Wall clock time and date at job start Tue Mar 31 2020 18:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99509 * 2 1 4 4 H 1.09006 * 112.89013 * 21.83813 * 3 2 1 5 5 C 1.53954 * 113.66403 * 250.49041 * 3 2 1 6 6 C 1.53948 * 87.29642 * 270.17485 * 5 3 2 7 7 H 1.08994 * 113.66779 * 89.82727 * 6 5 3 8 8 N 1.46901 * 113.66003 * 220.79384 * 6 5 3 9 9 C 1.46893 * 111.00145 * 255.49369 * 8 6 5 10 10 C 1.50702 * 109.47331 * 180.02562 * 9 8 6 11 11 O 1.21274 * 119.99922 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99922 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99914 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46944 * 89.99757 * 13 12 10 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47364 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46883 * 120.00040 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99850 * 18 16 14 22 22 C 1.46499 * 119.99751 * 359.97438 * 12 10 9 23 23 C 1.52996 * 109.47296 * 270.00006 * 22 12 10 24 24 C 1.47203 * 109.47160 * 180.02562 * 23 22 12 25 25 N 8.64803 * 140.09703 * 237.12681 * 2 1 3 26 26 C 1.52916 * 86.78251 * 335.26137 * 6 5 3 27 27 C 1.52907 * 121.13869 * 259.18774 * 26 6 5 28 28 C 1.53955 * 86.77774 * 209.37916 * 27 26 6 29 29 C 1.52911 * 121.13477 * 150.61755 * 26 6 5 30 30 H 1.09000 * 109.46953 * 60.00660 * 1 2 3 31 31 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47695 * 299.99979 * 1 2 3 33 33 H 1.08994 * 113.58079 * 155.56680 * 5 3 2 34 34 H 1.09000 * 113.64641 * 24.78725 * 5 3 2 35 35 H 1.00904 * 111.00051 * 131.54040 * 8 6 5 36 36 H 1.08998 * 109.47467 * 59.99567 * 9 8 6 37 37 H 1.09005 * 109.46799 * 299.99891 * 9 8 6 38 38 H 1.09000 * 109.46609 * 329.99939 * 13 12 10 39 39 H 1.08999 * 109.46486 * 210.00018 * 13 12 10 40 40 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 41 41 H 1.09003 * 109.47206 * 30.00889 * 22 12 10 42 42 H 1.09008 * 109.46526 * 150.00269 * 22 12 10 43 43 H 1.08995 * 109.47390 * 300.00428 * 23 22 12 44 44 H 1.09001 * 109.46971 * 60.00239 * 23 22 12 45 45 H 1.09003 * 113.66046 * 323.84361 * 27 26 6 46 46 H 1.08994 * 113.66776 * 94.90800 * 27 26 6 47 47 H 1.08993 * 113.57783 * 270.12433 * 28 27 26 48 48 H 1.09007 * 113.64753 * 139.34632 * 28 27 26 49 49 H 1.09001 * 113.66146 * 265.09180 * 29 26 6 50 50 H 1.08994 * 113.66316 * 36.15286 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3309 2.0719 0.3736 5 6 2.6916 1.6785 -1.3291 6 6 3.9825 1.0673 -0.7547 7 1 4.0957 0.0044 -0.9675 8 7 5.1907 1.8437 -1.0636 9 6 5.9792 1.1930 -2.1185 10 6 7.2081 2.0161 -2.4072 11 8 7.4072 3.0439 -1.7950 12 7 8.0854 1.6106 -3.3467 13 6 9.2797 2.4110 -3.6278 14 6 10.4087 1.9582 -2.7383 15 1 10.2521 1.1548 -2.0337 16 6 11.6413 2.5703 -2.8232 17 7 11.8301 3.5529 -3.6767 18 14 13.0406 2.0094 -1.7201 19 1 12.5715 0.9008 -0.8504 20 1 14.1724 1.5372 -2.5576 21 1 13.4901 3.1446 -0.8749 22 6 7.8445 0.3694 -4.0867 23 6 8.4911 -0.8012 -3.3434 24 6 8.2496 -2.0483 -4.0872 25 7 8.0632 -3.0111 -4.6593 26 6 3.4025 1.3597 0.6297 27 6 3.8583 2.5756 1.4372 28 6 3.5430 1.7484 2.6968 29 6 3.7591 0.4904 1.8361 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.7562 2.7531 -1.4995 34 1 2.2980 1.1370 -2.1893 35 1 5.7473 1.9914 -0.2351 36 1 5.3768 1.1091 -3.0230 37 1 6.2781 0.1984 -1.7874 38 1 9.0657 3.4625 -3.4364 39 1 9.5656 2.2826 -4.6718 40 1 11.1034 3.8443 -4.2493 41 1 6.7712 0.1985 -4.1701 42 1 8.2780 0.4508 -5.0835 43 1 9.5644 -0.6303 -3.2600 44 1 8.0577 -0.8825 -2.3466 45 1 4.9169 2.8070 1.3196 46 1 3.2163 3.4478 1.3147 47 1 2.5183 1.8646 3.0495 48 1 4.2797 1.8645 3.4919 49 1 3.0378 -0.3030 2.0320 50 1 4.7898 0.1359 1.8304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459758285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:54 Heat of formation + Delta-G solvation = -3.262915 kcal Electronic energy + Delta-G solvation = -29512.854807 eV Core-core repulsion = 25542.092677 eV Total energy + Delta-G solvation = -3970.762130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03366 -39.31524 -37.34736 -36.83511 -35.61898 -35.15439 -33.27593 -32.76122 -30.76356 -28.11052 -27.01964 -25.98151 -25.78532 -24.69596 -23.90688 -23.36115 -22.40057 -20.94190 -18.89075 -18.33055 -17.75235 -17.19750 -16.66486 -16.40105 -16.17228 -15.89646 -15.59027 -15.31156 -15.06333 -14.59491 -14.49449 -14.12838 -13.96871 -13.74686 -13.44278 -13.10578 -12.96028 -12.80020 -12.55903 -12.42703 -12.35680 -12.16859 -12.03819 -11.98796 -11.85611 -11.67848 -11.54899 -11.34707 -11.18336 -11.06291 -10.75648 -10.57844 -10.51662 -10.33997 -10.18234 -10.16441 -9.59299 -9.22437 -9.06266 -8.43178 -8.37932 -7.80300 -6.43228 -4.16856 2.78221 2.88583 3.25237 3.27241 3.40316 3.44682 3.51098 3.56955 4.09376 4.22837 4.29292 4.38195 4.48859 4.58226 4.63387 4.67469 4.75653 4.90885 4.95281 5.04439 5.08127 5.11879 5.19564 5.24557 5.30854 5.32253 5.33126 5.39042 5.46021 5.53501 5.57717 5.65575 5.72155 5.80407 5.86055 5.87049 5.87796 5.98757 6.13080 6.20259 6.32259 6.67897 6.91312 7.00576 7.10424 7.28388 7.39277 7.63771 7.96085 8.14583 8.35820 8.71888 8.91433 9.53331 10.94100 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002958 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.504505 B = 9462.048091 C =10627.587747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.087 3.913 4 H 0.075 0.925 5 C -0.142 4.142 6 C 0.079 3.921 7 H 0.076 0.924 8 N -0.657 5.657 9 C 0.038 3.962 10 C 0.508 3.492 11 O -0.520 6.520 12 N -0.596 5.596 13 C 0.235 3.765 14 C -0.608 4.608 15 H 0.055 0.945 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 1.073 2.927 19 H -0.289 1.289 20 H -0.287 1.287 21 H -0.286 1.286 22 C 0.124 3.876 23 C -0.053 4.053 24 C 0.218 3.782 25 N -0.451 5.451 26 C -0.103 4.103 27 C -0.104 4.104 28 C -0.142 4.142 29 C -0.125 4.125 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.023 0.977 40 H 0.269 0.731 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.951 -6.111 7.975 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.028 3.972 4 H 0.093 0.907 5 C -0.181 4.181 6 C -0.031 4.031 7 H 0.094 0.906 8 N -0.291 5.291 9 C -0.094 4.094 10 C 0.294 3.706 11 O -0.394 6.394 12 N -0.329 5.329 13 C 0.115 3.885 14 C -0.646 4.646 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.544 5.544 18 Si 0.902 3.098 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.002 4.002 23 C -0.094 4.094 24 C -0.099 4.099 25 N -0.128 5.128 26 C -0.103 4.103 27 C -0.141 4.141 28 C -0.180 4.180 29 C -0.162 4.162 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.716 -6.424 7.393 22.015 hybrid contribution -1.281 -0.633 0.210 1.444 sum -20.998 -7.056 7.603 23.420 Atomic orbital electron populations 1.22795 0.81014 1.02697 0.99984 1.87864 1.19493 1.26496 1.94566 1.22681 0.92922 0.84899 0.96706 0.90707 1.23575 0.95572 1.02271 0.96684 1.22766 0.89957 0.95716 0.94702 0.90612 1.60306 1.08045 1.47864 1.12876 1.21979 0.94227 0.95751 0.97466 1.20268 0.83766 0.86364 0.80234 1.90688 1.75681 1.24677 1.48399 1.48025 1.24507 1.22689 1.37643 1.19406 0.81259 0.91741 0.96048 1.22278 0.96892 1.21992 1.23488 0.92691 1.25756 0.99958 0.94274 0.98347 1.70736 1.36114 1.25998 1.21597 0.83481 0.75128 0.75745 0.75491 1.21518 1.21362 1.21256 1.21248 0.99631 0.83358 0.95980 1.19980 1.06722 0.84908 0.97781 1.29236 0.92632 0.94523 0.93554 1.81160 1.09762 1.11955 1.09954 1.22949 0.95152 0.99023 0.93226 1.22537 1.02388 0.95346 0.93870 1.22867 1.01511 0.96736 0.96876 1.22655 1.01736 0.96853 0.94975 0.93965 0.89639 0.94072 0.88338 0.91215 0.82704 0.88722 0.92825 0.94635 0.95923 0.92031 0.90832 0.89611 0.85128 0.87883 0.88651 0.91170 0.90601 0.91317 0.90872 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.86 101.05 1.10 1.31 16 2 O -0.37 -3.58 10.21 -35.23 -0.36 -3.94 16 3 C 0.09 0.80 4.14 -26.28 -0.11 0.69 16 4 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 5 C -0.14 -1.44 7.72 -25.75 -0.20 -1.63 16 6 C 0.08 0.86 3.94 -67.26 -0.27 0.59 16 7 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 8 N -0.66 -8.61 5.90 -107.52 -0.63 -9.24 16 9 C 0.04 0.51 4.58 -4.98 -0.02 0.49 16 10 C 0.51 9.31 7.71 -10.98 -0.08 9.23 16 11 O -0.52 -11.96 15.78 5.56 0.09 -11.87 16 12 N -0.60 -10.87 2.46 -175.06 -0.43 -11.30 16 13 C 0.23 5.49 4.52 -5.20 -0.02 5.47 16 14 C -0.61 -15.63 8.92 -34.44 -0.31 -15.94 16 15 H 0.05 1.39 7.42 -52.49 -0.39 1.00 16 16 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 17 N -0.91 -26.41 13.65 55.43 0.76 -25.66 16 18 Si 1.07 24.32 29.90 -169.99 -5.08 19.23 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.12 1.67 5.21 -4.04 -0.02 1.65 16 23 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 24 C 0.22 2.93 15.43 -20.78 -0.32 2.61 16 25 N -0.45 -7.07 18.53 42.13 0.78 -6.29 16 26 C -0.10 -1.00 0.92 -154.71 -0.14 -1.14 16 27 C -0.10 -0.99 7.38 -26.28 -0.19 -1.19 16 28 C -0.14 -1.21 8.08 -25.75 -0.21 -1.42 16 29 C -0.12 -1.17 7.71 -26.28 -0.20 -1.37 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.35 4.89 6.74 -39.29 -0.26 4.63 16 36 H 0.09 1.12 7.40 -51.93 -0.38 0.74 16 37 H 0.05 0.62 7.17 -51.93 -0.37 0.25 16 38 H 0.04 0.95 7.28 -51.93 -0.38 0.58 16 39 H 0.02 0.53 7.76 -51.93 -0.40 0.13 16 40 H 0.27 7.76 7.22 -40.82 -0.29 7.47 16 41 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 42 H 0.09 1.14 7.89 -51.92 -0.41 0.73 16 43 H 0.13 1.90 7.26 -51.93 -0.38 1.52 16 44 H 0.10 1.15 7.22 -51.93 -0.38 0.77 16 45 H 0.10 1.02 6.76 -51.93 -0.35 0.67 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.70 7.83 -51.93 -0.41 0.30 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 409.86 15.07 6.18 6.18 Total: -1.00 -32.29 409.86 -8.14 -40.44 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.16 Total: 3.45 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.28 Total: -1.00 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.47 Total: -52.49 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.27 Total: -15.81 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.29 -8.14 -40.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.175 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds