Wall clock time and date at job start Tue Mar 31 2020 18:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99636 * 2 1 4 4 C 1.52995 * 109.47246 * 270.00143 * 3 2 1 5 5 C 1.47202 * 109.47060 * 180.02562 * 4 3 2 6 6 N 4.80467 * 118.48191 * 340.02995 * 2 1 3 7 7 C 1.34771 * 120.00330 * 180.02562 * 2 1 3 8 8 O 1.21285 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00048 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47150 * 59.99615 * 9 7 2 11 11 C 1.52995 * 109.47166 * 179.97438 * 9 7 2 12 12 C 1.53000 * 109.47137 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47355 * 300.00155 * 12 11 9 14 14 H 1.09002 * 109.46926 * 299.99636 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 16 16 O 1.21283 * 120.00363 * 359.97438 * 15 13 12 17 17 N 1.34784 * 119.99988 * 179.97438 * 15 13 12 18 18 C 1.46494 * 119.99635 * 0.02562 * 17 15 13 19 19 C 1.46493 * 119.99864 * 179.72721 * 17 15 13 20 20 C 1.50702 * 109.47427 * 89.99800 * 19 17 15 21 21 H 1.07999 * 119.99972 * 0.02562 * 20 19 17 22 22 C 1.37875 * 119.99945 * 179.97438 * 20 19 17 23 23 N 1.31519 * 120.00264 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99887 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46706 * 120.00063 * 24 22 20 27 27 H 1.48497 * 109.47206 * 240.00218 * 24 22 20 28 28 C 1.53000 * 109.47124 * 59.99497 * 13 12 11 29 29 C 1.53000 * 109.47415 * 300.00466 * 28 13 12 30 30 H 1.08996 * 109.47280 * 269.99473 * 1 2 3 31 31 H 1.08999 * 109.47583 * 29.99822 * 1 2 3 32 32 H 1.09001 * 109.46637 * 149.99548 * 1 2 3 33 33 H 1.08993 * 109.47039 * 30.00457 * 3 2 1 34 34 H 1.08999 * 109.47050 * 150.00203 * 3 2 1 35 35 H 1.08993 * 109.47358 * 300.00119 * 4 3 2 36 36 H 1.08999 * 109.47047 * 60.00058 * 4 3 2 37 37 H 1.09002 * 109.47384 * 59.99779 * 11 9 7 38 38 H 1.08995 * 109.47132 * 299.99723 * 11 9 7 39 39 H 1.09000 * 109.46966 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.46807 * 59.99864 * 12 11 9 41 41 H 1.08995 * 109.47693 * 90.00207 * 18 17 15 42 42 H 1.09003 * 109.47006 * 210.00121 * 18 17 15 43 43 H 1.09004 * 109.47665 * 329.99813 * 18 17 15 44 44 H 1.09002 * 109.47192 * 209.99937 * 19 17 15 45 45 H 1.08996 * 109.47342 * 329.99648 * 19 17 15 46 46 H 0.96991 * 120.00123 * 179.97438 * 23 22 20 47 47 H 1.09007 * 109.46721 * 60.00490 * 28 13 12 48 48 H 1.08995 * 109.47131 * 180.02562 * 28 13 12 49 49 H 1.09002 * 109.46807 * 299.99967 * 29 28 13 50 50 H 1.09000 * 109.46966 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 6 3.1889 2.9851 -1.4424 6 7 3.7563 3.9692 -1.4423 7 6 2.1389 -1.1671 -0.0005 8 8 3.3518 -1.1671 -0.0010 9 6 1.3855 -2.4723 -0.0017 10 1 0.7591 -2.5295 -0.8919 11 6 2.3798 -3.6351 -0.0027 12 6 1.6149 -4.9602 -0.0033 13 6 0.7356 -5.0421 1.2462 14 1 1.3626 -4.9849 2.1360 15 6 -0.0182 -6.3469 1.2453 16 8 0.1325 -7.1338 0.3347 17 7 -0.8600 -6.6396 2.2565 18 6 -1.0424 -5.6889 3.3560 19 6 -1.5973 -7.9054 2.2526 20 6 -0.7857 -8.9618 2.9572 21 1 0.1823 -8.7148 3.3673 22 6 -1.2796 -10.2433 3.0792 23 7 -2.4587 -10.5439 2.5802 24 14 -0.2738 -11.5525 3.9533 25 1 1.0066 -10.9632 4.4206 26 1 -1.0366 -12.0661 5.1194 27 1 0.0077 -12.6688 3.0153 28 6 -0.2586 -3.8792 1.2473 29 6 0.5063 -2.5541 1.2478 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1385 0.5138 35 1 3.0415 0.9510 -1.9563 36 1 1.5000 1.8408 -1.9562 37 1 3.0065 -3.5781 0.8873 38 1 3.0064 -3.5766 -0.8926 39 1 2.3233 -5.7886 -0.0045 40 1 0.9879 -5.0174 -0.8931 41 1 -1.8587 -5.0078 3.1159 42 1 -1.2799 -6.2324 4.2706 43 1 -0.1243 -5.1192 3.5000 44 1 -2.5484 -7.7735 2.7686 45 1 -1.7820 -8.2152 1.2240 46 1 -2.8059 -11.4455 2.6657 47 1 -0.8856 -3.9364 0.3574 48 1 -0.8847 -3.9372 2.1376 49 1 1.1333 -2.4969 2.1376 50 1 -0.2021 -1.7257 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000480543677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:41 Heat of formation + Delta-G solvation = -75.778847 kcal Electronic energy + Delta-G solvation = -29206.404093 eV Core-core repulsion = 25232.497436 eV Total energy + Delta-G solvation = -3973.906657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64539 -40.73271 -38.32756 -37.78189 -36.67021 -36.58602 -34.75701 -33.32920 -31.99951 -31.38754 -29.57942 -27.66546 -27.45905 -26.33549 -25.08723 -23.51071 -23.43538 -21.15246 -20.03145 -19.87839 -18.68481 -18.65791 -17.91320 -17.68625 -17.24778 -16.99261 -16.50930 -16.29673 -15.95427 -15.82090 -15.31187 -15.01620 -14.78427 -14.65514 -14.54188 -14.20999 -13.99319 -13.85105 -13.66978 -13.56198 -13.47963 -13.41190 -13.26686 -13.05279 -12.84525 -12.77558 -12.73341 -12.62222 -12.48690 -12.32745 -12.20382 -12.12847 -11.89073 -11.84452 -11.66602 -11.32074 -10.94474 -10.67345 -10.63949 -10.29133 -9.62688 -9.34897 -8.21614 -6.36180 1.35976 1.38520 1.50037 1.58823 1.76955 1.80434 1.91934 2.10615 2.34475 2.51316 3.07573 3.15027 3.50955 3.70323 3.80602 3.86947 4.08569 4.14354 4.21945 4.23763 4.35073 4.42497 4.47272 4.53828 4.55125 4.60816 4.63946 4.73203 4.83187 4.85799 4.92006 4.96430 4.98256 5.05413 5.08577 5.12360 5.15571 5.24821 5.27177 5.28719 5.34444 5.45327 5.54360 5.59041 5.62336 5.88867 6.08748 6.42784 6.58181 6.72274 6.86609 7.25558 7.30286 7.56250 8.85068 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.002004 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.518166 B =13968.531646 C =14268.535398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.608 5.608 3 C 0.119 3.881 4 C -0.035 4.035 5 C 0.240 3.760 6 N -0.499 5.499 7 C 0.521 3.479 8 O -0.578 6.578 9 C -0.102 4.102 10 H 0.119 0.881 11 C -0.088 4.088 12 C -0.092 4.092 13 C -0.095 4.095 14 H 0.104 0.896 15 C 0.497 3.503 16 O -0.602 6.602 17 N -0.609 5.609 18 C 0.076 3.924 19 C 0.258 3.742 20 C -0.543 4.543 21 H 0.050 0.950 22 C 0.008 3.992 23 N -0.927 5.927 24 Si 0.965 3.035 25 H -0.269 1.269 26 H -0.268 1.268 27 H -0.282 1.282 28 C -0.113 4.113 29 C -0.108 4.108 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.025 0.975 45 H -0.003 1.003 46 H 0.267 0.733 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.070 0.930 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 26.946 -3.007 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.340 5.340 3 C -0.006 4.006 4 C -0.076 4.076 5 C -0.077 4.077 6 N -0.177 5.177 7 C 0.310 3.690 8 O -0.458 6.458 9 C -0.123 4.123 10 H 0.136 0.864 11 C -0.126 4.126 12 C -0.130 4.130 13 C -0.117 4.117 14 H 0.121 0.879 15 C 0.286 3.714 16 O -0.484 6.484 17 N -0.339 5.339 18 C -0.066 4.066 19 C 0.137 3.863 20 C -0.581 4.581 21 H 0.069 0.931 22 C -0.191 4.191 23 N -0.567 5.567 24 Si 0.790 3.210 25 H -0.193 1.193 26 H -0.193 1.193 27 H -0.208 1.208 28 C -0.151 4.151 29 C -0.145 4.145 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.165 0.835 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.043 0.957 45 H 0.015 0.985 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.115 0.885 49 H 0.088 0.912 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.780 27.888 -3.453 28.238 hybrid contribution 0.366 -1.889 0.176 1.932 sum 3.146 25.999 -3.277 26.393 Atomic orbital electron populations 1.22409 0.76574 1.05491 1.03832 1.47831 1.08559 1.04538 1.73099 1.21329 0.98788 0.85865 0.94597 1.19828 1.01186 0.86005 1.00579 1.29482 0.92339 0.94261 0.91667 1.81299 1.11835 1.14449 1.10149 1.20957 0.87350 0.86207 0.74478 1.90711 1.15993 1.87927 1.51121 1.21366 0.97732 0.90686 1.02540 0.86368 1.21233 0.96785 0.91894 1.02677 1.21251 0.97826 0.97206 0.96740 1.21359 0.97721 0.91401 1.01181 0.87858 1.21510 0.79580 0.89156 0.81154 1.90625 1.66187 1.53029 1.38530 1.48154 1.43102 1.19878 1.22813 1.22107 1.03083 0.92315 0.89077 1.18732 0.91209 0.80950 0.95440 1.21758 1.03949 0.95932 1.36480 0.93134 1.25833 0.96223 1.00655 0.96417 1.70046 1.19005 1.21101 1.46533 0.85402 0.78798 0.78475 0.78331 1.19322 1.19297 1.20839 1.21787 0.96862 0.91868 1.04570 1.21794 0.98671 0.98020 0.96028 0.90381 0.88177 0.89417 0.86781 0.91316 0.87324 0.83533 0.92035 0.91761 0.93718 0.92008 0.90038 0.92061 0.88879 0.95684 0.98521 0.92428 0.91197 0.88549 0.91163 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.06 8.80 127.77 1.12 1.07 16 2 N -0.61 -3.71 2.87 -846.77 -2.43 -6.15 16 3 C 0.12 0.64 5.36 86.38 0.46 1.10 16 4 C -0.03 -0.14 6.03 28.79 0.17 0.03 16 5 C 0.24 2.91 15.43 89.44 1.38 4.29 16 6 N -0.50 -10.08 18.54 20.01 0.37 -9.71 16 7 C 0.52 7.29 7.07 87.66 0.62 7.91 16 8 O -0.58 -13.37 15.56 -3.05 -0.05 -13.42 16 9 C -0.10 -1.31 1.72 -11.54 -0.02 -1.33 16 10 H 0.12 1.12 7.40 -2.39 -0.02 1.10 16 11 C -0.09 -1.75 4.49 30.59 0.14 -1.61 16 12 C -0.09 -2.39 4.49 30.59 0.14 -2.25 16 13 C -0.10 -2.46 1.72 -11.54 -0.02 -2.48 16 14 H 0.10 2.42 7.40 -2.39 -0.02 2.41 16 15 C 0.50 19.91 7.07 87.65 0.62 20.53 16 16 O -0.60 -31.05 15.56 -3.04 -0.05 -31.10 16 17 N -0.61 -24.74 2.86 -851.16 -2.43 -27.18 16 18 C 0.08 2.05 8.80 127.77 1.12 3.17 16 19 C 0.26 13.76 5.16 85.64 0.44 14.20 16 20 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.01 0.44 5.46 84.65 0.46 0.90 16 23 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 24 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 28 C -0.11 -1.81 4.84 30.59 0.15 -1.66 16 29 C -0.11 -1.05 4.84 30.60 0.15 -0.90 16 30 H 0.08 -0.20 6.95 -2.39 -0.02 -0.22 16 31 H 0.10 -0.55 8.07 -2.39 -0.02 -0.57 16 32 H 0.09 -0.12 6.01 -2.39 -0.01 -0.14 16 33 H 0.11 0.04 8.07 -2.39 -0.02 0.02 16 34 H 0.07 0.77 7.42 -2.39 -0.02 0.75 16 35 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 36 H 0.15 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 38 H 0.06 1.36 8.10 -2.39 -0.02 1.35 16 39 H 0.04 1.39 8.10 -2.39 -0.02 1.37 16 40 H 0.06 1.68 8.10 -2.39 -0.02 1.67 16 41 H 0.08 1.65 6.95 -2.39 -0.02 1.64 16 42 H 0.06 1.80 8.07 -2.39 -0.02 1.78 16 43 H 0.09 1.89 6.01 -2.38 -0.01 1.87 16 44 H 0.03 1.34 8.07 -2.39 -0.02 1.32 16 45 H 0.00 -0.21 7.42 -2.39 -0.02 -0.22 16 46 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.10 1.35 4.53 -2.39 -0.01 1.34 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.11 0.36 4.53 -2.39 -0.01 0.35 16 Total: -1.00 -88.60 398.23 5.85 -82.76 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 0.94 Total: 1.39 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 7.18 Total: 11.87 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -4.21 Total: -98.59 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.09 Total: -44.51 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -88.60 5.85 -82.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000480543677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.977 kcal (2) G-P(sol) polarization free energy of solvation -88.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds