Wall clock time and date at job start Tue Mar 31 2020 18:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00311 * 2 1 4 4 C 1.46904 * 111.00365 * 123.95785 * 2 1 3 5 5 H 1.08996 * 109.46795 * 62.81190 * 4 2 1 6 6 C 1.52997 * 109.47236 * 182.81376 * 4 2 1 7 7 N 1.46505 * 109.47214 * 304.99822 * 6 4 2 8 8 C 1.34775 * 119.99939 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00270 * 4.95614 * 8 7 6 10 10 N 1.34777 * 120.00031 * 184.95778 * 8 7 6 11 11 C 1.46925 * 120.62815 * 354.83698 * 10 8 7 12 12 C 1.53191 * 108.89398 * 233.67468 * 11 10 8 13 13 C 1.53038 * 109.31434 * 305.29552 * 12 11 10 14 14 C 1.50699 * 109.46000 * 181.37250 * 13 12 11 15 15 H 1.08002 * 120.00235 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46897 * 89.99980 * 18 16 14 20 20 H 1.48500 * 109.47015 * 209.99786 * 18 16 14 21 21 H 1.48501 * 109.46891 * 329.99894 * 18 16 14 22 22 C 1.53036 * 109.53608 * 61.36176 * 13 12 11 23 23 C 1.47202 * 120.81746 * 174.97749 * 10 8 7 24 24 C 1.50703 * 109.46995 * 302.81191 * 4 2 1 25 25 C 1.34515 * 125.78859 * 133.27471 * 24 4 2 26 26 C 1.41376 * 106.84129 * 180.02562 * 25 24 4 27 27 C 1.34512 * 106.84227 * 0.02562 * 26 25 24 28 28 O 1.34299 * 125.78985 * 312.97074 * 24 4 2 29 29 H 1.09006 * 109.46726 * 296.04190 * 1 2 3 30 30 H 1.08999 * 109.47226 * 56.03920 * 1 2 3 31 31 H 1.09000 * 109.46973 * 176.04603 * 1 2 3 32 32 H 1.08998 * 109.47324 * 187.47479 * 3 2 1 33 33 H 1.09000 * 109.47219 * 307.48469 * 3 2 1 34 34 H 1.09008 * 109.46771 * 67.47912 * 3 2 1 35 35 H 1.08997 * 109.47196 * 185.00102 * 6 4 2 36 36 H 1.08999 * 109.47579 * 64.99843 * 6 4 2 37 37 H 0.97000 * 119.99676 * 0.02562 * 7 6 4 38 38 H 1.08997 * 109.58846 * 113.81668 * 11 10 8 39 39 H 1.09007 * 109.59038 * 353.53477 * 11 10 8 40 40 H 1.09004 * 109.49670 * 65.25072 * 12 11 10 41 41 H 1.09002 * 109.49909 * 185.30650 * 12 11 10 42 42 H 1.08998 * 109.45615 * 301.34229 * 13 12 11 43 43 H 0.97002 * 119.99487 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.49829 * 58.59305 * 22 13 12 45 45 H 1.09001 * 109.49690 * 178.68103 * 22 13 12 46 46 H 1.09007 * 109.52947 * 6.53905 * 23 10 8 47 47 H 1.08994 * 109.67772 * 246.23360 * 23 10 8 48 48 H 1.08009 * 126.57783 * 0.03950 * 25 24 4 49 49 H 1.07999 * 126.57934 * 179.97438 * 26 25 24 50 50 H 1.08002 * 125.79330 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 1.6873 -1.8077 1.0478 6 6 3.5233 -0.6848 1.1437 7 7 4.0413 -1.1321 -0.1517 8 6 5.3700 -1.1466 -0.3774 9 8 6.1424 -0.8752 0.5215 10 7 5.8424 -1.4619 -1.5996 11 6 4.9302 -1.9013 -2.6643 12 6 5.4255 -3.2398 -3.2209 13 6 6.8826 -3.0950 -3.6658 14 6 7.3628 -4.4007 -4.2450 15 1 6.6959 -5.2490 -4.2908 16 6 8.6541 -4.5128 -4.7154 17 7 9.4663 -3.4801 -4.6591 18 14 9.2496 -6.1316 -5.4327 19 1 8.9798 -6.1550 -6.8929 20 1 10.7091 -6.2704 -5.1967 21 1 8.5331 -7.2560 -4.7788 22 6 7.7505 -2.7216 -2.4619 23 6 7.2817 -1.3772 -1.8967 24 6 1.4567 -0.1917 2.4224 25 6 0.9311 -0.8971 3.4400 26 6 0.5554 0.0355 4.4339 27 6 0.8733 1.2552 3.9640 28 8 1.4253 1.1109 2.7481 29 1 -0.3633 0.4512 0.9234 30 1 -0.3633 0.5741 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0769 1.3454 -0.1337 33 1 1.5419 1.9348 -0.8155 34 1 1.7582 1.8516 0.9494 35 1 3.9179 -1.3243 1.9332 36 1 3.8317 0.3452 1.3223 37 1 3.4281 -1.4178 -0.8468 38 1 4.9138 -1.1578 -3.4613 39 1 3.9262 -2.0235 -2.2580 40 1 5.3556 -4.0039 -2.4467 41 1 4.8112 -3.5289 -4.0737 42 1 6.9553 -2.3136 -4.4222 43 1 10.3748 -3.5591 -4.9897 44 1 7.6589 -3.4906 -1.6948 45 1 8.7916 -2.6416 -2.7748 46 1 7.8302 -1.1542 -0.9815 47 1 7.4593 -0.5906 -2.6300 48 1 0.8180 -1.9701 3.4886 49 1 0.0996 -0.1883 5.3871 50 1 0.7171 2.1912 4.4797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542893316.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:11 Heat of formation + Delta-G solvation = -16.372291 kcal Electronic energy + Delta-G solvation = -29854.893168 eV Core-core repulsion = 25883.562572 eV Total energy + Delta-G solvation = -3971.330595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.63134 -41.36294 -39.26068 -38.30644 -35.56039 -35.19871 -34.03618 -32.91154 -32.09255 -31.40562 -29.15043 -28.34640 -27.78597 -25.47663 -24.59216 -23.79688 -22.90010 -22.69377 -21.64182 -21.06884 -20.35664 -19.16180 -18.35530 -18.07545 -17.50444 -17.23215 -16.88131 -16.52133 -16.24739 -16.07258 -15.63156 -15.24821 -15.06957 -14.91100 -14.84612 -14.54104 -14.20000 -14.10388 -13.88225 -13.69664 -13.54567 -13.34701 -13.20439 -13.08026 -12.94634 -12.79305 -12.67315 -12.51087 -12.43306 -12.22599 -12.13090 -11.90184 -11.40675 -11.31811 -10.90010 -10.86032 -10.75892 -10.37791 -10.18708 -9.62679 -9.36482 -9.33733 -8.04702 -6.18368 0.72202 1.42645 1.44501 1.53410 1.60184 1.76565 2.05827 2.18276 2.46003 2.90212 3.03591 3.21840 3.59405 3.71439 4.02691 4.13745 4.15404 4.23458 4.28753 4.29039 4.38831 4.51301 4.52326 4.60586 4.61867 4.64981 4.72139 4.75126 4.77011 4.92139 4.95203 4.99758 5.02131 5.02834 5.05383 5.23419 5.26856 5.27935 5.47397 5.51454 5.54245 5.57567 5.69078 5.83931 5.93608 6.02086 6.12419 6.15921 6.21157 6.41853 6.93326 7.06545 7.49521 7.60968 8.98655 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025820 B = 0.002287 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.165756 B =12240.670662 C =12431.371831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.532 5.532 3 C 0.015 3.985 4 C 0.164 3.836 5 H 0.135 0.865 6 C 0.151 3.849 7 N -0.721 5.721 8 C 0.703 3.297 9 O -0.643 6.643 10 N -0.621 5.621 11 C 0.120 3.880 12 C -0.115 4.115 13 C 0.045 3.955 14 C -0.531 4.531 15 H 0.053 0.947 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.271 1.271 22 C -0.111 4.111 23 C 0.140 3.860 24 C -0.055 4.055 25 C -0.203 4.203 26 C -0.226 4.226 27 C -0.047 4.047 28 O -0.183 6.183 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.004 0.996 43 H 0.260 0.740 44 H 0.020 0.980 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.161 0.839 49 H 0.166 0.834 50 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.161 9.322 13.433 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.254 5.254 3 C -0.133 4.133 4 C 0.054 3.946 5 H 0.153 0.847 6 C 0.026 3.974 7 N -0.380 5.380 8 C 0.404 3.596 9 O -0.526 6.526 10 N -0.357 5.357 11 C -0.002 4.002 12 C -0.153 4.153 13 C 0.027 3.973 14 C -0.569 4.569 15 H 0.071 0.929 16 C -0.187 4.187 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.195 1.195 22 C -0.150 4.150 23 C 0.016 3.984 24 C -0.107 4.107 25 C -0.223 4.223 26 C -0.245 4.245 27 C -0.114 4.114 28 O -0.080 6.080 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.023 0.977 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.179 0.821 49 H 0.183 0.817 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -22.191 9.587 13.361 27.620 hybrid contribution 0.380 -0.673 0.302 0.830 sum -21.811 8.913 13.663 27.236 Atomic orbital electron populations 1.22427 0.85418 1.03370 1.00828 1.62203 1.09481 1.14640 1.39110 1.22603 1.00563 0.88589 1.01545 1.20761 0.92367 0.99456 0.82009 0.84713 1.21145 0.91647 0.99690 0.84892 1.44866 1.04255 1.71300 1.17599 1.15977 0.83095 0.78143 0.82369 1.90838 1.57727 1.59524 1.44495 1.47421 1.08480 1.69440 1.10340 1.21776 0.92430 0.96276 0.89760 1.21865 0.97653 0.95927 0.99894 1.18602 0.91287 0.95035 0.92391 1.21593 0.97389 0.98427 1.39456 0.92894 1.25716 0.97247 0.99324 0.96388 1.69981 1.06791 1.31214 1.47550 0.85681 0.77191 0.80647 0.78858 1.20035 1.21329 1.19541 1.21774 1.02603 0.93571 0.97042 1.21450 0.79398 0.98172 0.99345 1.23269 1.06311 0.81492 0.99611 1.21982 1.04579 1.01725 0.94049 1.22148 1.07415 0.92488 1.02404 1.24828 1.00445 1.01744 0.84426 1.84152 1.63805 1.27273 1.32772 0.95944 0.90118 0.89982 0.92443 0.90225 0.93966 0.91804 0.92796 0.74630 0.90801 0.88187 0.93668 0.90737 0.97749 0.93116 0.96151 0.90958 0.91693 0.92066 0.82131 0.81687 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.27 127.69 1.18 1.52 16 2 N -0.53 -8.45 4.51 -927.73 -4.18 -12.63 16 3 C 0.01 0.26 8.75 127.69 1.12 1.38 16 4 C 0.16 2.75 2.51 44.17 0.11 2.86 16 5 H 0.14 1.82 8.12 -2.39 -0.02 1.80 16 6 C 0.15 3.53 4.43 86.38 0.38 3.91 16 7 N -0.72 -18.78 5.16 -478.54 -2.47 -21.25 16 8 C 0.70 25.25 8.30 179.05 1.49 26.74 16 9 O -0.64 -28.38 15.79 -3.98 -0.06 -28.45 16 10 N -0.62 -22.46 2.98 -836.21 -2.50 -24.95 16 11 C 0.12 3.63 6.38 86.36 0.55 4.18 16 12 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 13 C 0.05 2.19 2.06 -11.52 -0.02 2.16 16 14 C -0.53 -28.59 8.56 25.60 0.22 -28.37 16 15 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 16 C 0.01 0.64 5.30 84.66 0.45 1.09 16 17 N -0.92 -52.42 11.30 21.45 0.24 -52.18 16 18 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C -0.11 -5.37 5.15 30.67 0.16 -5.21 16 23 C 0.14 5.84 6.45 86.31 0.56 6.39 16 24 C -0.05 -0.96 4.34 24.83 0.11 -0.86 16 25 C -0.20 -3.24 10.79 22.19 0.24 -3.00 16 26 C -0.23 -3.17 10.91 22.19 0.24 -2.93 16 27 C -0.05 -0.65 12.09 66.97 0.81 0.16 16 28 O -0.18 -3.37 7.88 -2.50 -0.02 -3.39 16 29 H 0.02 0.32 6.95 -2.38 -0.02 0.30 16 30 H 0.08 0.88 8.08 -2.39 -0.02 0.87 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.23 6.43 -2.39 -0.02 1.22 16 33 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 34 H 0.04 0.79 5.21 -2.38 -0.01 0.77 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.43 6.71 -2.39 -0.02 1.42 16 37 H 0.41 8.92 5.63 -92.71 -0.52 8.40 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.27 5.64 -2.38 -0.01 2.26 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 44 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.07 3.94 6.03 -2.39 -0.01 3.93 16 46 H 0.06 2.84 7.01 -2.38 -0.02 2.82 16 47 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 49 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 50 H 0.23 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -69.24 388.32 1.21 -68.03 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.42 Total: 23.47 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 7.75 Total: 5.89 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -8.91 Total: -111.01 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.08 Total: -31.84 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.24 1.21 -68.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542893316.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.655 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds