Wall clock time and date at job start Tue Mar 31 2020 18:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00311 * 2 1 4 4 C 1.46904 * 111.00365 * 123.95785 * 2 1 3 5 5 H 1.08996 * 109.46795 * 62.81190 * 4 2 1 6 6 C 1.52997 * 109.47236 * 182.81376 * 4 2 1 7 7 N 1.46505 * 109.47214 * 304.99822 * 6 4 2 8 8 C 1.34775 * 119.99939 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00270 * 4.95614 * 8 7 6 10 10 N 1.34777 * 120.00031 * 184.95778 * 8 7 6 11 11 C 1.46925 * 120.62815 * 354.83698 * 10 8 7 12 12 C 1.53191 * 108.89398 * 233.67468 * 11 10 8 13 13 C 1.53038 * 109.31434 * 305.29552 * 12 11 10 14 14 C 1.50699 * 109.46000 * 181.37250 * 13 12 11 15 15 H 1.08002 * 120.00235 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46897 * 89.99980 * 18 16 14 20 20 H 1.48500 * 109.47015 * 209.99786 * 18 16 14 21 21 H 1.48501 * 109.46891 * 329.99894 * 18 16 14 22 22 C 1.53036 * 109.53608 * 61.36176 * 13 12 11 23 23 C 1.47202 * 120.81746 * 174.97749 * 10 8 7 24 24 C 1.50703 * 109.46995 * 302.81191 * 4 2 1 25 25 C 1.34515 * 125.78859 * 133.27471 * 24 4 2 26 26 C 1.41376 * 106.84129 * 180.02562 * 25 24 4 27 27 C 1.34512 * 106.84227 * 0.02562 * 26 25 24 28 28 O 1.34299 * 125.78985 * 312.97074 * 24 4 2 29 29 H 1.09006 * 109.46726 * 296.04190 * 1 2 3 30 30 H 1.08999 * 109.47226 * 56.03920 * 1 2 3 31 31 H 1.09000 * 109.46973 * 176.04603 * 1 2 3 32 32 H 1.08998 * 109.47324 * 187.47479 * 3 2 1 33 33 H 1.09000 * 109.47219 * 307.48469 * 3 2 1 34 34 H 1.09008 * 109.46771 * 67.47912 * 3 2 1 35 35 H 1.08997 * 109.47196 * 185.00102 * 6 4 2 36 36 H 1.08999 * 109.47579 * 64.99843 * 6 4 2 37 37 H 0.97000 * 119.99676 * 0.02562 * 7 6 4 38 38 H 1.08997 * 109.58846 * 113.81668 * 11 10 8 39 39 H 1.09007 * 109.59038 * 353.53477 * 11 10 8 40 40 H 1.09004 * 109.49670 * 65.25072 * 12 11 10 41 41 H 1.09002 * 109.49909 * 185.30650 * 12 11 10 42 42 H 1.08998 * 109.45615 * 301.34229 * 13 12 11 43 43 H 0.97002 * 119.99487 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.49829 * 58.59305 * 22 13 12 45 45 H 1.09001 * 109.49690 * 178.68103 * 22 13 12 46 46 H 1.09007 * 109.52947 * 6.53905 * 23 10 8 47 47 H 1.08994 * 109.67772 * 246.23360 * 23 10 8 48 48 H 1.08009 * 126.57783 * 0.03950 * 25 24 4 49 49 H 1.07999 * 126.57934 * 179.97438 * 26 25 24 50 50 H 1.08002 * 125.79330 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.6873 -1.8077 1.0478 6 6 3.5233 -0.6848 1.1437 7 7 4.0413 -1.1321 -0.1517 8 6 5.3700 -1.1466 -0.3774 9 8 6.1424 -0.8752 0.5215 10 7 5.8424 -1.4619 -1.5996 11 6 4.9302 -1.9013 -2.6643 12 6 5.4255 -3.2398 -3.2209 13 6 6.8826 -3.0950 -3.6658 14 6 7.3628 -4.4007 -4.2450 15 1 6.6959 -5.2490 -4.2908 16 6 8.6541 -4.5128 -4.7154 17 7 9.4663 -3.4801 -4.6591 18 14 9.2496 -6.1316 -5.4327 19 1 8.9798 -6.1550 -6.8929 20 1 10.7091 -6.2704 -5.1967 21 1 8.5331 -7.2560 -4.7788 22 6 7.7505 -2.7216 -2.4619 23 6 7.2817 -1.3772 -1.8967 24 6 1.4567 -0.1917 2.4224 25 6 0.9311 -0.8971 3.4400 26 6 0.5554 0.0355 4.4339 27 6 0.8733 1.2552 3.9640 28 8 1.4253 1.1109 2.7481 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5741 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0769 1.3454 -0.1337 33 1 1.5419 1.9348 -0.8155 34 1 1.7582 1.8516 0.9494 35 1 3.9179 -1.3243 1.9332 36 1 3.8317 0.3452 1.3223 37 1 3.4281 -1.4178 -0.8468 38 1 4.9138 -1.1578 -3.4613 39 1 3.9262 -2.0235 -2.2580 40 1 5.3556 -4.0039 -2.4467 41 1 4.8112 -3.5289 -4.0737 42 1 6.9553 -2.3136 -4.4222 43 1 10.3748 -3.5591 -4.9897 44 1 7.6589 -3.4906 -1.6948 45 1 8.7916 -2.6416 -2.7748 46 1 7.8302 -1.1542 -0.9815 47 1 7.4593 -0.5906 -2.6300 48 1 0.8180 -1.9701 3.4886 49 1 0.0996 -0.1883 5.3871 50 1 0.7171 2.1912 4.4797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542893316.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:12 Heat of formation + Delta-G solvation = 3.456493 kcal Electronic energy + Delta-G solvation = -29854.033327 eV Core-core repulsion = 25883.562572 eV Total energy + Delta-G solvation = -3970.470755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.99563 -39.95165 -38.33723 -36.75817 -34.28552 -33.47503 -33.33972 -31.37580 -30.84859 -29.98550 -28.26253 -27.59996 -26.06322 -24.47932 -22.99460 -22.40673 -22.08422 -21.84761 -20.33039 -20.09182 -18.90095 -17.78578 -17.37813 -16.66208 -16.29083 -16.21883 -15.87974 -15.19974 -14.99340 -14.83157 -14.53367 -14.18632 -13.97552 -13.60120 -13.25853 -13.19380 -13.08150 -12.97084 -12.81020 -12.59500 -12.43468 -12.37616 -12.10845 -11.97239 -11.82210 -11.69136 -11.41153 -11.06645 -10.90906 -10.61169 -10.37686 -10.23846 -10.01204 -9.71248 -9.51199 -9.12645 -8.96630 -8.89403 -8.82542 -8.70350 -8.32516 -7.81024 -5.98067 -4.04579 1.36962 2.28120 2.56365 3.12577 3.30951 3.38227 3.41146 3.59192 3.67686 4.16535 4.43921 4.44467 4.48413 4.68473 4.74783 4.89958 4.92276 5.14909 5.29503 5.31637 5.34674 5.47618 5.49068 5.53523 5.57095 5.58899 5.67997 5.74325 5.85322 5.92607 5.95148 6.12789 6.14816 6.32891 6.48044 6.49641 6.55453 6.61273 6.68602 6.73072 6.85131 6.89066 7.04520 7.22863 7.31373 7.57411 7.75773 7.98576 8.11251 8.41577 8.44941 8.98742 9.03878 9.60212 11.07254 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025820 B = 0.002287 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.165756 B =12240.670662 C =12431.371831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.530 5.530 3 C 0.010 3.990 4 C 0.153 3.847 5 H 0.119 0.881 6 C 0.148 3.852 7 N -0.743 5.743 8 C 0.705 3.295 9 O -0.604 6.604 10 N -0.618 5.618 11 C 0.114 3.886 12 C -0.123 4.123 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.123 4.123 23 C 0.127 3.873 24 C -0.037 4.037 25 C -0.198 4.198 26 C -0.213 4.213 27 C -0.045 4.045 28 O -0.167 6.167 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.522 9.577 13.201 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.252 5.252 3 C -0.137 4.137 4 C 0.044 3.956 5 H 0.137 0.863 6 C 0.023 3.977 7 N -0.402 5.402 8 C 0.407 3.593 9 O -0.484 6.484 10 N -0.354 5.354 11 C -0.009 4.009 12 C -0.162 4.162 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.162 4.162 23 C 0.005 3.995 24 C -0.090 4.090 25 C -0.219 4.219 26 C -0.232 4.232 27 C -0.113 4.113 28 O -0.063 6.063 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.241 0.759 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.121 0.879 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.166 0.834 49 H 0.165 0.835 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -19.488 9.851 13.141 25.485 hybrid contribution -0.414 -0.780 0.316 0.938 sum -19.902 9.071 13.457 25.680 Atomic orbital electron populations 1.22412 0.86642 1.02531 1.00842 1.62171 1.08465 1.15106 1.39430 1.22687 1.01728 0.88017 1.01315 1.20881 0.94766 0.98455 0.81543 0.86339 1.21112 0.89481 1.00893 0.86250 1.45053 1.05902 1.72619 1.16673 1.15830 0.82010 0.78401 0.83075 1.90863 1.56343 1.57849 1.43328 1.47480 1.09188 1.69168 1.09559 1.21692 0.91424 0.97896 0.89893 1.22007 1.00475 0.94195 0.99493 1.18620 0.88252 0.96947 0.93093 1.21193 0.97134 0.97314 1.39420 0.92783 1.24966 0.96895 0.96326 0.95822 1.69847 1.06663 1.29535 1.46842 0.86629 0.77922 0.84249 0.79380 1.20771 1.21276 1.20030 1.22012 1.04114 0.92458 0.97573 1.21795 0.77761 0.99942 0.99982 1.23284 1.05133 0.81313 0.99233 1.21681 1.05179 1.00869 0.94124 1.21828 1.07148 0.92547 1.01701 1.24149 1.01604 1.00372 0.85143 1.84167 1.63328 1.27028 1.31814 0.95231 0.90969 0.91118 0.90522 0.91271 0.93564 0.90861 0.91412 0.75906 0.92041 0.92062 0.92965 0.92215 0.95512 0.92987 0.94374 0.87919 0.90671 0.92603 0.83352 0.83485 0.78284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.27 60.06 0.56 0.74 16 2 N -0.53 -4.78 4.51 -244.59 -1.10 -5.88 16 3 C 0.01 0.10 8.75 60.06 0.53 0.62 16 4 C 0.15 1.42 2.51 -68.86 -0.17 1.25 16 5 H 0.12 0.96 8.12 -51.93 -0.42 0.54 16 6 C 0.15 1.79 4.43 -4.04 -0.02 1.78 16 7 N -0.74 -10.26 5.16 -65.23 -0.34 -10.59 16 8 C 0.71 12.92 8.30 -86.92 -0.72 12.20 16 9 O -0.60 -13.22 15.79 5.29 0.08 -13.13 16 10 N -0.62 -11.43 2.98 -178.28 -0.53 -11.96 16 11 C 0.11 1.86 6.38 -3.71 -0.02 1.84 16 12 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 13 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 14 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.12 -2.89 5.15 -26.62 -0.14 -3.03 16 23 C 0.13 2.62 6.45 -3.56 -0.02 2.59 16 24 C -0.04 -0.35 4.34 -35.62 -0.15 -0.51 16 25 C -0.20 -1.76 10.79 -39.70 -0.43 -2.18 16 26 C -0.21 -1.70 10.91 -39.71 -0.43 -2.14 16 27 C -0.04 -0.35 12.09 29.42 0.36 0.01 16 28 O -0.17 -1.64 7.88 5.71 0.04 -1.60 16 29 H 0.03 0.24 6.95 -51.93 -0.36 -0.12 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.85 6.43 -51.93 -0.33 0.52 16 33 H 0.07 0.58 8.06 -51.93 -0.42 0.17 16 34 H 0.05 0.45 5.21 -51.92 -0.27 0.18 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.90 6.71 -51.93 -0.35 0.55 16 37 H 0.40 4.93 5.63 -40.82 -0.23 4.70 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.81 5.64 -51.92 -0.29 0.52 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 46 H 0.07 1.60 7.01 -51.92 -0.36 1.23 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 49 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -31.43 388.32 -9.74 -41.18 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.97 Total: 5.20 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.39 Total: -0.83 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -1.34 Total: -52.74 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.13 Total: -14.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.43 -9.74 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542893316.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.634 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds