Wall clock time and date at job start Tue Mar 31 2020 18:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00297 * 2 1 4 4 C 1.52997 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47635 * 65.00035 * 4 3 2 6 6 C 1.39678 * 120.00488 * 180.02562 * 5 4 3 7 7 C 1.38905 * 120.07451 * 180.02562 * 6 5 4 8 8 C 1.38109 * 119.92227 * 180.02562 * 7 6 5 9 9 C 1.38278 * 120.07429 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.92650 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47138 * 90.00123 * 10 9 8 12 12 C 1.34777 * 119.99665 * 180.28062 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.08994 * 109.47374 * 39.99639 * 14 12 11 16 16 N 1.46899 * 109.46954 * 159.99915 * 14 12 11 17 17 C 1.53003 * 109.47045 * 279.99176 * 14 12 11 18 18 C 1.53000 * 109.47286 * 174.99954 * 17 14 12 19 19 C 1.50701 * 109.47289 * 180.02562 * 18 17 14 20 20 H 1.08003 * 119.99592 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31505 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47066 * 120.00164 * 23 21 19 26 26 H 1.48493 * 109.47409 * 240.00113 * 23 21 19 27 27 C 1.38285 * 120.15362 * 0.27826 * 9 8 7 28 28 C 1.38115 * 120.06838 * 359.45082 * 27 9 8 29 29 H 1.08998 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46977 * 300.00555 * 1 2 3 31 31 H 1.09002 * 109.47141 * 59.99777 * 1 2 3 32 32 H 1.08994 * 109.46796 * 60.00166 * 3 2 1 33 33 H 1.09002 * 109.47025 * 299.99945 * 3 2 1 34 34 H 1.08999 * 109.47290 * 304.99765 * 4 3 2 35 35 H 1.09005 * 109.47034 * 185.00097 * 4 3 2 36 36 H 0.97007 * 119.99927 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.04073 * 359.97438 * 7 6 5 38 38 H 1.08001 * 119.95794 * 179.97438 * 8 7 6 39 39 H 1.09009 * 109.46601 * 330.00026 * 10 9 8 40 40 H 1.08998 * 109.47035 * 210.00533 * 10 9 8 41 41 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 42 42 H 1.00900 * 110.99932 * 296.04066 * 16 14 12 43 43 H 1.00903 * 111.00374 * 59.99775 * 16 14 12 44 44 H 1.08994 * 109.47574 * 295.00663 * 17 14 12 45 45 H 1.09004 * 109.46944 * 55.00483 * 17 14 12 46 46 H 1.08994 * 109.47393 * 300.00821 * 18 17 14 47 47 H 1.09004 * 109.46697 * 60.00377 * 18 17 14 48 48 H 0.96998 * 120.00408 * 179.97438 * 22 21 19 49 49 H 1.07996 * 119.96896 * 179.70164 * 27 9 8 50 50 H 1.08007 * 120.03225 * 180.27979 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 5.3360 0.3478 -1.4844 7 6 5.7551 -0.2397 -2.6712 8 6 7.1009 -0.4528 -2.8968 9 6 8.0307 -0.0816 -1.9430 10 6 9.4984 -0.3151 -2.1929 11 7 10.0734 0.8575 -2.8566 12 6 11.3804 0.8723 -3.1853 13 8 12.0816 -0.0830 -2.9270 14 6 11.9705 2.0761 -3.8736 15 1 11.5540 2.9842 -3.4380 16 7 13.4291 2.0737 -3.6992 17 6 11.6353 2.0258 -5.3656 18 6 12.1258 3.3074 -6.0421 19 6 11.7951 3.2581 -7.5115 20 1 11.2855 2.3988 -7.9217 21 6 12.1429 4.3101 -8.3321 22 7 12.7638 5.3563 -7.8326 23 14 11.7323 4.2493 -10.1533 24 1 11.0374 2.9737 -10.4618 25 1 10.8477 5.3907 -10.4997 26 1 12.9848 4.3355 -10.9464 27 6 7.6166 0.4988 -0.7581 28 6 6.2727 0.7198 -0.5285 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9786 2.1764 0.0889 36 1 3.3224 0.3032 -1.9206 37 1 5.0294 -0.5303 -3.4164 38 1 7.4274 -0.9100 -3.8192 39 1 9.6236 -1.1910 -2.8296 40 1 10.0068 -0.4808 -1.2431 41 1 9.5125 1.6213 -3.0635 42 1 13.6771 2.1714 -2.7260 43 1 13.8394 1.2412 -4.0951 44 1 12.1258 1.1647 -5.8194 45 1 10.5563 1.9379 -5.4927 46 1 11.6353 4.1685 -5.5882 47 1 13.2048 3.3953 -5.9149 48 1 13.0089 6.0962 -8.4099 49 1 8.3449 0.7832 -0.0132 50 1 5.9502 1.1773 0.3952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563076316.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:02 Heat of formation + Delta-G solvation = -70.768855 kcal Electronic energy + Delta-G solvation = -27429.734690 eV Core-core repulsion = 23456.045283 eV Total energy + Delta-G solvation = -3973.689407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.05533 -39.42823 -38.56665 -36.34057 -35.13694 -34.34027 -32.74973 -31.53012 -30.99373 -30.04389 -29.12385 -26.97873 -26.46398 -25.09759 -23.84691 -23.20161 -22.13473 -21.04400 -20.57445 -19.70839 -17.86003 -17.23661 -17.20381 -16.76075 -16.30618 -16.12275 -15.84159 -15.41919 -15.32280 -15.06134 -14.69021 -14.42091 -14.40550 -14.09199 -13.93333 -13.69232 -13.54577 -13.29300 -12.99931 -12.55720 -12.44054 -12.27900 -12.26497 -11.96310 -11.80834 -11.50926 -11.44924 -11.09489 -10.88597 -10.64083 -10.48412 -10.38954 -10.32098 -10.01583 -9.74632 -9.32199 -9.10024 -8.95733 -8.91078 -8.31591 -8.16734 -7.61890 -5.90636 -3.92381 1.28070 1.31141 2.88914 2.99794 3.16517 3.35910 3.38178 3.43412 3.47549 3.87606 4.30146 4.50264 4.53007 4.65546 4.68589 4.71218 4.76496 4.80751 4.83812 4.98681 5.02375 5.13568 5.18066 5.20999 5.22976 5.26756 5.44981 5.51320 5.58437 5.63051 5.75932 5.88335 5.91631 6.09400 6.18992 6.47436 6.49413 6.55709 6.56226 6.63574 6.72373 7.05697 7.14943 7.39235 7.46851 7.72550 7.80850 7.87091 8.00897 8.17408 8.43256 8.52661 9.15973 9.70548 11.20333 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.001918 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.851978 B =14598.266258 C =16394.075700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.128 3.872 5 N -0.743 5.743 6 C 0.222 3.778 7 C -0.195 4.195 8 C -0.049 4.049 9 C -0.165 4.165 10 C 0.167 3.833 11 N -0.726 5.726 12 C 0.482 3.518 13 O -0.557 6.557 14 C 0.078 3.922 15 H 0.097 0.903 16 N -0.808 5.808 17 C -0.095 4.095 18 C 0.030 3.970 19 C -0.521 4.521 20 H 0.052 0.948 21 C 0.057 3.943 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.052 4.052 28 C -0.201 4.201 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.402 0.598 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.403 0.597 42 H 0.333 0.667 43 H 0.347 0.653 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.013 0.987 47 H 0.035 0.965 48 H 0.258 0.742 49 H 0.121 0.879 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.565 -9.394 19.920 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.003 3.997 5 N -0.374 5.374 6 C 0.118 3.882 7 C -0.218 4.218 8 C -0.069 4.069 9 C -0.168 4.168 10 C 0.044 3.956 11 N -0.378 5.378 12 C 0.267 3.733 13 O -0.435 6.435 14 C -0.038 4.038 15 H 0.115 0.885 16 N -0.335 5.335 17 C -0.133 4.133 18 C -0.007 4.007 19 C -0.559 4.559 20 H 0.071 0.929 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.071 4.071 28 C -0.224 4.224 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.238 0.762 42 H 0.145 0.855 43 H 0.161 0.839 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.031 0.969 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.139 0.861 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.907 -9.325 19.802 31.683 hybrid contribution -1.323 -0.334 -0.740 1.552 sum -24.230 -9.659 19.062 32.307 Atomic orbital electron populations 1.22775 0.80663 1.03058 1.00107 1.87943 1.19980 1.27381 1.95446 1.22794 0.93243 0.85476 1.01391 1.21354 0.92090 0.98442 0.87822 1.44560 1.03971 1.68495 1.20369 1.17843 0.83919 0.92936 0.93472 1.20567 0.96340 1.07456 0.97425 1.20847 0.91973 0.96092 0.97948 1.19617 0.94664 1.06340 0.96137 1.20033 0.88881 0.88988 0.97739 1.46315 1.10397 1.19839 1.61267 1.22739 0.81807 0.90878 0.77836 1.90638 1.60430 1.37290 1.55186 1.21826 0.89224 0.93787 0.98927 0.88512 1.59005 1.06810 1.46178 1.21521 1.21646 0.99854 1.02654 0.89161 1.19026 0.97951 0.89966 0.93745 1.21333 1.37480 1.03158 0.93936 0.92930 1.24990 0.95370 0.95629 0.98384 1.69981 1.40661 1.07360 1.35196 0.86603 0.78035 0.77832 0.85902 1.19867 1.21152 1.21073 1.20813 0.95024 0.95197 0.96054 1.20577 0.92682 1.09007 1.00121 0.89425 0.93923 0.93920 0.91607 0.92454 0.91342 0.90613 0.76316 0.86171 0.85832 0.91277 0.91394 0.76207 0.85522 0.83873 0.92888 0.92828 0.96877 0.94661 0.93201 0.86084 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.58 10.65 -35.23 -0.38 -2.96 16 3 C 0.05 0.22 6.07 37.16 0.23 0.45 16 4 C 0.13 0.72 5.30 -4.04 -0.02 0.70 16 5 N -0.74 -5.48 5.68 -58.64 -0.33 -5.82 16 6 C 0.22 2.05 6.65 -83.79 -0.56 1.50 16 7 C -0.20 -1.88 9.90 -39.38 -0.39 -2.27 16 8 C -0.05 -0.51 9.69 -39.61 -0.38 -0.89 16 9 C -0.17 -1.75 5.25 -104.59 -0.55 -2.30 16 10 C 0.17 2.01 5.80 -5.19 -0.03 1.97 16 11 N -0.73 -9.61 5.55 -61.47 -0.34 -9.95 16 12 C 0.48 7.85 7.07 -10.99 -0.08 7.77 16 13 O -0.56 -10.60 16.25 5.55 0.09 -10.51 16 14 C 0.08 1.35 3.15 -68.86 -0.22 1.13 16 15 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 16 N -0.81 -14.04 8.44 -5.66 -0.05 -14.08 16 17 C -0.09 -1.96 4.78 -26.73 -0.13 -2.08 16 18 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 20 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.15 13.28 55.43 0.74 -26.41 16 23 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 C -0.05 -0.50 9.69 -39.61 -0.38 -0.88 16 28 C -0.20 -1.84 9.31 -39.38 -0.37 -2.21 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.42 7.95 -51.93 -0.41 0.01 16 35 H 0.08 0.36 7.95 -51.93 -0.41 -0.05 16 36 H 0.40 2.70 8.49 -40.82 -0.35 2.36 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 40 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.40 4.83 8.46 -40.82 -0.35 4.48 16 42 H 0.33 5.04 9.06 -39.29 -0.36 4.68 16 43 H 0.35 6.13 8.58 -39.29 -0.34 5.80 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 50 H 0.12 0.89 6.74 -52.48 -0.35 0.54 16 LS Contribution 418.45 15.07 6.31 6.31 Total: -1.00 -34.38 418.45 -9.72 -44.10 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.42 Total: 11.29 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.31 Total: -8.89 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.01 Total: -56.27 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.28 Total: -13.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.38 -9.72 -44.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563076316.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.666 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds