Wall clock time and date at job start Tue Mar 31 2020 18:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 117.00071 * 2 1 4 4 C 1.38552 * 120.08325 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.01241 * 179.97438 * 4 3 2 6 6 C 1.38279 * 120.17901 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.91601 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47146 * 89.99460 * 7 6 5 9 9 C 1.46904 * 110.99588 * 169.99882 * 8 7 6 10 10 C 1.46893 * 111.00444 * 293.95482 * 8 7 6 11 11 C 1.38196 * 120.16570 * 359.76799 * 6 5 4 12 12 C 1.38723 * 119.98282 * 0.48861 * 11 6 5 13 13 N 1.40129 * 120.08839 * 179.76756 * 12 11 6 14 14 C 1.34777 * 119.99511 * 335.18984 * 13 12 11 15 15 O 1.21294 * 120.00658 * 354.47148 * 14 13 12 16 16 C 1.50701 * 119.99582 * 174.46898 * 14 13 12 17 17 H 1.09002 * 109.47338 * 40.00220 * 16 14 13 18 18 N 1.46899 * 109.47321 * 160.00463 * 16 14 13 19 19 C 1.53000 * 109.47420 * 280.00278 * 16 14 13 20 20 C 1.52993 * 109.47643 * 174.99991 * 19 16 14 21 21 C 1.50696 * 109.47492 * 179.97438 * 20 19 16 22 22 H 1.08000 * 119.99812 * 0.02562 * 21 20 19 23 23 C 1.37881 * 120.00028 * 179.97438 * 21 20 19 24 24 N 1.31504 * 119.99963 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47534 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47316 * 120.00141 * 25 23 21 28 28 H 1.48505 * 109.47018 * 240.00090 * 25 23 21 29 29 H 1.09001 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46813 * 300.00059 * 1 2 3 31 31 H 1.09001 * 109.47347 * 59.99912 * 1 2 3 32 32 H 1.07995 * 119.99016 * 359.97392 * 4 3 2 33 33 H 1.08003 * 119.91001 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47343 * 210.00221 * 7 6 5 35 35 H 1.09007 * 109.46767 * 329.99792 * 7 6 5 36 36 H 1.09001 * 109.46967 * 60.00765 * 9 8 7 37 37 H 1.09005 * 109.47136 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.47207 * 300.00115 * 9 8 7 39 39 H 1.08999 * 109.47541 * 60.00087 * 10 8 7 40 40 H 1.09000 * 109.47533 * 180.02562 * 10 8 7 41 41 H 1.09002 * 109.47046 * 300.00333 * 10 8 7 42 42 H 1.07997 * 120.00451 * 180.25828 * 11 6 5 43 43 H 0.96993 * 119.99966 * 155.19155 * 13 12 11 44 44 H 1.00913 * 110.99235 * 296.04559 * 18 16 14 45 45 H 1.00899 * 110.99847 * 59.99366 * 18 16 14 46 46 H 1.09009 * 109.47270 * 295.00272 * 19 16 14 47 47 H 1.09001 * 109.47006 * 54.99555 * 19 16 14 48 48 H 1.09000 * 109.47074 * 299.99823 * 20 19 16 49 49 H 1.09001 * 109.47276 * 59.99729 * 20 19 16 50 50 H 0.97006 * 120.00270 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9226 3.6056 0.0011 6 6 3.3033 3.6805 0.0016 7 6 3.9830 5.0256 0.0028 8 7 4.2032 5.4617 1.3881 9 6 5.0693 6.6474 1.4353 10 6 2.9269 5.7146 2.0697 11 6 4.0615 2.5251 0.0064 12 6 3.4373 1.2863 0.0005 13 7 4.2039 0.1133 0.0005 14 6 5.4615 0.1303 -0.4841 15 8 5.8949 1.1331 -1.0112 16 6 6.3291 -1.0966 -0.3709 17 1 5.7293 -1.9853 -0.5677 18 7 7.4211 -1.0162 -1.3503 19 6 6.9147 -1.1789 1.0402 20 6 7.6934 -2.4868 1.1939 21 6 8.2707 -2.5675 2.5835 22 1 8.0990 -1.7661 3.2869 23 6 9.0173 -3.6648 2.9573 24 7 9.2259 -4.6408 2.1009 25 14 9.7323 -3.7651 4.6801 26 1 9.3554 -2.5487 5.4441 27 1 9.1975 -4.9671 5.3688 28 1 11.2120 -3.8594 4.5972 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 0.2149 2.3195 0.0005 33 1 1.3340 4.5112 0.0019 34 1 4.9414 4.9489 -0.5108 35 1 3.3527 5.7516 -0.5109 36 1 4.6006 7.4618 0.8829 37 1 5.2164 6.9489 2.4724 38 1 6.0337 6.4111 0.9857 39 1 2.3337 4.8002 2.0814 40 1 3.1190 6.0365 3.0932 41 1 2.3806 6.4952 1.5402 42 1 5.1397 2.5867 0.0111 43 1 3.8296 -0.7107 0.3492 44 1 7.0623 -1.0259 -2.2934 45 1 7.9921 -0.2001 -1.1890 46 1 7.5852 -0.3353 1.2051 47 1 6.1068 -1.1490 1.7712 48 1 7.0230 -3.3303 1.0291 49 1 8.5014 -2.5167 0.4629 50 1 9.7514 -5.4126 2.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519767340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:34 Heat of formation + Delta-G solvation = -69.330005 kcal Electronic energy + Delta-G solvation = -29114.929951 eV Core-core repulsion = 25141.302937 eV Total energy + Delta-G solvation = -3973.627014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99489 -40.61465 -39.21831 -37.61127 -36.80314 -35.82687 -34.82914 -32.00838 -31.91664 -31.07671 -28.64867 -28.47647 -28.12627 -26.98169 -25.73424 -23.80748 -23.32970 -22.31528 -21.75823 -21.09694 -19.32221 -18.66671 -18.15628 -18.09000 -17.25612 -16.86463 -16.66869 -16.47778 -16.34824 -16.18575 -16.00076 -15.72662 -15.62637 -15.10651 -14.94918 -14.57791 -14.41839 -14.26550 -13.86481 -13.71896 -13.43891 -13.23821 -13.13713 -13.07869 -12.82162 -12.62592 -12.57871 -12.50220 -12.27569 -12.19111 -12.16604 -11.91303 -11.72588 -11.65175 -11.45285 -11.20409 -10.92208 -10.48953 -9.69144 -9.54018 -9.30847 -8.74674 -8.13583 -6.23613 0.20315 0.35623 1.41652 1.42376 1.46897 1.55460 1.97220 2.32623 2.45112 2.64939 3.19463 3.25235 3.47100 3.66664 3.83904 3.85131 4.06031 4.07023 4.14151 4.27599 4.29620 4.35821 4.42350 4.43652 4.46458 4.58359 4.61057 4.71875 4.76061 4.77250 4.77583 4.83929 4.90959 5.00565 5.03701 5.05551 5.23222 5.23916 5.40175 5.57768 5.62198 5.79587 5.84261 5.98706 6.04783 6.05456 6.11637 6.30915 6.33401 6.40556 6.50616 6.94753 7.00142 7.44385 8.97856 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010140 B = 0.002780 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.611787 B =10067.973319 C =11179.963467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.093 3.907 4 C -0.183 4.183 5 C -0.088 4.088 6 C -0.102 4.102 7 C 0.103 3.897 8 N -0.566 5.566 9 C 0.025 3.975 10 C 0.023 3.977 11 C -0.094 4.094 12 C 0.096 3.904 13 N -0.653 5.653 14 C 0.488 3.512 15 O -0.555 6.555 16 C 0.090 3.910 17 H 0.112 0.888 18 N -0.815 5.815 19 C -0.081 4.081 20 C 0.040 3.960 21 C -0.544 4.544 22 H 0.054 0.946 23 C 0.002 3.998 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.280 1.280 29 H 0.115 0.885 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.150 0.850 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.125 0.875 43 H 0.422 0.578 44 H 0.348 0.652 45 H 0.347 0.653 46 H 0.044 0.956 47 H 0.063 0.937 48 H -0.005 1.005 49 H 0.008 0.992 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.219 19.937 -5.071 30.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.045 3.955 4 C -0.202 4.202 5 C -0.107 4.107 6 C -0.103 4.103 7 C -0.024 4.024 8 N -0.290 5.290 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.115 4.115 12 C 0.001 3.999 13 N -0.297 5.297 14 C 0.275 3.725 15 O -0.433 6.433 16 C -0.026 4.026 17 H 0.130 0.870 18 N -0.344 5.344 19 C -0.120 4.120 20 C 0.003 3.997 21 C -0.582 4.582 22 H 0.072 0.928 23 C -0.196 4.196 24 N -0.569 5.569 25 Si 0.784 3.216 26 H -0.189 1.189 27 H -0.202 1.202 28 H -0.205 1.205 29 H 0.134 0.866 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.180 0.820 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.142 0.858 43 H 0.260 0.740 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.063 0.937 47 H 0.081 0.919 48 H 0.013 0.987 49 H 0.027 0.973 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.193 19.167 -4.898 28.991 hybrid contribution -0.430 0.744 0.198 0.881 sum -21.623 19.910 -4.700 29.766 Atomic orbital electron populations 1.23354 0.75989 1.05569 1.02460 1.86009 1.23808 1.26142 1.89023 1.18796 0.89803 0.86182 1.00711 1.21314 1.01148 0.90783 1.06922 1.21060 0.93124 0.98058 0.98429 1.19642 0.93846 0.94243 1.02573 1.20930 0.99801 0.92291 0.89363 1.61918 1.16448 1.35093 1.15589 1.22402 0.96887 0.90318 1.02634 1.22463 0.90125 1.00894 0.99028 1.21017 1.00801 0.90251 0.99438 1.17436 0.88011 0.87297 1.07116 1.43494 1.13793 1.11789 1.60638 1.22642 0.82055 0.91625 0.76140 1.90601 1.73482 1.35095 1.44151 1.21622 0.91292 0.94014 0.95624 0.87040 1.58982 1.20932 1.48301 1.06168 1.21390 0.99063 0.99517 0.92001 1.18819 0.94532 0.91325 0.95002 1.21752 1.32450 1.04389 0.99578 0.92767 1.25888 0.96795 0.95460 1.01420 1.70106 1.40852 1.09241 1.36729 0.85487 0.78052 0.78267 0.79754 1.18932 1.20236 1.20549 0.86645 0.91334 0.91428 0.82017 0.83240 0.91069 0.92175 0.94435 0.90633 0.91799 0.91462 0.91093 0.94260 0.85757 0.74024 0.83879 0.83922 0.93693 0.91858 0.98680 0.97326 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -6.95 9.91 -93.25 -0.92 -7.87 16 3 C 0.09 2.14 6.70 22.60 0.15 2.29 16 4 C -0.18 -3.18 9.04 22.35 0.20 -2.98 16 5 C -0.09 -1.53 7.95 22.28 0.18 -1.36 16 6 C -0.10 -2.33 4.88 -19.86 -0.10 -2.43 16 7 C 0.10 2.07 5.11 85.56 0.44 2.51 16 8 N -0.57 -11.33 5.01 -953.47 -4.78 -16.11 16 9 C 0.03 0.41 9.57 127.69 1.22 1.63 16 10 C 0.02 0.35 9.13 127.69 1.17 1.52 16 11 C -0.09 -2.78 8.37 22.38 0.19 -2.59 16 12 C 0.10 2.75 6.45 38.18 0.25 3.00 16 13 N -0.65 -19.01 5.29 -303.13 -1.60 -20.61 16 14 C 0.49 16.08 6.87 87.66 0.60 16.68 16 15 O -0.55 -20.48 13.42 -3.07 -0.04 -20.52 16 16 C 0.09 3.11 3.15 44.17 0.14 3.25 16 17 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 18 N -0.81 -27.97 8.44 -171.80 -1.45 -29.42 16 19 C -0.08 -3.39 4.78 30.59 0.15 -3.24 16 20 C 0.04 2.14 4.86 29.84 0.15 2.28 16 21 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 22 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 23 C 0.00 0.13 5.46 84.66 0.46 0.59 16 24 N -0.93 -57.15 13.28 21.45 0.28 -56.87 16 25 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 29 H 0.12 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 31 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 32 H 0.16 1.70 6.30 -2.91 -0.02 1.68 16 33 H 0.15 1.71 8.03 -2.91 -0.02 1.68 16 34 H 0.07 1.58 8.01 -2.39 -0.02 1.56 16 35 H 0.06 0.95 8.06 -2.38 -0.02 0.93 16 36 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 38 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 39 H 0.07 1.11 6.16 -2.39 -0.01 1.10 16 40 H 0.07 1.02 8.12 -2.39 -0.02 1.01 16 41 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.12 4.36 5.79 -2.91 -0.02 4.34 16 43 H 0.42 10.92 8.34 -92.71 -0.77 10.15 16 44 H 0.35 10.25 9.06 -89.68 -0.81 9.43 16 45 H 0.35 12.08 8.58 -89.69 -0.77 11.31 16 46 H 0.04 1.94 8.14 -2.38 -0.02 1.93 16 47 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 48 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.01 0.48 7.75 -2.39 -0.02 0.46 16 50 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -73.22 406.29 -1.34 -74.56 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -1.39 Total: 38.43 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 6.53 Total: -8.73 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.54 Total: -123.01 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.97 Total: -28.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.22 -1.34 -74.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519767340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.231 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds