Wall clock time and date at job start Tue Mar 31 2020 18:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99685 * 2 1 4 4 H 1.09007 * 112.88730 * 338.16132 * 3 2 1 5 5 C 1.53949 * 113.66615 * 109.50698 * 3 2 1 6 6 C 1.53944 * 87.30034 * 139.20202 * 5 3 2 7 7 H 1.09001 * 113.66219 * 89.83272 * 6 5 3 8 8 N 1.46898 * 113.66712 * 220.79853 * 6 5 3 9 9 C 1.46902 * 110.99607 * 253.98846 * 8 6 5 10 10 C 1.50702 * 109.46898 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00224 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00009 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99794 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.47418 * 270.00014 * 13 12 10 15 15 H 1.08003 * 119.99532 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00028 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99900 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99822 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47144 * 90.00023 * 18 16 14 20 20 H 1.48498 * 109.46887 * 210.00177 * 18 16 14 21 21 H 1.48501 * 109.46926 * 329.99897 * 18 16 14 22 22 C 1.46496 * 120.00061 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47294 * 89.99672 * 22 12 10 24 24 C 1.47206 * 109.47168 * 179.97438 * 23 22 12 25 25 N 9.82783 * 114.12752 * 30.73343 * 2 1 3 26 26 C 1.52905 * 86.88364 * 335.31702 * 6 5 3 27 27 C 1.52917 * 121.13738 * 259.13190 * 26 6 5 28 28 C 1.53953 * 86.78288 * 209.38117 * 27 26 6 29 29 C 1.52914 * 121.14159 * 150.57260 * 26 6 5 30 30 H 1.09003 * 109.47236 * 299.99560 * 1 2 3 31 31 H 1.08989 * 109.47603 * 60.00115 * 1 2 3 32 32 H 1.08998 * 109.46745 * 180.02562 * 1 2 3 33 33 H 1.09005 * 113.57487 * 24.60219 * 5 3 2 34 34 H 1.09002 * 113.65394 * 253.82477 * 5 3 2 35 35 H 1.00896 * 110.99636 * 17.93834 * 8 6 5 36 36 H 1.08995 * 109.47498 * 59.99928 * 9 8 6 37 37 H 1.08999 * 109.47369 * 299.99518 * 9 8 6 38 38 H 1.08998 * 109.47404 * 30.00542 * 13 12 10 39 39 H 1.09000 * 109.46960 * 150.00371 * 13 12 10 40 40 H 0.96999 * 119.99452 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.47054 * 329.99404 * 22 12 10 42 42 H 1.09004 * 109.47074 * 209.99918 * 22 12 10 43 43 H 1.09001 * 109.46832 * 60.00150 * 23 22 12 44 44 H 1.08996 * 109.46952 * 300.00131 * 23 22 12 45 45 H 1.08999 * 113.65552 * 323.85245 * 27 26 6 46 46 H 1.08994 * 113.66126 * 94.90581 * 27 26 6 47 47 H 1.09001 * 113.57428 * 270.12582 * 28 27 26 48 48 H 1.08997 * 113.57626 * 139.33846 * 28 27 26 49 49 H 1.08998 * 113.65676 * 265.08838 * 29 26 6 50 50 H 1.08997 * 113.66277 * 36.04741 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3310 2.0719 -0.3736 5 6 2.6916 1.6785 1.3291 6 6 3.8158 2.3133 0.4905 7 1 3.6461 3.3640 0.2553 8 7 5.1623 2.0563 1.0185 9 6 5.7183 3.2600 1.6511 10 6 7.0972 2.9586 2.1790 11 8 7.5701 1.8502 2.0423 12 7 7.8050 3.9209 2.8031 13 6 9.1453 3.6278 3.3169 14 6 9.0422 3.1343 4.7371 15 1 8.0749 3.0474 5.2096 16 6 10.1826 2.7939 5.4332 17 7 11.3605 2.9003 4.8579 18 14 10.0547 2.1816 7.1933 19 1 9.9122 0.7035 7.1941 20 1 11.2810 2.5611 7.9398 21 1 8.8691 2.7936 7.8453 22 6 7.2337 5.2597 2.9688 23 6 6.4643 5.3260 4.2896 24 6 5.8907 6.6714 4.4563 25 7 5.4463 7.7096 4.5837 26 6 3.4040 1.3592 -0.6311 27 6 4.1949 0.0809 -0.9120 28 6 3.7496 0.2309 -2.3781 29 6 3.5943 1.7371 -2.1005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.0156 0.8151 1.9103 34 1 2.1290 2.4000 1.9216 35 1 5.1559 1.2795 1.6625 36 1 5.0734 3.5691 2.4736 37 1 5.7786 4.0621 0.9155 38 1 9.6117 2.8607 2.6986 39 1 9.7508 4.5337 3.2901 40 1 12.1628 2.6612 5.3478 41 1 6.5551 5.4699 2.1421 42 1 8.0353 5.9983 2.9777 43 1 7.1429 5.1158 5.1163 44 1 5.6628 4.5874 4.2806 45 1 5.2697 0.1909 -0.7678 46 1 3.7882 -0.8023 -0.4194 47 1 2.8080 -0.2708 -2.6012 48 1 4.5344 -0.0012 -3.0980 49 1 2.7078 2.1770 -2.5574 50 1 4.4995 2.3140 -2.2902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459758279.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:47 Heat of formation + Delta-G solvation = -22.384830 kcal Electronic energy + Delta-G solvation = -29421.332918 eV Core-core repulsion = 25449.741599 eV Total energy + Delta-G solvation = -3971.591319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67345 -40.61118 -37.97203 -37.83515 -36.77144 -36.36686 -34.79209 -33.69829 -32.06283 -29.77075 -27.91984 -27.19789 -26.47079 -25.44536 -25.12381 -24.48789 -23.41155 -21.82736 -20.02889 -19.21963 -18.92074 -18.06351 -17.85627 -17.35206 -17.28346 -16.65890 -16.56696 -16.37757 -16.18980 -15.74665 -15.46085 -15.32069 -15.01430 -14.79934 -14.36736 -14.16844 -14.09491 -13.85475 -13.69969 -13.49028 -13.27045 -13.15981 -13.10561 -12.93706 -12.83868 -12.78203 -12.71175 -12.51706 -12.41818 -12.14055 -12.06879 -11.90654 -11.75523 -11.54531 -11.26044 -11.09137 -10.95453 -10.54577 -10.42141 -10.20725 -9.43421 -9.13398 -8.12794 -6.24698 1.43756 1.46465 1.54150 1.71378 1.86240 2.01177 2.26702 2.47762 2.82708 3.15338 3.19527 3.41084 3.53772 3.66339 3.80457 3.84005 3.93369 4.02934 4.09460 4.11487 4.21060 4.33752 4.45620 4.50769 4.55103 4.57566 4.61087 4.68108 4.70034 4.79979 4.89751 4.90586 4.94654 5.05915 5.09174 5.10486 5.14675 5.17221 5.18037 5.31566 5.39172 5.60292 5.68085 5.71665 5.91831 6.16371 6.17887 6.37551 6.43274 6.62906 6.82626 6.89201 7.40884 7.61351 8.94590 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.002858 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.528622 B = 9796.288045 C =10676.536095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.090 3.910 4 H 0.109 0.891 5 C -0.181 4.181 6 C 0.085 3.915 7 H 0.122 0.878 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.500 3.500 11 O -0.579 6.579 12 N -0.600 5.600 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.069 0.931 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.956 3.044 19 H -0.286 1.286 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.119 3.881 23 C -0.042 4.042 24 C 0.247 3.753 25 N -0.489 5.489 26 C -0.093 4.093 27 C -0.105 4.105 28 C -0.136 4.136 29 C -0.115 4.115 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.345 0.655 36 H 0.086 0.914 37 H 0.123 0.877 38 H -0.004 1.004 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.736 0.948 -11.064 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C 0.031 3.969 4 H 0.126 0.874 5 C -0.220 4.220 6 C -0.025 4.025 7 H 0.140 0.860 8 N -0.301 5.301 9 C -0.080 4.080 10 C 0.288 3.712 11 O -0.458 6.458 12 N -0.332 5.332 13 C 0.138 3.862 14 C -0.566 4.566 15 H 0.087 0.913 16 C -0.191 4.191 17 N -0.572 5.572 18 Si 0.781 3.219 19 H -0.213 1.213 20 H -0.212 1.212 21 H -0.178 1.178 22 C -0.006 4.006 23 C -0.083 4.083 24 C -0.070 4.070 25 N -0.167 5.167 26 C -0.095 4.095 27 C -0.143 4.143 28 C -0.173 4.173 29 C -0.152 4.152 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.164 0.836 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.014 0.986 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.147 0.853 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.515 1.855 -11.510 25.354 hybrid contribution 0.345 -0.898 1.914 2.142 sum -22.170 0.957 -9.596 24.177 Atomic orbital electron populations 1.22922 0.80125 1.03397 1.00694 1.87941 1.20832 1.27917 1.94615 1.23351 0.92621 0.85326 0.95566 0.87355 1.24152 0.99138 1.01141 0.97595 1.22689 0.85181 0.99549 0.95068 0.85979 1.59939 1.22106 1.06119 1.41975 1.21970 0.90931 0.94987 1.00136 1.21274 0.88372 0.84012 0.77504 1.90681 1.72043 1.24376 1.58655 1.48102 1.17610 1.11417 1.56035 1.18786 0.79166 0.95317 0.92935 1.21785 0.93185 1.43340 0.98332 0.91262 1.25769 0.95091 0.95904 1.02363 1.70055 0.98489 1.49755 1.38912 0.85588 0.78068 0.78248 0.79969 1.21265 1.21188 1.17809 1.21527 0.98791 0.83915 0.96330 1.19885 1.01284 0.85218 1.01930 1.29192 0.91741 0.94390 0.91647 1.81252 1.11751 1.13341 1.10397 1.22977 0.94517 0.97248 0.94718 1.22254 0.99329 0.96184 0.96513 1.22781 1.01124 0.97132 0.96287 1.22656 1.02184 0.96168 0.94225 0.93441 0.92930 0.89303 0.90796 0.89561 0.83575 0.89589 0.85917 0.98583 0.95664 0.92844 0.86794 0.89591 0.86899 0.85340 0.90798 0.92882 0.90325 0.91941 0.90421 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.86 113.37 1.23 1.53 16 2 O -0.39 -7.40 9.92 -148.98 -1.48 -8.87 16 3 C 0.09 1.40 4.18 30.95 0.13 1.53 16 4 H 0.11 1.21 7.90 -2.38 -0.02 1.19 16 5 C -0.18 -2.91 7.55 31.23 0.24 -2.67 16 6 C 0.09 1.44 4.04 45.20 0.18 1.63 16 7 H 0.12 1.53 7.88 -2.39 -0.02 1.51 16 8 N -0.67 -15.83 5.44 -494.09 -2.69 -18.52 16 9 C 0.05 1.12 4.57 85.56 0.39 1.51 16 10 C 0.50 17.43 7.71 87.66 0.68 18.11 16 11 O -0.58 -27.18 15.78 -3.04 -0.05 -27.23 16 12 N -0.60 -20.80 2.46 -826.15 -2.03 -22.83 16 13 C 0.26 12.42 5.20 85.64 0.45 12.87 16 14 C -0.53 -26.94 8.92 25.60 0.23 -26.71 16 15 H 0.07 3.32 7.42 -2.91 -0.02 3.30 16 16 C 0.01 0.39 5.46 84.66 0.46 0.86 16 17 N -0.93 -54.14 13.29 21.45 0.28 -53.85 16 18 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 22 C 0.12 2.72 5.21 86.38 0.45 3.17 16 23 C -0.04 -0.87 6.03 28.79 0.17 -0.70 16 24 C 0.25 5.61 15.44 89.44 1.38 6.99 16 25 N -0.49 -13.65 18.54 20.01 0.37 -13.28 16 26 C -0.09 -1.69 1.08 -52.24 -0.06 -1.75 16 27 C -0.11 -2.41 7.15 30.89 0.22 -2.19 16 28 C -0.14 -2.57 8.08 31.23 0.25 -2.32 16 29 C -0.12 -1.89 7.85 30.88 0.24 -1.65 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.50 7.82 -2.38 -0.02 1.48 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.34 9.50 7.91 -89.70 -0.71 8.79 16 36 H 0.09 1.36 7.19 -2.39 -0.02 1.35 16 37 H 0.12 2.03 7.39 -2.39 -0.02 2.01 16 38 H 0.00 -0.23 7.42 -2.39 -0.02 -0.25 16 39 H 0.03 1.24 7.89 -2.39 -0.02 1.22 16 40 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.11 1.71 6.44 -2.39 -0.02 1.70 16 42 H 0.09 2.03 7.89 -2.38 -0.02 2.01 16 43 H 0.11 2.88 7.26 -2.39 -0.02 2.87 16 44 H 0.13 2.07 7.22 -2.39 -0.02 2.05 16 45 H 0.07 2.03 7.77 -2.39 -0.02 2.01 16 46 H 0.05 1.34 7.66 -2.39 -0.02 1.33 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.79 412.09 3.32 -69.48 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.23 Total: 20.46 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.65 Total: 10.20 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.06 Total: -108.47 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.53 Total: -36.10 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -72.79 3.32 -69.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758279.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.093 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds