.96425 7.12287 7.37760 7.44400 7.45953 7.59151 7.87744 8.18097 8.29525 8.85737 9.02399 9.52424 10.99393 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003067 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.591635 B = 9126.303753 C =11085.458700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.086 3.914 4 H 0.075 0.925 5 C -0.142 4.142 6 C 0.079 3.921 7 H 0.076 0.924 8 N -0.657 5.657 9 C 0.037 3.963 10 C 0.507 3.493 11 O -0.520 6.520 12 N -0.599 5.599 13 C 0.245 3.755 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.118 3.882 23 C -0.051 4.051 24 C 0.218 3.782 25 N -0.446 5.446 26 C -0.104 4.104 27 C -0.125 4.125 28 C -0.143 4.143 29 C -0.104 4.104 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.351 0.649 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 -5.115 -6.739 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.028 3.972 4 H 0.093 0.907 5 C -0.180 4.180 6 C -0.031 4.031 7 H 0.094 0.906 8 N -0.291 5.291 9 C -0.096 4.096 10 C 0.292 3.708 11 O -0.395 6.395 12 N -0.332 5.332 13 C 0.126 3.874 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.008 4.008 23 C -0.092 4.092 24 C -0.100 4.100 25 N -0.124 5.124 26 C -0.105 4.105 27 C -0.162 4.162 28 C -0.180 4.180 29 C -0.142 4.142 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.173 0.827 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.421 -5.611 -5.720 22.871 hybrid contribution 1.110 -0.502 -1.105 1.645 sum -20.311 -6.113 -6.826 22.282 Atomic orbital electron populations 1.22793 0.81048 1.02677 0.99972 1.87868 1.19464 1.26534 1.94570 1.22732 0.92872 0.84871 0.96760 0.90719 1.23574 0.95565 1.02272 0.96637 1.22762 0.90012 0.95777 0.94562 0.90590 1.60314 1.07879 1.46822 1.14062 1.22002 0.94102 0.95744 0.97710 1.20256 0.83695 0.86432 0.80373 1.90691 1.76059 1.23869 1.48863 1.48211 1.24020 1.22376 1.38555 1.19333 0.79799 0.91869 0.96358 1.21450 0.95640 1.19886 1.19619 0.92421 1.24918 0.98640 0.94841 0.95618 1.69934 1.23921 1.24192 1.35171 0.86474 0.81862 0.78559 0.80696 1.19842 1.20886 1.21005 1.21288 1.00955 0.87638 0.90959 1.19916 1.03798 0.88357 0.97174 1.29100 0.92843 0.94646 0.93457 1.81176 1.09397 1.11877 1.09936 1.23000 0.95185 0.98973 0.93299 1.22651 1.01729 0.96835 0.94998 1.22865 1.01489 0.96767 0.96877 1.22542 1.02370 0.95389 0.93887 0.93954 0.94102 0.89664 0.91205 0.88303 0.82703 0.92852 0.88798 0.93533 0.94792 0.92737 0.88826 0.90810 0.87525 0.86471 0.90102 0.90889 0.90612 0.91348 0.91152 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.86 101.05 1.10 1.31 16 2 O -0.37 -3.59 10.20 -35.23 -0.36 -3.95 16 3 C 0.09 0.80 4.16 -26.18 -0.11 0.69 16 4 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 5 C -0.14 -1.41 7.72 -25.75 -0.20 -1.61 16 6 C 0.08 0.86 3.95 -67.27 -0.27 0.60 16 7 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 8 N -0.66 -8.61 5.93 -107.52 -0.64 -9.24 16 9 C 0.04 0.49 4.58 -4.97 -0.02 0.47 16 10 C 0.51 9.26 7.71 -10.98 -0.08 9.17 16 11 O -0.52 -11.93 15.78 5.55 0.09 -11.84 16 12 N -0.60 -10.88 2.46 -175.06 -0.43 -11.31 16 13 C 0.25 5.79 5.16 -5.20 -0.03 5.77 16 14 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 15 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 18 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 1.58 5.17 -4.05 -0.02 1.55 16 23 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 24 C 0.22 2.66 15.43 -20.78 -0.32 2.34 16 25 N -0.45 -6.64 18.53 42.13 0.78 -5.86 16 26 C -0.10 -1.02 0.92 -154.60 -0.14 -1.16 16 27 C -0.12 -1.19 7.72 -26.28 -0.20 -1.39 16 28 C -0.14 -1.23 8.08 -25.75 -0.21 -1.44 16 29 C -0.10 -1.00 7.38 -26.28 -0.19 -1.20 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.35 4.95 6.66 -39.29 -0.26 4.69 16 36 H 0.05 0.65 7.39 -51.93 -0.38 0.26 16 37 H 0.09 1.05 7.19 -51.93 -0.37 0.68 16 38 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 39 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 42 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 43 H 0.11 0.94 7.22 -51.93 -0.37 0.56 16 44 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.71 7.83 -51.93 -0.41 0.31 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 1.03 6.71 -51.93 -0.35 0.68 16 LS Contribution 413.07 15.07 6.22 6.22 Total: -1.00 -32.54 413.07 -8.21 -40.76 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.30 Total: 2.17 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.65 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.45 Total: -51.18 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.27 Total: -15.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.54 -8.21 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.645 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds