Wall clock time and date at job start Tue Mar 31 2020 18:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99492 * 2 1 4 4 H 1.09000 * 112.88654 * 338.15636 * 3 2 1 5 5 C 1.53949 * 113.66143 * 109.50719 * 3 2 1 6 6 C 1.53947 * 87.29968 * 89.73080 * 5 3 2 7 7 H 1.09001 * 113.66579 * 270.17140 * 6 5 3 8 8 N 1.46895 * 113.66451 * 139.20194 * 6 5 3 9 9 C 1.46904 * 110.99682 * 106.01438 * 8 6 5 10 10 C 1.50705 * 109.46882 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00139 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99568 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99671 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47177 * 270.00034 * 13 12 10 15 15 H 1.08006 * 120.00358 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00140 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99837 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.47193 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47455 * 119.99774 * 18 16 14 21 21 H 1.48508 * 109.47106 * 239.99760 * 18 16 14 22 22 C 1.46496 * 120.00230 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47294 * 269.99918 * 22 12 10 24 24 C 1.47206 * 109.47168 * 179.97438 * 23 22 12 25 25 N 8.57886 * 127.83664 * 104.08724 * 2 1 3 26 26 C 1.52915 * 86.87974 * 24.68915 * 6 5 3 27 27 C 1.52915 * 121.14020 * 209.42287 * 26 6 5 28 28 C 1.53943 * 86.78327 * 209.37702 * 27 26 6 29 29 C 1.52913 * 121.13726 * 100.86239 * 26 6 5 30 30 H 1.08995 * 109.47337 * 299.99643 * 1 2 3 31 31 H 1.08997 * 109.47105 * 60.00195 * 1 2 3 32 32 H 1.09004 * 109.46841 * 179.97438 * 1 2 3 33 33 H 1.09006 * 113.58074 * 335.13029 * 5 3 2 34 34 H 1.09002 * 113.58202 * 204.34042 * 5 3 2 35 35 H 1.00896 * 111.00660 * 229.96919 * 8 6 5 36 36 H 1.08999 * 109.46655 * 60.00647 * 9 8 6 37 37 H 1.08990 * 109.47337 * 300.00305 * 9 8 6 38 38 H 1.09003 * 109.47246 * 30.00194 * 13 12 10 39 39 H 1.08997 * 109.47278 * 150.00017 * 13 12 10 40 40 H 0.97011 * 119.99775 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47054 * 149.99650 * 22 12 10 42 42 H 1.09004 * 109.47074 * 30.00164 * 22 12 10 43 43 H 1.09001 * 109.46832 * 60.00150 * 23 22 12 44 44 H 1.08996 * 109.46952 * 300.00131 * 23 22 12 45 45 H 1.08999 * 113.66230 * 323.85358 * 27 26 6 46 46 H 1.09002 * 113.65649 * 94.90739 * 27 26 6 47 47 H 1.09003 * 113.58414 * 270.13785 * 28 27 26 48 48 H 1.09002 * 113.65255 * 139.34836 * 28 27 26 49 49 H 1.09001 * 113.66006 * 265.09092 * 29 26 6 50 50 H 1.08995 * 113.66261 * 36.15420 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3310 2.0718 -0.3736 5 6 2.6916 1.6785 1.3291 6 6 3.9819 1.0650 0.7558 7 1 4.0935 0.0020 0.9695 8 7 5.1910 1.8399 1.0647 9 6 5.9962 1.1706 2.0950 10 6 7.2257 1.9927 2.3844 11 8 7.4125 3.0339 1.7911 12 7 8.1176 1.5708 3.3026 13 6 9.3125 2.3703 3.5843 14 6 10.4308 1.9417 2.6697 15 1 10.2677 1.1529 1.9501 16 6 11.6622 2.5564 2.7514 17 7 11.8607 3.5172 3.6273 18 14 13.0483 2.0256 1.6172 19 1 12.5716 0.9339 0.7303 20 1 13.4821 3.1810 0.7913 21 1 14.1932 1.5393 2.4285 22 6 7.8922 0.3129 4.0188 23 6 7.0944 0.5884 5.2949 24 6 6.8674 -0.6757 6.0142 25 7 6.6914 -1.6491 6.5715 26 6 3.4046 1.3551 -0.6302 27 6 3.7615 0.4822 -1.8340 28 6 3.5490 1.7384 -2.6981 29 6 3.8639 2.5681 -1.4401 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2962 1.1373 2.1888 34 1 2.7576 2.7532 1.4988 35 1 5.7359 2.0073 0.2321 36 1 6.2945 0.1844 1.7392 37 1 5.4065 1.0653 3.0055 38 1 9.0916 3.4247 3.4187 39 1 9.6136 2.2207 4.6212 40 1 12.7270 3.9500 3.6845 41 1 8.8518 -0.1337 4.2795 42 1 7.3335 -0.3728 3.3818 43 1 6.1348 1.0349 5.0341 44 1 7.6531 1.2741 5.9318 45 1 4.7915 0.1258 -1.8259 46 1 3.0390 -0.3103 -2.0291 47 1 2.5249 1.8557 -3.0526 48 1 4.2870 1.8530 -3.4920 49 1 3.2233 3.4418 -1.3206 50 1 4.9227 2.7979 -1.3214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459758274.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:44 Heat of formation + Delta-G solvation = -20.780894 kcal Electronic energy + Delta-G solvation = -29360.089140 eV Core-core repulsion = 25388.567374 eV Total energy + Delta-G solvation = -3971.521767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77400 -40.63239 -38.03490 -37.95229 -36.74458 -36.24086 -34.85964 -33.76690 -32.13233 -29.76442 -27.87768 -27.22195 -26.58298 -25.45699 -25.29158 -24.59235 -23.52788 -21.67968 -20.04504 -19.14952 -18.76069 -18.32598 -18.09989 -17.42810 -17.16372 -16.77295 -16.61089 -16.38473 -16.12867 -15.80065 -15.61756 -15.48236 -15.07223 -14.71363 -14.60714 -14.23262 -14.21275 -13.69508 -13.56678 -13.52791 -13.43926 -13.24676 -13.09293 -12.89130 -12.86073 -12.73065 -12.69016 -12.60933 -12.51171 -12.23957 -12.16174 -11.89457 -11.82493 -11.62939 -11.24277 -11.05767 -10.90848 -10.58150 -10.45101 -10.26224 -9.44024 -9.29581 -8.16832 -6.28986 1.39478 1.41953 1.52255 1.69832 1.84760 1.95029 2.26280 2.44973 2.63616 3.07235 3.15163 3.34096 3.51088 3.62300 3.81991 3.87018 3.89063 3.96350 4.04584 4.07169 4.13576 4.31465 4.37741 4.45831 4.54252 4.58181 4.61762 4.62645 4.66028 4.83322 4.85074 4.89230 4.91109 4.99929 5.06928 5.10186 5.11763 5.13999 5.14483 5.24580 5.36754 5.47609 5.60604 5.63307 5.89422 6.10956 6.15071 6.33668 6.38656 6.60819 6.78571 6.85308 7.36515 7.57616 8.89992 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010424 B = 0.003067 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.591635 B = 9126.303753 C =11085.458700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.093 3.907 4 H 0.088 0.912 5 C -0.138 4.138 6 C 0.077 3.923 7 H 0.076 0.924 8 N -0.668 5.668 9 C 0.050 3.950 10 C 0.502 3.498 11 O -0.576 6.576 12 N -0.599 5.599 13 C 0.260 3.740 14 C -0.537 4.537 15 H 0.053 0.947 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.958 3.042 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.114 3.886 23 C -0.038 4.038 24 C 0.246 3.754 25 N -0.489 5.489 26 C -0.104 4.104 27 C -0.125 4.125 28 C -0.134 4.134 29 C -0.107 4.107 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.343 0.657 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.003 0.997 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.883 -6.526 -7.264 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C 0.035 3.965 4 H 0.106 0.894 5 C -0.177 4.177 6 C -0.033 4.033 7 H 0.094 0.906 8 N -0.300 5.300 9 C -0.082 4.082 10 C 0.290 3.710 11 O -0.454 6.454 12 N -0.331 5.331 13 C 0.139 3.861 14 C -0.576 4.576 15 H 0.071 0.929 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.010 4.010 23 C -0.079 4.079 24 C -0.071 4.071 25 N -0.167 5.167 26 C -0.105 4.105 27 C -0.162 4.162 28 C -0.171 4.171 29 C -0.144 4.144 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.091 0.909 37 H 0.141 0.859 38 H 0.022 0.978 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.153 0.847 44 H 0.138 0.862 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.105 -7.075 -6.223 24.953 hybrid contribution 1.586 -0.053 -0.944 1.846 sum -21.520 -7.128 -7.168 23.776 Atomic orbital electron populations 1.22972 0.79542 1.03701 1.00814 1.87840 1.21167 1.26684 1.94617 1.22660 0.92717 0.85213 0.95954 0.89447 1.23528 0.94995 1.01884 0.97260 1.22833 0.89277 0.95497 0.95682 0.90595 1.60355 1.08308 1.47652 1.13726 1.21969 0.91959 0.95102 0.99177 1.21161 0.84660 0.86077 0.79092 1.90665 1.77487 1.26518 1.50764 1.48083 1.22455 1.23367 1.39162 1.18782 0.81268 0.90391 0.95633 1.21772 0.96641 1.19482 1.19703 0.92910 1.25726 1.01160 0.94949 0.97038 1.70037 1.24589 1.25305 1.36701 0.85513 0.79156 0.78098 0.78903 1.19229 1.21074 1.19957 1.21496 1.01551 0.85709 0.92286 1.19835 1.04798 0.87651 0.95612 1.29124 0.91441 0.94100 0.92455 1.81220 1.11042 1.13138 1.11305 1.23028 0.95691 0.98936 0.92835 1.22623 1.01272 0.97070 0.95248 1.22842 1.02216 0.95693 0.96399 1.22501 1.01481 0.95753 0.94696 0.93260 0.93102 0.88641 0.90760 0.88836 0.83684 0.90910 0.85876 0.97847 0.94891 0.92608 0.89842 0.87848 0.84705 0.86173 0.90789 0.90985 0.89423 0.91170 0.90689 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.86 113.37 1.23 1.52 16 2 O -0.38 -6.67 10.20 -148.98 -1.52 -8.19 16 3 C 0.09 1.53 4.16 30.95 0.13 1.66 16 4 H 0.09 1.21 7.90 -2.39 -0.02 1.19 16 5 C -0.14 -2.48 7.72 31.23 0.24 -2.24 16 6 C 0.08 1.55 3.95 45.21 0.18 1.73 16 7 H 0.08 1.55 7.88 -2.39 -0.02 1.53 16 8 N -0.67 -16.78 5.93 -494.07 -2.93 -19.71 16 9 C 0.05 1.22 4.58 85.56 0.39 1.61 16 10 C 0.50 18.14 7.71 87.66 0.68 18.82 16 11 O -0.58 -27.18 15.78 -3.04 -0.05 -27.22 16 12 N -0.60 -21.50 2.46 -826.16 -2.03 -23.53 16 13 C 0.26 12.61 5.16 85.63 0.44 13.05 16 14 C -0.54 -29.01 9.39 25.60 0.24 -28.77 16 15 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 18 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 C 0.11 2.82 5.17 86.38 0.45 3.27 16 23 C -0.04 -0.70 6.03 28.79 0.17 -0.53 16 24 C 0.25 5.45 15.43 89.45 1.38 6.83 16 25 N -0.49 -13.72 18.53 20.00 0.37 -13.35 16 26 C -0.10 -1.90 0.92 -52.24 -0.05 -1.95 16 27 C -0.12 -2.22 7.72 30.88 0.24 -1.98 16 28 C -0.13 -2.13 8.08 31.23 0.25 -1.88 16 29 C -0.11 -1.97 7.38 30.89 0.23 -1.74 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.34 9.66 6.66 -89.70 -0.60 9.06 16 36 H 0.07 1.54 7.39 -2.39 -0.02 1.52 16 37 H 0.12 2.30 7.19 -2.39 -0.02 2.28 16 38 H 0.00 0.19 7.42 -2.39 -0.02 0.18 16 39 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 40 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 41 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 42 H 0.10 1.97 6.44 -2.38 -0.02 1.96 16 43 H 0.14 1.85 7.22 -2.39 -0.02 1.83 16 44 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.30 7.83 -2.39 -0.02 1.28 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.08 1.73 6.71 -2.39 -0.02 1.72 16 Total: -1.00 -72.49 413.07 3.16 -69.33 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.34 Total: 20.12 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.66 Total: 10.42 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -4.30 Total: -110.20 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.57 Total: -35.42 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.49 3.16 -69.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758274.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.551 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds