Wall clock time and date at job start Tue Mar 31 2020 18:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00204 * 2 1 4 4 H 1.09000 * 112.88102 * 21.83432 * 3 2 1 5 5 C 1.53950 * 113.66140 * 250.49558 * 3 2 1 6 6 C 1.53951 * 87.29389 * 220.79125 * 5 3 2 7 7 H 1.08996 * 113.66624 * 270.26200 * 6 5 3 8 8 N 1.46899 * 113.66005 * 139.29534 * 6 5 3 9 9 C 1.46903 * 110.99775 * 104.50760 * 8 6 5 10 10 C 1.50701 * 109.46990 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00118 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00023 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00472 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47224 * 89.99628 * 13 12 10 15 15 H 1.08008 * 120.00221 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00386 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00500 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99592 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47280 * 89.99893 * 18 16 14 20 20 H 1.48501 * 109.46837 * 210.00120 * 18 16 14 21 21 H 1.48501 * 109.46723 * 329.99615 * 18 16 14 22 22 C 1.46503 * 120.00068 * 359.97438 * 12 10 9 23 23 C 1.52997 * 109.47255 * 90.00071 * 22 12 10 24 24 C 1.47197 * 109.47278 * 180.02562 * 23 22 12 25 25 N 8.77275 * 151.33349 * 148.24482 * 3 1 2 26 26 C 1.52912 * 113.66439 * 153.30459 * 3 2 1 27 27 C 1.52910 * 121.13544 * 13.65489 * 26 3 2 28 28 C 1.53945 * 86.78263 * 209.37923 * 27 26 3 29 29 C 1.52902 * 121.13876 * 265.09308 * 26 3 2 30 30 H 1.09002 * 109.47260 * 59.99940 * 1 2 3 31 31 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47147 * 300.00424 * 1 2 3 33 33 H 1.09000 * 113.58003 * 335.39588 * 5 3 2 34 34 H 1.08997 * 113.58386 * 106.11267 * 5 3 2 35 35 H 1.00897 * 111.00415 * 340.55175 * 8 6 5 36 36 H 1.09002 * 109.47064 * 299.99627 * 9 8 6 37 37 H 1.08999 * 109.47334 * 59.99843 * 9 8 6 38 38 H 1.08992 * 109.47512 * 210.00171 * 13 12 10 39 39 H 1.09006 * 109.46776 * 330.00119 * 13 12 10 40 40 H 0.96998 * 120.00426 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.47124 * 210.00058 * 22 12 10 42 42 H 1.08998 * 109.47074 * 330.00078 * 22 12 10 43 43 H 1.09003 * 109.47044 * 300.00036 * 23 22 12 44 44 H 1.08998 * 109.47074 * 60.00007 * 23 22 12 45 45 H 1.09000 * 113.65973 * 323.85500 * 27 26 3 46 46 H 1.08999 * 113.66322 * 94.90255 * 27 26 3 47 47 H 1.09000 * 113.57758 * 270.13162 * 28 27 26 48 48 H 1.08992 * 113.57983 * 139.33504 * 28 27 26 49 49 H 1.09006 * 113.66082 * 265.09265 * 29 26 3 50 50 H 1.08992 * 113.66459 * 36.04834 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3311 2.0718 0.3735 5 6 2.6917 1.6784 -1.3292 6 6 3.8159 2.3132 -0.4905 7 1 3.6455 3.3635 -0.2540 8 7 5.1622 2.0579 -1.0198 9 6 5.7025 3.2523 -1.6827 10 6 7.0817 2.9530 -2.2111 11 8 7.5670 1.8532 -2.0508 12 7 7.7763 3.9079 -2.8609 13 6 9.1169 3.6168 -3.3751 14 6 9.0115 3.0899 -4.7830 15 1 8.0427 2.9829 -5.2485 16 6 10.1516 2.7443 -5.4770 17 7 10.0596 2.2840 -6.7054 18 14 11.8271 2.9287 -4.6717 19 1 12.1767 1.6715 -3.9630 20 1 12.8481 3.2107 -5.7125 21 1 11.7882 4.0507 -3.6996 22 6 7.1903 5.2366 -3.0541 23 6 7.5591 6.1336 -1.8708 24 6 6.9698 7.4685 -2.0645 25 7 6.5170 8.4989 -2.2148 26 6 3.4030 1.3572 0.6292 27 6 4.1927 0.0778 0.9078 28 6 4.8467 0.8390 2.0752 29 6 3.5930 1.7322 2.0993 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.0156 0.8151 -1.9104 34 1 2.1277 2.3991 -1.9212 35 1 5.1607 1.2665 -1.6457 36 1 5.0502 3.5358 -2.5088 37 1 5.7582 4.0717 -0.9661 38 1 9.7131 4.5292 -3.3723 39 1 9.5943 2.8688 -2.7420 40 1 10.8617 2.0413 -7.1938 41 1 7.5761 5.6735 -3.9752 42 1 6.1058 5.1494 -3.1197 43 1 7.1733 5.6968 -0.9496 44 1 8.6436 6.2208 -1.8051 45 1 3.5712 -0.7596 1.2250 46 1 4.8901 -0.1876 0.1133 47 1 5.7557 1.3708 1.7942 48 1 4.9695 0.2357 2.9746 49 1 3.8114 2.7885 2.2566 50 1 2.8022 1.3613 2.7511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459758282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:51 Heat of formation + Delta-G solvation = 2.902628 kcal Electronic energy + Delta-G solvation = -29432.985624 eV Core-core repulsion = 25462.490852 eV Total energy + Delta-G solvation = -3970.494772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93336 -39.34676 -37.24752 -36.95175 -35.65320 -35.19483 -33.11788 -32.62674 -31.02843 -28.64237 -27.18760 -26.22715 -25.62492 -24.63986 -24.05969 -23.12565 -21.93936 -21.09184 -18.92720 -18.14891 -17.70112 -17.03325 -16.84549 -16.37011 -16.22484 -16.06252 -15.57883 -15.24397 -14.97445 -14.74570 -14.61608 -14.31183 -13.88782 -13.56691 -13.33877 -13.25128 -13.01054 -12.66617 -12.51931 -12.49438 -12.36309 -12.24724 -12.20815 -12.03127 -11.79125 -11.67667 -11.58192 -11.38321 -11.18809 -11.08548 -10.90718 -10.57253 -10.47566 -10.39973 -10.22000 -10.15046 -9.60373 -9.42966 -9.11458 -8.63182 -8.31859 -7.90946 -6.12870 -4.12536 2.65445 2.73988 3.23202 3.26097 3.31031 3.33717 3.38428 3.58388 4.01692 4.25574 4.28676 4.35664 4.38680 4.49723 4.67287 4.76710 4.88312 4.92856 4.95336 5.00497 5.04037 5.10436 5.14101 5.21194 5.26081 5.29154 5.37405 5.38848 5.49683 5.51863 5.54625 5.66535 5.72257 5.77644 5.84168 5.87143 5.99673 5.99901 6.26027 6.40726 6.53486 6.56869 6.84078 6.97352 7.02692 7.20575 7.35926 7.49906 7.55214 8.08893 8.40917 8.84860 8.91306 9.46858 11.00395 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.002978 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.712380 B = 9400.941770 C =10598.795333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.073 3.927 4 H 0.085 0.915 5 C -0.186 4.186 6 C 0.095 3.905 7 H 0.101 0.899 8 N -0.653 5.653 9 C 0.038 3.962 10 C 0.509 3.491 11 O -0.517 6.517 12 N -0.594 5.594 13 C 0.216 3.784 14 C -0.531 4.531 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.118 3.882 23 C -0.051 4.051 24 C 0.216 3.784 25 N -0.443 5.443 26 C -0.089 4.089 27 C -0.099 4.099 28 C -0.132 4.132 29 C -0.126 4.126 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.357 0.643 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 1.401 16.318 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.015 3.985 4 H 0.103 0.897 5 C -0.226 4.226 6 C -0.016 4.016 7 H 0.119 0.881 8 N -0.285 5.285 9 C -0.094 4.094 10 C 0.295 3.705 11 O -0.391 6.391 12 N -0.327 5.327 13 C 0.095 3.905 14 C -0.570 4.570 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.009 4.009 23 C -0.093 4.093 24 C -0.102 4.102 25 N -0.120 5.120 26 C -0.090 4.090 27 C -0.136 4.136 28 C -0.169 4.169 29 C -0.163 4.163 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.178 0.822 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.047 2.216 16.595 23.191 hybrid contribution 0.237 0.022 -0.657 0.699 sum -15.809 2.239 15.938 22.561 Atomic orbital electron populations 1.22765 0.81655 1.02577 0.99688 1.87960 1.19076 1.27196 1.94521 1.23386 0.93685 0.85038 0.96419 0.89729 1.24251 0.99137 1.01564 0.97599 1.22450 0.86651 0.98036 0.94505 0.88130 1.59983 1.20601 1.05942 1.41978 1.21961 0.94528 0.94653 0.98262 1.20257 0.86862 0.84930 0.78481 1.90704 1.69781 1.22111 1.56544 1.47879 1.19168 1.09991 1.55633 1.19704 0.78514 0.96722 0.95523 1.21300 0.95322 1.43711 0.96642 0.90765 1.24858 0.99031 0.94384 0.94683 1.69886 1.29319 1.43603 1.10637 0.86865 0.84206 0.79300 0.79384 1.19864 1.21163 1.18973 1.21318 0.98949 0.83509 0.97094 1.19908 1.02686 0.84478 1.02198 1.29057 0.93300 0.94702 0.93161 1.81199 1.09856 1.12299 1.08691 1.22934 0.93148 0.98565 0.94315 1.22294 0.97852 0.94797 0.98675 1.22762 0.97674 0.98363 0.98127 1.22723 0.98618 0.99912 0.95066 0.94214 0.89841 0.94275 0.88782 0.91321 0.82162 0.92507 0.88702 0.95065 0.94222 0.92510 0.88576 0.90450 0.87436 0.86643 0.90157 0.90475 0.89282 0.92331 0.91665 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.86 101.05 1.10 1.32 16 2 O -0.37 -3.83 10.02 -35.23 -0.35 -4.18 16 3 C 0.07 0.67 4.17 -26.28 -0.11 0.56 16 4 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 5 C -0.19 -1.76 7.55 -25.75 -0.19 -1.96 16 6 C 0.09 0.91 4.03 -67.26 -0.27 0.64 16 7 H 0.10 0.84 7.90 -51.93 -0.41 0.43 16 8 N -0.65 -7.94 5.40 -107.51 -0.58 -8.53 16 9 C 0.04 0.46 4.58 -4.97 -0.02 0.44 16 10 C 0.51 8.77 7.71 -10.99 -0.08 8.69 16 11 O -0.52 -11.38 15.78 5.56 0.09 -11.29 16 12 N -0.59 -10.15 2.46 -175.06 -0.43 -10.58 16 13 C 0.22 4.68 4.23 -5.20 -0.02 4.66 16 14 C -0.53 -14.23 9.94 -34.44 -0.34 -14.58 16 15 H 0.07 2.20 8.06 -52.48 -0.42 1.77 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 18 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 22 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 23 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 24 C 0.22 2.41 15.43 -20.78 -0.32 2.09 16 25 N -0.44 -6.18 18.53 42.14 0.78 -5.39 16 26 C -0.09 -0.86 1.07 -154.71 -0.17 -1.03 16 27 C -0.10 -1.09 7.16 -26.29 -0.19 -1.28 16 28 C -0.13 -1.35 8.08 -25.75 -0.21 -1.56 16 29 C -0.13 -1.13 7.84 -26.29 -0.21 -1.34 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 1.03 7.83 -51.93 -0.41 0.62 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.36 4.93 7.69 -39.29 -0.30 4.63 16 36 H 0.06 0.62 7.40 -51.93 -0.38 0.23 16 37 H 0.09 0.89 7.17 -51.93 -0.37 0.52 16 38 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 39 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 42 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 43 H 0.11 0.78 7.22 -51.93 -0.37 0.41 16 44 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 46 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -33.60 410.17 -7.87 -41.47 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.33 Total: 3.07 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.33 Total: -0.64 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.54 Total: -50.51 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.27 Total: -15.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.60 -7.87 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.374 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds