Wall clock time and date at job start Tue Mar 31 2020 18:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 117.00071 * 2 1 4 4 C 1.38552 * 120.08325 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.01241 * 179.97438 * 4 3 2 6 6 C 1.38279 * 120.17901 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.91601 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47146 * 89.99460 * 7 6 5 9 9 C 1.46904 * 110.99588 * 169.99882 * 8 7 6 10 10 C 1.46893 * 111.00444 * 293.95482 * 8 7 6 11 11 C 1.38196 * 120.16570 * 359.76799 * 6 5 4 12 12 C 1.38723 * 119.98282 * 0.48861 * 11 6 5 13 13 N 1.40129 * 120.08839 * 179.76756 * 12 11 6 14 14 C 1.34777 * 119.99511 * 335.18984 * 13 12 11 15 15 O 1.21294 * 120.00658 * 354.47148 * 14 13 12 16 16 C 1.50701 * 119.99582 * 174.46898 * 14 13 12 17 17 H 1.09002 * 109.47338 * 40.00220 * 16 14 13 18 18 N 1.46899 * 109.47321 * 160.00463 * 16 14 13 19 19 C 1.53000 * 109.47420 * 280.00278 * 16 14 13 20 20 C 1.52993 * 109.47643 * 174.99991 * 19 16 14 21 21 C 1.50696 * 109.47492 * 179.97438 * 20 19 16 22 22 H 1.08000 * 119.99812 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31504 * 119.99963 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47534 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47316 * 120.00141 * 25 23 21 28 28 H 1.48505 * 109.47018 * 240.00090 * 25 23 21 29 29 H 1.09001 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46813 * 300.00059 * 1 2 3 31 31 H 1.09001 * 109.47347 * 59.99912 * 1 2 3 32 32 H 1.07995 * 119.99016 * 359.97392 * 4 3 2 33 33 H 1.08003 * 119.91001 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47343 * 210.00221 * 7 6 5 35 35 H 1.09007 * 109.46767 * 329.99792 * 7 6 5 36 36 H 1.09001 * 109.46967 * 60.00765 * 9 8 7 37 37 H 1.09005 * 109.47136 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.47207 * 300.00115 * 9 8 7 39 39 H 1.08999 * 109.47541 * 60.00087 * 10 8 7 40 40 H 1.09000 * 109.47533 * 180.02562 * 10 8 7 41 41 H 1.09002 * 109.47046 * 300.00333 * 10 8 7 42 42 H 1.07997 * 120.00451 * 180.25828 * 11 6 5 43 43 H 0.96993 * 119.99966 * 155.19155 * 13 12 11 44 44 H 1.00913 * 110.99235 * 296.04559 * 18 16 14 45 45 H 1.00899 * 110.99847 * 59.99366 * 18 16 14 46 46 H 1.09009 * 109.47270 * 295.00272 * 19 16 14 47 47 H 1.09001 * 109.47006 * 54.99555 * 19 16 14 48 48 H 1.09000 * 109.47074 * 299.99823 * 20 19 16 49 49 H 1.09001 * 109.47276 * 59.99729 * 20 19 16 50 50 H 0.97006 * 120.00270 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9226 3.6056 0.0011 6 6 3.3033 3.6805 0.0016 7 6 3.9830 5.0256 0.0028 8 7 4.2032 5.4617 1.3881 9 6 5.0693 6.6474 1.4353 10 6 2.9269 5.7146 2.0697 11 6 4.0615 2.5251 0.0064 12 6 3.4373 1.2863 0.0005 13 7 4.2039 0.1133 0.0005 14 6 5.4615 0.1303 -0.4841 15 8 5.8949 1.1331 -1.0112 16 6 6.3291 -1.0966 -0.3709 17 1 5.7293 -1.9853 -0.5677 18 7 7.4211 -1.0162 -1.3503 19 6 6.9147 -1.1789 1.0402 20 6 7.6934 -2.4868 1.1939 21 6 8.2707 -2.5675 2.5835 22 1 8.0990 -1.7661 3.2869 23 6 9.0173 -3.6648 2.9573 24 7 9.2259 -4.6408 2.1009 25 14 9.7323 -3.7651 4.6801 26 1 9.3554 -2.5487 5.4441 27 1 9.1975 -4.9671 5.3688 28 1 11.2120 -3.8594 4.5972 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 0.2149 2.3195 0.0005 33 1 1.3340 4.5112 0.0019 34 1 4.9414 4.9489 -0.5108 35 1 3.3527 5.7516 -0.5109 36 1 4.6006 7.4618 0.8829 37 1 5.2164 6.9489 2.4724 38 1 6.0337 6.4111 0.9857 39 1 2.3337 4.8002 2.0814 40 1 3.1190 6.0365 3.0932 41 1 2.3806 6.4952 1.5402 42 1 5.1397 2.5867 0.0111 43 1 3.8296 -0.7107 0.3492 44 1 7.0623 -1.0259 -2.2934 45 1 7.9921 -0.2001 -1.1890 46 1 7.5852 -0.3353 1.2051 47 1 6.1068 -1.1490 1.7712 48 1 7.0230 -3.3303 1.0291 49 1 8.5014 -2.5167 0.4629 50 1 9.7514 -5.4126 2.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519767340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:35 Heat of formation + Delta-G solvation = -44.494668 kcal Electronic energy + Delta-G solvation = -29113.853010 eV Core-core repulsion = 25141.302937 eV Total energy + Delta-G solvation = -3972.550073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.96125 -39.53777 -38.43483 -36.72324 -35.28310 -34.71310 -32.79261 -31.15638 -30.18389 -29.99308 -27.99707 -27.78292 -26.50914 -26.15774 -24.09055 -22.77899 -22.36819 -20.99745 -20.54783 -19.74872 -18.41403 -17.38069 -17.06095 -16.29721 -16.17289 -15.90722 -15.62880 -15.47521 -15.34271 -15.22174 -14.63910 -14.53163 -14.32098 -14.03365 -13.76715 -13.63406 -13.45256 -12.88239 -12.60584 -12.38702 -12.34901 -12.29377 -12.00793 -11.93120 -11.86447 -11.56384 -11.42671 -11.39874 -11.16839 -10.89209 -10.65263 -10.52006 -10.46099 -10.00796 -9.77738 -9.35292 -8.96493 -8.68101 -8.55623 -8.35825 -8.20838 -7.80030 -5.91796 -3.93651 1.14682 1.25890 2.68779 2.97280 3.19998 3.35986 3.43512 3.47897 3.52335 4.01058 4.51767 4.56510 4.59490 4.74786 4.83729 4.88384 4.89394 4.94651 5.03236 5.04998 5.11534 5.21812 5.22305 5.30395 5.34196 5.43874 5.48897 5.52021 5.57951 5.65159 5.69942 5.77640 5.81970 5.94885 6.08640 6.33906 6.44860 6.53281 6.66238 6.72399 6.78091 6.80113 7.09671 7.19914 7.35051 7.53925 7.77705 7.79676 7.98039 8.14719 8.20577 8.50697 9.14518 9.69537 11.19163 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.002780 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.611787 B =10067.973319 C =11179.963467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.318 6.318 3 C 0.094 3.906 4 C -0.189 4.189 5 C -0.099 4.099 6 C -0.095 4.095 7 C 0.100 3.900 8 N -0.542 5.542 9 C 0.024 3.976 10 C 0.021 3.979 11 C -0.074 4.074 12 C 0.129 3.871 13 N -0.661 5.661 14 C 0.483 3.517 15 O -0.535 6.535 16 C 0.081 3.919 17 H 0.100 0.900 18 N -0.805 5.805 19 C -0.096 4.096 20 C 0.031 3.969 21 C -0.521 4.521 22 H 0.053 0.947 23 C 0.057 3.943 24 N -0.893 5.893 25 Si 0.888 3.112 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.284 1.284 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.023 0.977 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.154 0.846 43 H 0.417 0.583 44 H 0.335 0.665 45 H 0.349 0.651 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.013 0.987 49 H 0.035 0.965 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.708 18.520 -5.850 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.232 6.232 3 C 0.046 3.954 4 C -0.208 4.208 5 C -0.119 4.119 6 C -0.097 4.097 7 C -0.027 4.027 8 N -0.265 5.265 9 C -0.124 4.124 10 C -0.127 4.127 11 C -0.095 4.095 12 C 0.033 3.967 13 N -0.305 5.305 14 C 0.271 3.729 15 O -0.412 6.412 16 C -0.035 4.035 17 H 0.118 0.882 18 N -0.333 5.333 19 C -0.134 4.134 20 C -0.006 4.006 21 C -0.560 4.560 22 H 0.071 0.929 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.716 3.284 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.172 0.828 43 H 0.253 0.747 44 H 0.147 0.853 45 H 0.163 0.837 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.054 0.946 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.640 17.740 -5.679 26.351 hybrid contribution -1.109 1.166 0.457 1.673 sum -19.749 18.906 -5.222 27.834 Atomic orbital electron populations 1.23030 0.78234 1.03975 1.01176 1.86025 1.21475 1.26478 1.89213 1.18704 0.90413 0.84970 1.01267 1.20922 0.99599 0.91681 1.08617 1.20726 0.93838 0.96773 1.00527 1.19458 0.92909 0.94534 1.02760 1.20985 1.00198 0.92498 0.89061 1.61949 1.15233 1.33860 1.15501 1.22398 0.97349 0.90541 1.02073 1.22465 0.90788 1.00727 0.98720 1.21160 1.01895 0.88894 0.97543 1.17231 0.86857 0.87756 1.04832 1.43666 1.14361 1.11164 1.61351 1.23037 0.81480 0.92524 0.75879 1.90600 1.72862 1.34704 1.43020 1.21871 0.91097 0.92873 0.97647 0.88170 1.59000 1.20696 1.48283 1.05304 1.21683 0.99558 1.02886 0.89276 1.19018 0.95334 0.89397 0.96828 1.21320 1.32103 1.04212 0.98327 0.92881 1.24988 0.96436 0.95872 0.97055 1.69982 1.40100 1.08591 1.34536 0.86598 0.78899 0.77870 0.84989 1.19817 1.21127 1.21063 0.88169 0.92696 0.92793 0.85295 0.86275 0.89679 0.94066 0.95797 0.91233 0.91096 0.90818 0.91496 0.95902 0.82829 0.74656 0.85341 0.83728 0.92670 0.92695 0.96826 0.94618 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.57 9.91 -19.66 -0.19 -3.76 16 3 C 0.09 1.15 6.70 -39.07 -0.26 0.89 16 4 C -0.19 -1.93 9.04 -39.46 -0.36 -2.28 16 5 C -0.10 -1.00 7.95 -39.57 -0.31 -1.32 16 6 C -0.10 -1.13 4.88 -104.62 -0.51 -1.64 16 7 C 0.10 1.04 5.11 -4.98 -0.03 1.01 16 8 N -0.54 -5.69 5.01 -252.72 -1.27 -6.96 16 9 C 0.02 0.21 9.57 60.07 0.57 0.78 16 10 C 0.02 0.19 9.13 60.06 0.55 0.74 16 11 C -0.07 -1.07 8.37 -39.42 -0.33 -1.40 16 12 C 0.13 1.84 6.45 -83.49 -0.54 1.30 16 13 N -0.66 -9.47 5.29 -9.74 -0.05 -9.52 16 14 C 0.48 7.74 6.87 -10.98 -0.08 7.67 16 15 O -0.54 -9.49 13.42 5.54 0.07 -9.42 16 16 C 0.08 1.36 3.15 -68.86 -0.22 1.14 16 17 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 18 N -0.81 -13.41 8.44 -5.65 -0.05 -13.46 16 19 C -0.10 -1.94 4.78 -26.73 -0.13 -2.07 16 20 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 21 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 22 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 24 N -0.89 -27.02 13.28 55.43 0.74 -26.28 16 25 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.33 7.66 -51.92 -0.40 -0.07 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 33 H 0.12 0.94 8.03 -52.48 -0.42 0.52 16 34 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 35 H 0.04 0.37 8.06 -51.93 -0.42 -0.05 16 36 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.07 0.69 6.16 -51.93 -0.32 0.37 16 40 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 41 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.15 2.52 5.79 -52.49 -0.30 2.22 16 43 H 0.42 5.35 8.34 -40.82 -0.34 5.01 16 44 H 0.33 4.84 9.06 -39.29 -0.36 4.48 16 45 H 0.35 5.83 8.58 -39.29 -0.34 5.50 16 46 H 0.05 1.16 8.14 -51.92 -0.42 0.73 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 406.29 15.07 6.12 6.12 Total: -1.00 -33.29 406.29 -9.04 -42.33 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.21 Total: 10.95 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.19 Total: -6.88 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.63 Total: -56.22 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.12 Total: -13.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.29 -9.04 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519767340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.160 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds