Wall clock time and date at job start Tue Mar 31 2020 18:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99636 * 2 1 4 4 C 1.52995 * 109.47246 * 270.00143 * 3 2 1 5 5 C 1.47202 * 109.47060 * 180.02562 * 4 3 2 6 6 N 4.80467 * 118.48191 * 340.02995 * 2 1 3 7 7 C 1.34771 * 120.00330 * 180.02562 * 2 1 3 8 8 O 1.21285 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00048 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47150 * 59.99615 * 9 7 2 11 11 C 1.52995 * 109.47166 * 179.97438 * 9 7 2 12 12 C 1.53000 * 109.47137 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47355 * 300.00155 * 12 11 9 14 14 H 1.09002 * 109.46926 * 299.99636 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 16 16 O 1.21283 * 120.00363 * 359.97438 * 15 13 12 17 17 N 1.34784 * 119.99988 * 179.97438 * 15 13 12 18 18 C 1.46494 * 119.99635 * 0.02562 * 17 15 13 19 19 C 1.46493 * 119.99864 * 179.72721 * 17 15 13 20 20 C 1.50702 * 109.47427 * 89.99800 * 19 17 15 21 21 H 1.07999 * 119.99972 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99945 * 179.97438 * 20 19 17 23 23 N 1.31519 * 120.00264 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99887 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46706 * 120.00063 * 24 22 20 27 27 H 1.48497 * 109.47206 * 240.00218 * 24 22 20 28 28 C 1.53000 * 109.47124 * 59.99497 * 13 12 11 29 29 C 1.53000 * 109.47415 * 300.00466 * 28 13 12 30 30 H 1.08996 * 109.47280 * 269.99473 * 1 2 3 31 31 H 1.08999 * 109.47583 * 29.99822 * 1 2 3 32 32 H 1.09001 * 109.46637 * 149.99548 * 1 2 3 33 33 H 1.08993 * 109.47039 * 30.00457 * 3 2 1 34 34 H 1.08999 * 109.47050 * 150.00203 * 3 2 1 35 35 H 1.08993 * 109.47358 * 300.00119 * 4 3 2 36 36 H 1.08999 * 109.47047 * 60.00058 * 4 3 2 37 37 H 1.09002 * 109.47384 * 59.99779 * 11 9 7 38 38 H 1.08995 * 109.47132 * 299.99723 * 11 9 7 39 39 H 1.09000 * 109.46966 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.46807 * 59.99864 * 12 11 9 41 41 H 1.08995 * 109.47693 * 90.00207 * 18 17 15 42 42 H 1.09003 * 109.47006 * 210.00121 * 18 17 15 43 43 H 1.09004 * 109.47665 * 329.99813 * 18 17 15 44 44 H 1.09002 * 109.47192 * 209.99937 * 19 17 15 45 45 H 1.08996 * 109.47342 * 329.99648 * 19 17 15 46 46 H 0.96991 * 120.00123 * 179.97438 * 23 22 20 47 47 H 1.09007 * 109.46721 * 60.00490 * 28 13 12 48 48 H 1.08995 * 109.47131 * 180.02562 * 28 13 12 49 49 H 1.09002 * 109.46807 * 299.99967 * 29 28 13 50 50 H 1.09000 * 109.46966 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 6 3.1889 2.9851 -1.4424 6 7 3.7563 3.9692 -1.4423 7 6 2.1389 -1.1671 -0.0005 8 8 3.3518 -1.1671 -0.0010 9 6 1.3855 -2.4723 -0.0017 10 1 0.7591 -2.5295 -0.8919 11 6 2.3798 -3.6351 -0.0027 12 6 1.6149 -4.9602 -0.0033 13 6 0.7356 -5.0421 1.2462 14 1 1.3626 -4.9849 2.1360 15 6 -0.0182 -6.3469 1.2453 16 8 0.1325 -7.1338 0.3347 17 7 -0.8600 -6.6396 2.2565 18 6 -1.0424 -5.6889 3.3560 19 6 -1.5973 -7.9054 2.2526 20 6 -0.7857 -8.9618 2.9572 21 1 0.1823 -8.7148 3.3673 22 6 -1.2796 -10.2433 3.0792 23 7 -2.4587 -10.5439 2.5802 24 14 -0.2738 -11.5525 3.9533 25 1 1.0066 -10.9632 4.4206 26 1 -1.0366 -12.0661 5.1194 27 1 0.0077 -12.6688 3.0153 28 6 -0.2586 -3.8792 1.2473 29 6 0.5063 -2.5541 1.2478 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1385 0.5138 35 1 3.0415 0.9510 -1.9563 36 1 1.5000 1.8408 -1.9562 37 1 3.0065 -3.5781 0.8873 38 1 3.0064 -3.5766 -0.8926 39 1 2.3233 -5.7886 -0.0045 40 1 0.9879 -5.0174 -0.8931 41 1 -1.8587 -5.0078 3.1159 42 1 -1.2799 -6.2324 4.2706 43 1 -0.1243 -5.1192 3.5000 44 1 -2.5484 -7.7735 2.7686 45 1 -1.7820 -8.2152 1.2240 46 1 -2.8059 -11.4455 2.6657 47 1 -0.8856 -3.9364 0.3574 48 1 -0.8847 -3.9372 2.1376 49 1 1.1333 -2.4969 2.1376 50 1 -0.2021 -1.7257 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000480543677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:42 Heat of formation + Delta-G solvation = -51.043705 kcal Electronic energy + Delta-G solvation = -29205.331496 eV Core-core repulsion = 25232.497436 eV Total energy + Delta-G solvation = -3972.834061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91227 -39.50302 -37.55799 -36.93479 -36.12816 -34.89200 -32.90471 -32.53696 -31.03262 -30.64308 -27.78901 -27.39301 -26.16297 -25.37397 -23.75543 -22.65977 -22.24490 -20.26009 -19.47485 -18.45365 -18.23418 -17.38962 -16.59352 -16.52871 -16.26270 -15.79348 -15.54513 -15.39606 -15.01895 -14.53041 -14.30059 -14.12340 -14.01576 -13.81959 -13.62152 -13.22767 -13.10832 -13.07961 -12.72680 -12.67790 -12.43373 -12.33346 -12.21015 -12.07325 -12.01925 -11.74630 -11.55436 -11.42627 -11.26988 -11.17781 -10.99952 -10.84833 -10.58777 -10.46935 -10.17745 -10.08921 -9.92838 -9.60417 -9.23263 -8.77666 -8.44399 -7.63157 -6.05044 -4.09582 2.11265 2.31078 2.32424 2.55591 3.29210 3.36651 3.39819 3.46112 3.57811 3.93596 4.10444 4.39574 4.40946 4.45279 4.49585 4.56407 4.60796 4.77492 4.88291 4.96270 5.07755 5.12080 5.16364 5.18411 5.21970 5.29627 5.32628 5.34165 5.42067 5.45168 5.59633 5.76827 5.81699 5.86229 5.86422 5.93103 6.00500 6.07352 6.14537 6.23926 6.38872 6.49350 6.86615 7.05972 7.07892 7.44008 7.54970 7.79417 7.91852 8.23326 8.43669 8.90696 9.12050 9.55832 11.02982 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.002004 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.518166 B =13968.531646 C =14268.535398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.620 5.620 3 C 0.120 3.880 4 C -0.043 4.043 5 C 0.210 3.790 6 N -0.433 5.433 7 C 0.521 3.479 8 O -0.532 6.532 9 C -0.106 4.106 10 H 0.100 0.900 11 C -0.097 4.097 12 C -0.097 4.097 13 C -0.108 4.108 14 H 0.090 0.910 15 C 0.507 3.493 16 O -0.542 6.542 17 N -0.602 5.602 18 C 0.083 3.917 19 C 0.245 3.755 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 C -0.120 4.120 29 C -0.118 4.118 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.031 0.969 45 H 0.043 0.957 46 H 0.262 0.738 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 24.638 -4.147 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.354 5.354 3 C -0.005 4.005 4 C -0.085 4.085 5 C -0.109 4.109 6 N -0.110 5.110 7 C 0.310 3.690 8 O -0.407 6.407 9 C -0.127 4.127 10 H 0.118 0.882 11 C -0.135 4.135 12 C -0.135 4.135 13 C -0.129 4.129 14 H 0.108 0.892 15 C 0.294 3.706 16 O -0.419 6.419 17 N -0.334 5.334 18 C -0.061 4.061 19 C 0.125 3.875 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.158 4.158 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.803 25.514 -4.629 26.208 hybrid contribution 0.116 -1.151 0.567 1.288 sum 3.919 24.363 -4.062 25.008 Atomic orbital electron populations 1.22083 0.78875 1.03711 1.02469 1.47845 1.07259 1.05437 1.74852 1.21277 0.99293 0.85622 0.94282 1.19682 1.00096 0.88067 1.00633 1.28950 0.93764 0.94473 0.93682 1.81269 1.09660 1.12149 1.07924 1.20983 0.87993 0.85306 0.74748 1.90716 1.14047 1.87287 1.48640 1.21413 0.98286 0.91928 1.01038 0.88201 1.21387 0.96584 0.92224 1.03331 1.21333 0.98448 0.96605 0.97142 1.21345 0.97444 0.93585 1.00569 0.89159 1.20335 0.80210 0.87606 0.82475 1.90662 1.64353 1.50620 1.36275 1.48134 1.43610 1.20718 1.20967 1.21761 0.99996 0.92930 0.91460 1.19275 0.90928 0.78516 0.98758 1.21480 1.04005 0.94709 1.36195 0.92446 1.24940 0.95108 0.98373 0.95737 1.69939 1.17546 1.20348 1.45588 0.86452 0.80189 0.81627 0.79209 1.19813 1.20990 1.20869 1.21783 0.97618 0.92459 1.03893 1.21807 0.98466 0.98658 0.96653 0.91653 0.90874 0.90015 0.89475 0.88838 0.86885 0.87146 0.91234 0.91111 0.90762 0.91194 0.93555 0.91034 0.92229 0.95112 0.93897 0.92797 0.91271 0.89746 0.91253 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 8.80 59.85 0.53 0.69 16 2 N -0.62 -3.09 2.87 -181.57 -0.52 -3.61 16 3 C 0.12 0.51 5.36 -4.04 -0.02 0.49 16 4 C -0.04 -0.15 6.03 -29.52 -0.18 -0.33 16 5 C 0.21 1.43 15.43 -20.76 -0.32 1.11 16 6 N -0.43 -4.45 18.54 42.15 0.78 -3.67 16 7 C 0.52 4.31 7.07 -10.99 -0.08 4.23 16 8 O -0.53 -6.40 15.56 5.55 0.09 -6.31 16 9 C -0.11 -0.82 1.72 -91.77 -0.16 -0.98 16 10 H 0.10 0.65 7.40 -51.93 -0.38 0.27 16 11 C -0.10 -1.01 4.49 -26.73 -0.12 -1.13 16 12 C -0.10 -1.25 4.49 -26.73 -0.12 -1.37 16 13 C -0.11 -1.45 1.72 -91.77 -0.16 -1.61 16 14 H 0.09 1.15 7.40 -51.93 -0.38 0.76 16 15 C 0.51 9.99 7.07 -10.98 -0.08 9.91 16 16 O -0.54 -13.23 15.56 5.56 0.09 -13.15 16 17 N -0.60 -12.18 2.86 -182.96 -0.52 -12.70 16 18 C 0.08 1.20 8.80 59.84 0.53 1.73 16 19 C 0.24 6.27 5.16 -5.20 -0.03 6.24 16 20 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 24 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C -0.12 -1.16 4.84 -26.73 -0.13 -1.29 16 29 C -0.12 -0.82 4.84 -26.73 -0.13 -0.95 16 30 H 0.07 0.12 6.95 -51.93 -0.36 -0.24 16 31 H 0.07 0.03 8.07 -51.93 -0.42 -0.39 16 32 H 0.08 0.17 6.01 -51.93 -0.31 -0.14 16 33 H 0.09 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.09 0.59 7.42 -51.93 -0.39 0.20 16 35 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.05 0.56 6.95 -51.93 -0.36 0.19 16 42 H 0.07 1.10 8.07 -51.93 -0.42 0.69 16 43 H 0.06 0.71 6.01 -51.93 -0.31 0.40 16 44 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 45 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 48 H 0.08 0.78 4.53 -51.93 -0.24 0.55 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.36 4.53 -51.93 -0.24 0.12 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -37.24 398.23 -7.21 -44.44 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -7.95 Total: -5.37 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.88 Total: 3.26 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.47 Total: -45.63 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.24 -7.21 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000480543677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.599 kcal (2) G-P(sol) polarization free energy of solvation -37.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds