Wall clock time and date at job start Tue Mar 31 2020 18:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99509 * 2 1 4 4 H 1.09006 * 112.89013 * 21.83813 * 3 2 1 5 5 C 1.53954 * 113.66403 * 250.49041 * 3 2 1 6 6 C 1.53948 * 87.29642 * 270.17485 * 5 3 2 7 7 H 1.08994 * 113.66779 * 89.82727 * 6 5 3 8 8 N 1.46901 * 113.66003 * 220.79384 * 6 5 3 9 9 C 1.46893 * 111.00145 * 255.49369 * 8 6 5 10 10 C 1.50702 * 109.47331 * 180.02562 * 9 8 6 11 11 O 1.21274 * 119.99922 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99922 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99914 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46944 * 89.99757 * 13 12 10 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47364 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.46883 * 120.00040 * 18 16 14 21 21 H 1.48497 * 109.46870 * 239.99850 * 18 16 14 22 22 C 1.46499 * 119.99751 * 359.97438 * 12 10 9 23 23 C 1.52996 * 109.47296 * 270.00006 * 22 12 10 24 24 C 1.47203 * 109.47160 * 180.02562 * 23 22 12 25 25 N 8.64803 * 140.09703 * 237.12681 * 2 1 3 26 26 C 1.52916 * 86.78251 * 335.26137 * 6 5 3 27 27 C 1.52907 * 121.13869 * 259.18774 * 26 6 5 28 28 C 1.53955 * 86.77774 * 209.37916 * 27 26 6 29 29 C 1.52911 * 121.13477 * 150.61755 * 26 6 5 30 30 H 1.09000 * 109.46953 * 60.00660 * 1 2 3 31 31 H 1.09004 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47695 * 299.99979 * 1 2 3 33 33 H 1.08994 * 113.58079 * 155.56680 * 5 3 2 34 34 H 1.09000 * 113.64641 * 24.78725 * 5 3 2 35 35 H 1.00904 * 111.00051 * 131.54040 * 8 6 5 36 36 H 1.08998 * 109.47467 * 59.99567 * 9 8 6 37 37 H 1.09005 * 109.46799 * 299.99891 * 9 8 6 38 38 H 1.09000 * 109.46609 * 329.99939 * 13 12 10 39 39 H 1.08999 * 109.46486 * 210.00018 * 13 12 10 40 40 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 41 41 H 1.09003 * 109.47206 * 30.00889 * 22 12 10 42 42 H 1.09008 * 109.46526 * 150.00269 * 22 12 10 43 43 H 1.08995 * 109.47390 * 300.00428 * 23 22 12 44 44 H 1.09001 * 109.46971 * 60.00239 * 23 22 12 45 45 H 1.09003 * 113.66046 * 323.84361 * 27 26 6 46 46 H 1.08994 * 113.66776 * 94.90800 * 27 26 6 47 47 H 1.08993 * 113.57783 * 270.12433 * 28 27 26 48 48 H 1.09007 * 113.64753 * 139.34632 * 28 27 26 49 49 H 1.09001 * 113.66146 * 265.09180 * 29 26 6 50 50 H 1.08994 * 113.66316 * 36.15286 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3309 2.0719 0.3736 5 6 2.6916 1.6785 -1.3291 6 6 3.9825 1.0673 -0.7547 7 1 4.0957 0.0044 -0.9675 8 7 5.1907 1.8437 -1.0636 9 6 5.9792 1.1930 -2.1185 10 6 7.2081 2.0161 -2.4072 11 8 7.4072 3.0439 -1.7950 12 7 8.0854 1.6106 -3.3467 13 6 9.2797 2.4110 -3.6278 14 6 10.4087 1.9582 -2.7383 15 1 10.2521 1.1548 -2.0337 16 6 11.6413 2.5703 -2.8232 17 7 11.8301 3.5529 -3.6767 18 14 13.0406 2.0094 -1.7201 19 1 12.5715 0.9008 -0.8504 20 1 14.1724 1.5372 -2.5576 21 1 13.4901 3.1446 -0.8749 22 6 7.8445 0.3694 -4.0867 23 6 8.4911 -0.8012 -3.3434 24 6 8.2496 -2.0483 -4.0872 25 7 8.0632 -3.0111 -4.6593 26 6 3.4025 1.3597 0.6297 27 6 3.8583 2.5756 1.4372 28 6 3.5430 1.7484 2.6968 29 6 3.7591 0.4904 1.8361 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.7562 2.7531 -1.4995 34 1 2.2980 1.1370 -2.1893 35 1 5.7473 1.9914 -0.2351 36 1 5.3768 1.1091 -3.0230 37 1 6.2781 0.1984 -1.7874 38 1 9.0657 3.4625 -3.4364 39 1 9.5656 2.2826 -4.6718 40 1 11.1034 3.8443 -4.2493 41 1 6.7712 0.1985 -4.1701 42 1 8.2780 0.4508 -5.0835 43 1 9.5644 -0.6303 -3.2600 44 1 8.0577 -0.8825 -2.3466 45 1 4.9169 2.8070 1.3196 46 1 3.2163 3.4478 1.3147 47 1 2.5183 1.8646 3.0495 48 1 4.2797 1.8645 3.4919 49 1 3.0378 -0.3030 2.0320 50 1 4.7898 0.1359 1.8304 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459758285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:53 Heat of formation + Delta-G solvation = -23.702934 kcal Electronic energy + Delta-G solvation = -29513.741153 eV Core-core repulsion = 25542.092677 eV Total energy + Delta-G solvation = -3971.648476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81067 -40.74832 -38.08396 -37.98670 -36.88334 -36.29493 -35.06459 -33.80108 -32.10688 -29.59108 -27.79773 -27.16744 -26.58903 -25.48104 -25.18274 -24.73982 -23.68419 -21.69834 -20.23543 -19.25276 -19.17888 -18.43989 -17.98200 -17.44312 -17.21024 -16.79977 -16.62994 -16.29432 -15.89316 -15.70011 -15.63467 -15.48863 -15.12592 -15.07122 -14.64029 -14.48104 -14.13275 -13.73300 -13.63839 -13.59005 -13.41879 -13.30854 -13.21639 -12.96210 -12.87761 -12.72486 -12.69253 -12.67504 -12.46431 -12.26314 -11.93471 -11.89516 -11.84213 -11.25960 -11.09207 -11.07236 -10.93543 -10.54517 -10.52176 -10.28593 -9.50445 -9.33285 -8.56697 -6.32168 1.56447 1.62602 1.65270 1.79206 1.79620 1.89613 2.16087 2.60439 2.61240 3.02583 3.22034 3.28028 3.48832 3.58940 3.74227 3.84717 3.87511 3.92540 3.99624 4.02681 4.10465 4.28855 4.30993 4.42798 4.49706 4.55963 4.56430 4.59826 4.61095 4.77840 4.81979 4.84242 4.87773 4.90093 4.97013 5.04565 5.07569 5.09975 5.11385 5.12416 5.22198 5.46539 5.58908 5.60396 5.93379 6.05155 6.28726 6.31173 6.35831 6.54763 6.58186 6.71070 7.38880 7.51181 8.78886 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002958 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.504505 B = 9462.048091 C =10627.587747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.094 3.906 4 H 0.087 0.913 5 C -0.141 4.141 6 C 0.077 3.923 7 H 0.078 0.922 8 N -0.669 5.669 9 C 0.051 3.949 10 C 0.502 3.498 11 O -0.575 6.575 12 N -0.597 5.597 13 C 0.246 3.754 14 C -0.602 4.602 15 H 0.061 0.939 16 C -0.032 4.032 17 N -0.940 5.940 18 Si 1.115 2.885 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.291 1.291 22 C 0.119 3.881 23 C -0.041 4.041 24 C 0.246 3.754 25 N -0.485 5.485 26 C -0.103 4.103 27 C -0.107 4.107 28 C -0.134 4.134 29 C -0.124 4.124 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.344 0.656 36 H 0.117 0.883 37 H 0.081 0.919 38 H -0.008 1.008 39 H 0.020 0.980 40 H 0.256 0.744 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.620 -8.158 8.930 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.302 6.302 3 C 0.035 3.965 4 H 0.105 0.895 5 C -0.179 4.179 6 C -0.032 4.032 7 H 0.096 0.904 8 N -0.302 5.302 9 C -0.081 4.081 10 C 0.291 3.709 11 O -0.454 6.454 12 N -0.328 5.328 13 C 0.124 3.876 14 C -0.641 4.641 15 H 0.079 0.921 16 C -0.231 4.231 17 N -0.578 5.578 18 Si 0.938 3.062 19 H -0.190 1.190 20 H -0.205 1.205 21 H -0.217 1.217 22 C -0.005 4.005 23 C -0.082 4.082 24 C -0.071 4.071 25 N -0.163 5.163 26 C -0.103 4.103 27 C -0.144 4.144 28 C -0.171 4.171 29 C -0.161 4.161 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.165 0.835 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.011 0.989 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.144 0.856 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.433 -8.527 8.326 24.524 hybrid contribution -0.844 0.019 -0.110 0.851 sum -22.277 -8.508 8.216 25.222 Atomic orbital electron populations 1.22975 0.79520 1.03740 1.00803 1.87836 1.21183 1.26602 1.94606 1.22604 0.92832 0.85243 0.95825 0.89511 1.23536 0.95253 1.01775 0.97349 1.22831 0.89128 0.95485 0.95782 0.90444 1.60326 1.08518 1.48804 1.12599 1.21944 0.91936 0.95531 0.98663 1.21209 0.84701 0.85994 0.78979 1.90664 1.77075 1.27282 1.50379 1.47946 1.22908 1.23739 1.38201 1.18928 0.82916 0.90327 0.95403 1.22597 0.97219 1.21240 1.23033 0.92074 1.27125 1.03051 0.93956 0.98933 1.70857 1.35858 1.27910 1.23208 0.82947 0.72971 0.75932 0.74340 1.18983 1.20456 1.21706 1.21530 1.02196 0.81385 0.95434 1.19848 1.05729 0.83995 0.98637 1.29105 0.91508 0.93979 0.92534 1.81207 1.10958 1.13079 1.11084 1.22968 0.95530 0.99046 0.92790 1.22501 1.01508 0.95670 0.94751 1.22843 1.02221 0.95685 0.96391 1.22629 1.01417 0.97030 0.95044 0.93338 0.88570 0.93059 0.89070 0.90897 0.83498 0.86473 0.90090 0.98948 0.96179 0.93405 0.87000 0.89505 0.86777 0.85594 0.90209 0.90868 0.89495 0.91052 0.90971 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.86 113.37 1.23 1.51 16 2 O -0.38 -6.61 10.21 -148.98 -1.52 -8.13 16 3 C 0.09 1.54 4.14 30.89 0.13 1.67 16 4 H 0.09 1.21 7.90 -2.38 -0.02 1.20 16 5 C -0.14 -2.57 7.72 31.23 0.24 -2.33 16 6 C 0.08 1.54 3.94 45.21 0.18 1.72 16 7 H 0.08 1.54 7.90 -2.39 -0.02 1.52 16 8 N -0.67 -16.68 5.90 -494.08 -2.92 -19.59 16 9 C 0.05 1.24 4.58 85.56 0.39 1.63 16 10 C 0.50 18.10 7.71 87.66 0.68 18.77 16 11 O -0.58 -27.12 15.78 -3.01 -0.05 -27.16 16 12 N -0.60 -21.31 2.46 -826.15 -2.03 -23.34 16 13 C 0.25 11.78 4.52 85.63 0.39 12.16 16 14 C -0.60 -31.16 8.92 25.60 0.23 -30.93 16 15 H 0.06 3.03 7.42 -2.91 -0.02 3.01 16 16 C -0.03 -1.78 5.46 84.66 0.46 -1.31 16 17 N -0.94 -56.17 13.65 21.45 0.29 -55.87 16 18 Si 1.12 48.63 29.90 68.60 2.05 50.68 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 22 C 0.12 2.92 5.21 86.38 0.45 3.37 16 23 C -0.04 -0.92 6.03 28.79 0.17 -0.74 16 24 C 0.25 5.96 15.43 89.45 1.38 7.34 16 25 N -0.49 -14.20 18.53 20.00 0.37 -13.83 16 26 C -0.10 -1.84 0.92 -52.31 -0.05 -1.88 16 27 C -0.11 -1.94 7.38 30.89 0.23 -1.71 16 28 C -0.13 -2.06 8.08 31.23 0.25 -1.81 16 29 C -0.12 -2.12 7.71 30.89 0.24 -1.88 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.34 9.44 6.74 -89.69 -0.60 8.84 16 36 H 0.12 2.34 7.40 -2.39 -0.02 2.33 16 37 H 0.08 1.55 7.17 -2.38 -0.02 1.54 16 38 H -0.01 -0.43 7.28 -2.39 -0.02 -0.44 16 39 H 0.02 0.97 7.76 -2.39 -0.02 0.96 16 40 H 0.26 15.46 7.22 -92.71 -0.67 14.79 16 41 H 0.11 1.94 6.44 -2.39 -0.02 1.93 16 42 H 0.09 2.15 7.89 -2.38 -0.02 2.13 16 43 H 0.11 3.09 7.26 -2.39 -0.02 3.07 16 44 H 0.13 2.31 7.22 -2.39 -0.02 2.30 16 45 H 0.08 1.71 6.76 -2.39 -0.02 1.70 16 46 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.07 1.25 7.83 -2.39 -0.02 1.24 16 50 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.14 409.86 3.24 -68.90 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.44 Total: 22.77 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.60 Total: 5.57 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.28 Total: -112.63 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.57 Total: -35.30 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.05 Total: 50.68 kcal Total: -72.14 3.24 -68.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459758285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.200 kcal (2) G-P(sol) polarization free energy of solvation -72.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds