Wall clock time and date at job start Tue Mar 31 2020 18:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00204 * 2 1 4 4 H 1.09000 * 112.88102 * 21.83432 * 3 2 1 5 5 C 1.53950 * 113.66140 * 250.49558 * 3 2 1 6 6 C 1.53951 * 87.29389 * 220.79125 * 5 3 2 7 7 H 1.08996 * 113.66624 * 270.26200 * 6 5 3 8 8 N 1.46899 * 113.66005 * 139.29534 * 6 5 3 9 9 C 1.46903 * 110.99775 * 104.50760 * 8 6 5 10 10 C 1.50701 * 109.46990 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00118 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00023 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00472 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47224 * 89.99628 * 13 12 10 15 15 H 1.08008 * 120.00221 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00386 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00500 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99592 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47280 * 89.99893 * 18 16 14 20 20 H 1.48501 * 109.46837 * 210.00120 * 18 16 14 21 21 H 1.48501 * 109.46723 * 329.99615 * 18 16 14 22 22 C 1.46503 * 120.00068 * 359.97438 * 12 10 9 23 23 C 1.52997 * 109.47255 * 90.00071 * 22 12 10 24 24 C 1.47197 * 109.47278 * 180.02562 * 23 22 12 25 25 N 8.77275 * 151.33349 * 148.24482 * 3 1 2 26 26 C 1.52912 * 113.66439 * 153.30459 * 3 2 1 27 27 C 1.52910 * 121.13544 * 13.65489 * 26 3 2 28 28 C 1.53945 * 86.78263 * 209.37923 * 27 26 3 29 29 C 1.52902 * 121.13876 * 265.09308 * 26 3 2 30 30 H 1.09002 * 109.47260 * 59.99940 * 1 2 3 31 31 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47147 * 300.00424 * 1 2 3 33 33 H 1.09000 * 113.58003 * 335.39588 * 5 3 2 34 34 H 1.08997 * 113.58386 * 106.11267 * 5 3 2 35 35 H 1.00897 * 111.00415 * 340.55175 * 8 6 5 36 36 H 1.09002 * 109.47064 * 299.99627 * 9 8 6 37 37 H 1.08999 * 109.47334 * 59.99843 * 9 8 6 38 38 H 1.08992 * 109.47512 * 210.00171 * 13 12 10 39 39 H 1.09006 * 109.46776 * 330.00119 * 13 12 10 40 40 H 0.96998 * 120.00426 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.47124 * 210.00058 * 22 12 10 42 42 H 1.08998 * 109.47074 * 330.00078 * 22 12 10 43 43 H 1.09003 * 109.47044 * 300.00036 * 23 22 12 44 44 H 1.08998 * 109.47074 * 60.00007 * 23 22 12 45 45 H 1.09000 * 113.65973 * 323.85500 * 27 26 3 46 46 H 1.08999 * 113.66322 * 94.90255 * 27 26 3 47 47 H 1.09000 * 113.57758 * 270.13162 * 28 27 26 48 48 H 1.08992 * 113.57983 * 139.33504 * 28 27 26 49 49 H 1.09006 * 113.66082 * 265.09265 * 29 26 3 50 50 H 1.08992 * 113.66459 * 36.04834 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3311 2.0718 0.3735 5 6 2.6917 1.6784 -1.3292 6 6 3.8159 2.3132 -0.4905 7 1 3.6455 3.3635 -0.2540 8 7 5.1622 2.0579 -1.0198 9 6 5.7025 3.2523 -1.6827 10 6 7.0817 2.9530 -2.2111 11 8 7.5670 1.8532 -2.0508 12 7 7.7763 3.9079 -2.8609 13 6 9.1169 3.6168 -3.3751 14 6 9.0115 3.0899 -4.7830 15 1 8.0427 2.9829 -5.2485 16 6 10.1516 2.7443 -5.4770 17 7 10.0596 2.2840 -6.7054 18 14 11.8271 2.9287 -4.6717 19 1 12.1767 1.6715 -3.9630 20 1 12.8481 3.2107 -5.7125 21 1 11.7882 4.0507 -3.6996 22 6 7.1903 5.2366 -3.0541 23 6 7.5591 6.1336 -1.8708 24 6 6.9698 7.4685 -2.0645 25 7 6.5170 8.4989 -2.2148 26 6 3.4030 1.3572 0.6292 27 6 4.1927 0.0778 0.9078 28 6 4.8467 0.8390 2.0752 29 6 3.5930 1.7322 2.0993 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.0156 0.8151 -1.9104 34 1 2.1277 2.3991 -1.9212 35 1 5.1607 1.2665 -1.6457 36 1 5.0502 3.5358 -2.5088 37 1 5.7582 4.0717 -0.9661 38 1 9.7131 4.5292 -3.3723 39 1 9.5943 2.8688 -2.7420 40 1 10.8617 2.0413 -7.1938 41 1 7.5761 5.6735 -3.9752 42 1 6.1058 5.1494 -3.1197 43 1 7.1733 5.6968 -0.9496 44 1 8.6436 6.2208 -1.8051 45 1 3.5712 -0.7596 1.2250 46 1 4.8901 -0.1876 0.1133 47 1 5.7557 1.3708 1.7942 48 1 4.9695 0.2357 2.9746 49 1 3.8114 2.7885 2.2566 50 1 2.8022 1.3613 2.7511 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459758282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:50 Heat of formation + Delta-G solvation = -20.007001 kcal Electronic energy + Delta-G solvation = -29433.979060 eV Core-core repulsion = 25462.490852 eV Total energy + Delta-G solvation = -3971.488208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70466 -40.65919 -38.00992 -37.91889 -36.76779 -36.28387 -34.80936 -33.78689 -32.28250 -30.16805 -27.99779 -27.23622 -26.45206 -25.40408 -25.19036 -24.28439 -23.25978 -21.84753 -20.08938 -19.19563 -19.03675 -18.40229 -17.92680 -17.35591 -17.26087 -16.93903 -16.44702 -16.37106 -16.15631 -15.72064 -15.62541 -15.37574 -15.04709 -14.63857 -14.42644 -14.40420 -14.23922 -13.74555 -13.72577 -13.51809 -13.47114 -13.18646 -13.14951 -13.01555 -12.91355 -12.75548 -12.62195 -12.46401 -12.37653 -12.13239 -11.96305 -11.90319 -11.83058 -11.67578 -11.24076 -11.14242 -10.94691 -10.76324 -10.50798 -10.13392 -9.40922 -9.20374 -8.27226 -6.31448 1.39060 1.43625 1.50489 1.72388 1.88501 1.92651 2.25615 2.37282 2.82015 3.08001 3.16335 3.36503 3.55417 3.64256 3.80144 3.81098 3.93994 4.01631 4.08273 4.14128 4.14376 4.31721 4.43598 4.49113 4.52860 4.56741 4.59972 4.68841 4.72873 4.79590 4.85198 4.89029 4.91100 4.95491 5.00004 5.02747 5.09884 5.14032 5.14845 5.21233 5.35253 5.54644 5.63234 5.66932 5.71511 6.11713 6.31230 6.31744 6.41162 6.64682 6.71691 6.77491 7.29874 7.53508 8.89711 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.002978 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.712380 B = 9400.941770 C =10598.795333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.077 3.923 4 H 0.108 0.892 5 C -0.186 4.186 6 C 0.099 3.901 7 H 0.128 0.872 8 N -0.666 5.666 9 C 0.050 3.950 10 C 0.501 3.499 11 O -0.575 6.575 12 N -0.596 5.596 13 C 0.223 3.777 14 C -0.531 4.531 15 H 0.029 0.971 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.944 3.056 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.227 1.227 22 C 0.112 3.888 23 C -0.037 4.037 24 C 0.246 3.754 25 N -0.492 5.492 26 C -0.091 4.091 27 C -0.105 4.105 28 C -0.132 4.132 29 C -0.113 4.113 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.342 0.658 36 H 0.075 0.925 37 H 0.135 0.865 38 H 0.059 0.941 39 H 0.023 0.977 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.074 0.926 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 3.792 19.017 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.126 0.874 5 C -0.226 4.226 6 C -0.012 4.012 7 H 0.146 0.854 8 N -0.297 5.297 9 C -0.081 4.081 10 C 0.290 3.710 11 O -0.454 6.454 12 N -0.328 5.328 13 C 0.101 3.899 14 C -0.570 4.570 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.767 3.233 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.149 1.149 22 C -0.012 4.012 23 C -0.078 4.078 24 C -0.072 4.072 25 N -0.170 5.170 26 C -0.092 4.092 27 C -0.143 4.143 28 C -0.169 4.169 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.158 0.842 44 H 0.144 0.856 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.016 4.673 19.321 26.166 hybrid contribution 0.425 -0.830 -1.563 1.820 sum -16.591 3.843 17.758 24.604 Atomic orbital electron populations 1.22922 0.80181 1.03378 1.00660 1.87932 1.20833 1.28089 1.94620 1.23461 0.93678 0.85236 0.95797 0.87429 1.24189 0.99448 1.01057 0.97877 1.22592 0.85143 0.99357 0.94082 0.85432 1.60001 1.22409 1.05554 1.41695 1.21987 0.90940 0.95534 0.99685 1.21245 0.88411 0.83865 0.77458 1.90680 1.71374 1.24508 1.58827 1.47842 1.17837 1.12011 1.55079 1.19366 0.81602 0.96995 0.91966 1.21632 0.93333 1.42994 0.99011 0.95291 1.25855 1.03772 0.94189 0.95154 1.70058 1.30531 1.45810 1.12707 0.85776 0.78428 0.80176 0.78946 1.20555 1.21001 1.14906 1.21526 1.00214 0.81494 0.97998 1.19862 1.03402 0.82709 1.01849 1.29171 0.91946 0.94414 0.91636 1.81250 1.11588 1.13889 1.10255 1.22937 0.93552 0.97568 0.95120 1.22245 0.97869 0.95688 0.98463 1.22711 0.97840 0.98618 0.97762 1.22665 0.97658 1.00332 0.94342 0.93630 0.89302 0.92808 0.91182 0.89902 0.83862 0.90735 0.84768 0.92336 0.95896 0.92577 0.90021 0.87870 0.84201 0.85554 0.90748 0.93112 0.90732 0.91868 0.90277 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.86 113.37 1.23 1.55 16 2 O -0.40 -7.78 10.02 -148.98 -1.49 -9.27 16 3 C 0.08 1.24 4.17 30.89 0.13 1.37 16 4 H 0.11 1.25 7.90 -2.39 -0.02 1.23 16 5 C -0.19 -3.23 7.55 31.23 0.24 -3.00 16 6 C 0.10 1.65 4.03 45.21 0.18 1.83 16 7 H 0.13 1.49 7.90 -2.39 -0.02 1.47 16 8 N -0.67 -15.41 5.40 -494.06 -2.67 -18.08 16 9 C 0.05 1.06 4.58 85.56 0.39 1.45 16 10 C 0.50 16.81 7.71 87.66 0.68 17.49 16 11 O -0.58 -25.91 15.78 -3.03 -0.05 -25.96 16 12 N -0.60 -19.46 2.46 -826.17 -2.03 -21.49 16 13 C 0.22 9.48 4.23 85.63 0.36 9.84 16 14 C -0.53 -29.16 9.94 25.60 0.25 -28.90 16 15 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 16 C 0.01 0.44 5.47 84.66 0.46 0.90 16 17 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 18 Si 0.94 42.38 27.47 68.60 1.88 44.27 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 22 C 0.11 2.43 5.17 86.38 0.45 2.88 16 23 C -0.04 -0.53 6.03 28.79 0.17 -0.35 16 24 C 0.25 4.62 15.43 89.45 1.38 6.00 16 25 N -0.49 -12.51 18.53 20.00 0.37 -12.14 16 26 C -0.09 -1.60 1.07 -52.31 -0.06 -1.66 16 27 C -0.10 -2.35 7.16 30.88 0.22 -2.13 16 28 C -0.13 -2.59 8.08 31.23 0.25 -2.34 16 29 C -0.11 -1.72 7.84 30.88 0.24 -1.48 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.07 1.56 7.83 -2.39 -0.02 1.55 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.34 9.73 7.69 -89.70 -0.69 9.04 16 36 H 0.07 1.36 7.40 -2.39 -0.02 1.34 16 37 H 0.13 1.80 7.17 -2.39 -0.02 1.78 16 38 H 0.06 2.19 7.13 -2.39 -0.02 2.17 16 39 H 0.02 1.07 6.85 -2.38 -0.02 1.05 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 42 H 0.10 1.72 6.44 -2.39 -0.02 1.70 16 43 H 0.14 1.20 7.22 -2.39 -0.02 1.18 16 44 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.71 7.84 -2.39 -0.02 1.69 16 46 H 0.05 1.38 7.40 -2.39 -0.02 1.36 16 47 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -79.18 410.17 3.10 -76.09 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.19 Total: 21.79 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.59 Total: 3.46 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.03 Total: -110.37 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.54 Total: -35.23 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Total: -79.18 3.10 -76.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.081 kcal (2) G-P(sol) polarization free energy of solvation -79.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds