Wall clock time and date at job start Tue Mar 31 2020 18:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00297 * 2 1 4 4 C 1.52997 * 109.46973 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47635 * 65.00035 * 4 3 2 6 6 C 1.39678 * 120.00488 * 180.02562 * 5 4 3 7 7 C 1.38905 * 120.07451 * 180.02562 * 6 5 4 8 8 C 1.38109 * 119.92227 * 180.02562 * 7 6 5 9 9 C 1.38278 * 120.07429 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.92650 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.47138 * 90.00123 * 10 9 8 12 12 C 1.34777 * 119.99665 * 180.28062 * 11 10 9 13 13 O 1.21283 * 119.99990 * 359.71991 * 12 11 10 14 14 C 1.50698 * 119.99538 * 179.72653 * 12 11 10 15 15 H 1.08994 * 109.47374 * 39.99639 * 14 12 11 16 16 N 1.46899 * 109.46954 * 159.99915 * 14 12 11 17 17 C 1.53003 * 109.47045 * 279.99176 * 14 12 11 18 18 C 1.53000 * 109.47286 * 174.99954 * 17 14 12 19 19 C 1.50701 * 109.47289 * 180.02562 * 18 17 14 20 20 H 1.08003 * 119.99592 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99954 * 180.02562 * 19 18 17 22 22 N 1.31505 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99858 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47109 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47066 * 120.00164 * 23 21 19 26 26 H 1.48493 * 109.47409 * 240.00113 * 23 21 19 27 27 C 1.38285 * 120.15362 * 0.27826 * 9 8 7 28 28 C 1.38115 * 120.06838 * 359.45082 * 27 9 8 29 29 H 1.08998 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46977 * 300.00555 * 1 2 3 31 31 H 1.09002 * 109.47141 * 59.99777 * 1 2 3 32 32 H 1.08994 * 109.46796 * 60.00166 * 3 2 1 33 33 H 1.09002 * 109.47025 * 299.99945 * 3 2 1 34 34 H 1.08999 * 109.47290 * 304.99765 * 4 3 2 35 35 H 1.09005 * 109.47034 * 185.00097 * 4 3 2 36 36 H 0.97007 * 119.99927 * 359.97438 * 5 4 3 37 37 H 1.07998 * 120.04073 * 359.97438 * 7 6 5 38 38 H 1.08001 * 119.95794 * 179.97438 * 8 7 6 39 39 H 1.09009 * 109.46601 * 330.00026 * 10 9 8 40 40 H 1.08998 * 109.47035 * 210.00533 * 10 9 8 41 41 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 42 42 H 1.00900 * 110.99932 * 296.04066 * 16 14 12 43 43 H 1.00903 * 111.00374 * 59.99775 * 16 14 12 44 44 H 1.08994 * 109.47574 * 295.00663 * 17 14 12 45 45 H 1.09004 * 109.46944 * 55.00483 * 17 14 12 46 46 H 1.08994 * 109.47393 * 300.00821 * 18 17 14 47 47 H 1.09004 * 109.46697 * 60.00377 * 18 17 14 48 48 H 0.96998 * 120.00408 * 179.97438 * 22 21 19 49 49 H 1.07996 * 119.96896 * 179.70164 * 27 9 8 50 50 H 1.08007 * 120.03225 * 180.27979 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 5.3360 0.3478 -1.4844 7 6 5.7551 -0.2397 -2.6712 8 6 7.1009 -0.4528 -2.8968 9 6 8.0307 -0.0816 -1.9430 10 6 9.4984 -0.3151 -2.1929 11 7 10.0734 0.8575 -2.8566 12 6 11.3804 0.8723 -3.1853 13 8 12.0816 -0.0830 -2.9270 14 6 11.9705 2.0761 -3.8736 15 1 11.5540 2.9842 -3.4380 16 7 13.4291 2.0737 -3.6992 17 6 11.6353 2.0258 -5.3656 18 6 12.1258 3.3074 -6.0421 19 6 11.7951 3.2581 -7.5115 20 1 11.2855 2.3988 -7.9217 21 6 12.1429 4.3101 -8.3321 22 7 12.7638 5.3563 -7.8326 23 14 11.7323 4.2493 -10.1533 24 1 11.0374 2.9737 -10.4618 25 1 10.8477 5.3907 -10.4997 26 1 12.9848 4.3355 -10.9464 27 6 7.6166 0.4988 -0.7581 28 6 6.2727 0.7198 -0.5285 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9786 2.1764 0.0889 36 1 3.3224 0.3032 -1.9206 37 1 5.0294 -0.5303 -3.4164 38 1 7.4274 -0.9100 -3.8192 39 1 9.6236 -1.1910 -2.8296 40 1 10.0068 -0.4808 -1.2431 41 1 9.5125 1.6213 -3.0635 42 1 13.6771 2.1714 -2.7260 43 1 13.8394 1.2412 -4.0951 44 1 12.1258 1.1647 -5.8194 45 1 10.5563 1.9379 -5.4927 46 1 11.6353 4.1685 -5.5882 47 1 13.2048 3.3953 -5.9149 48 1 13.0089 6.0962 -8.4099 49 1 8.3449 0.7832 -0.0132 50 1 5.9502 1.1773 0.3952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563076316.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:01 Heat of formation + Delta-G solvation = -96.272794 kcal Electronic energy + Delta-G solvation = -27430.840624 eV Core-core repulsion = 23456.045283 eV Total energy + Delta-G solvation = -3974.795341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10527 -40.37489 -39.01542 -37.15684 -36.66917 -35.34029 -34.78820 -32.22405 -31.89847 -31.70686 -29.85841 -28.15450 -27.22248 -26.32475 -24.78209 -24.38129 -22.78709 -22.30330 -21.77384 -21.10789 -18.76651 -18.43117 -18.04241 -17.61776 -17.45216 -17.26374 -16.81266 -16.48603 -16.38109 -16.03320 -15.97078 -15.50115 -15.26950 -15.02321 -14.90540 -14.69027 -14.46775 -14.26346 -14.23561 -13.81093 -13.59275 -13.45713 -13.32435 -12.99037 -12.81294 -12.63776 -12.50375 -12.34473 -12.21391 -12.12067 -11.80401 -11.74731 -11.63923 -11.24232 -11.04345 -10.88721 -10.68392 -10.47918 -10.09655 -9.82413 -9.60198 -8.30055 -8.12435 -6.22481 0.54137 0.55356 1.41919 1.42922 1.54674 1.56965 2.30976 2.45893 2.47287 2.81456 3.03090 3.20477 3.62260 3.81549 3.90837 3.95501 3.97662 4.14032 4.14386 4.17998 4.33630 4.36532 4.42271 4.49489 4.53603 4.55274 4.64614 4.69073 4.77311 4.81222 4.83439 4.86586 4.93274 4.97833 5.16851 5.27902 5.38504 5.42620 5.45902 5.59281 5.78589 5.86832 5.91197 6.00753 6.13332 6.15984 6.32516 6.41991 6.50610 6.58457 6.80403 6.96318 7.18822 7.45431 8.98936 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.001918 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.851978 B =14598.266258 C =16394.075700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.740 5.740 6 C 0.219 3.781 7 C -0.206 4.206 8 C -0.058 4.058 9 C -0.176 4.176 10 C 0.172 3.828 11 N -0.710 5.710 12 C 0.488 3.512 13 O -0.585 6.585 14 C 0.086 3.914 15 H 0.109 0.891 16 N -0.819 5.819 17 C -0.081 4.081 18 C 0.038 3.962 19 C -0.543 4.543 20 H 0.055 0.945 21 C 0.001 3.999 22 N -0.929 5.929 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.277 1.277 26 H -0.281 1.281 27 C -0.053 4.053 28 C -0.207 4.207 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.411 0.589 42 H 0.346 0.654 43 H 0.345 0.655 44 H 0.042 0.958 45 H 0.066 0.934 46 H -0.006 1.006 47 H 0.006 0.994 48 H 0.262 0.738 49 H 0.132 0.868 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.555 -9.419 20.228 33.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.028 4.028 4 C 0.000 4.000 5 N -0.370 5.370 6 C 0.114 3.886 7 C -0.228 4.228 8 C -0.077 4.077 9 C -0.178 4.178 10 C 0.049 3.951 11 N -0.362 5.362 12 C 0.273 3.727 13 O -0.465 6.465 14 C -0.030 4.030 15 H 0.127 0.873 16 N -0.348 5.348 17 C -0.120 4.120 18 C 0.001 3.999 19 C -0.581 4.581 20 H 0.073 0.927 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.785 3.215 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.207 1.207 27 C -0.072 4.072 28 C -0.229 4.229 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.240 0.760 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.013 0.987 47 H 0.025 0.975 48 H 0.070 0.930 49 H 0.150 0.850 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.956 -9.345 20.134 33.399 hybrid contribution -0.791 -0.311 -0.773 1.149 sum -25.747 -9.656 19.361 33.630 Atomic orbital electron populations 1.22894 0.79555 1.03593 1.00947 1.87900 1.21336 1.28573 1.95649 1.22851 0.92384 0.85021 1.02500 1.21494 0.92998 0.98722 0.86765 1.44687 1.03334 1.67959 1.21006 1.18003 0.84828 0.92416 0.93325 1.20726 0.96312 1.07744 0.98059 1.20938 0.92416 0.96315 0.98060 1.19477 0.93602 1.07832 0.96928 1.20031 0.89906 0.87926 0.97267 1.46244 1.09384 1.20504 1.60064 1.22352 0.82569 0.89883 0.77869 1.90631 1.61324 1.37980 1.56610 1.21625 0.89519 0.95032 0.96842 0.87280 1.58981 1.06962 1.46150 1.22682 1.21380 1.00237 0.99287 0.91060 1.18841 0.95958 0.91819 0.93271 1.21771 1.37515 1.03337 0.95475 0.92654 1.25897 0.95119 0.95200 1.03419 1.70108 1.41634 1.08120 1.37095 0.85485 0.77959 0.78324 0.79769 1.18854 1.20276 1.20663 1.20964 0.95650 0.94751 0.95876 1.20784 0.92438 1.08962 1.00764 0.89159 0.92918 0.93218 0.89926 0.91835 0.91791 0.89433 0.76025 0.85149 0.85790 0.92161 0.91321 0.75253 0.84033 0.84166 0.93943 0.91570 0.98719 0.97540 0.92957 0.85004 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -4.94 10.65 -148.98 -1.59 -6.52 16 3 C 0.05 0.36 6.07 71.98 0.44 0.80 16 4 C 0.12 1.16 5.30 86.38 0.46 1.62 16 5 N -0.74 -9.74 5.68 -339.43 -1.93 -11.67 16 6 C 0.22 3.74 6.65 38.21 0.25 3.99 16 7 C -0.21 -3.75 9.90 22.40 0.22 -3.52 16 8 C -0.06 -1.15 9.69 22.25 0.22 -0.94 16 9 C -0.18 -3.55 5.25 -19.84 -0.10 -3.65 16 10 C 0.17 3.98 5.80 85.63 0.50 4.48 16 11 N -0.71 -18.05 5.55 -466.78 -2.59 -20.64 16 12 C 0.49 15.53 7.07 87.66 0.62 16.15 16 13 O -0.58 -21.99 16.25 -3.04 -0.05 -22.04 16 14 C 0.09 2.92 3.15 44.17 0.14 3.06 16 15 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 16 N -0.82 -28.48 8.44 -171.81 -1.45 -29.93 16 17 C -0.08 -3.35 4.78 30.60 0.15 -3.20 16 18 C 0.04 2.02 4.86 29.85 0.15 2.17 16 19 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 20 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 21 C 0.00 0.08 5.46 84.66 0.46 0.54 16 22 N -0.93 -57.08 13.28 21.45 0.28 -56.80 16 23 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 C -0.05 -0.95 9.69 22.25 0.22 -0.74 16 28 C -0.21 -3.42 9.31 22.40 0.21 -3.22 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.68 7.95 -2.39 -0.02 0.66 16 35 H 0.09 0.63 7.95 -2.38 -0.02 0.61 16 36 H 0.40 4.87 8.49 -92.70 -0.79 4.08 16 37 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.06 1.52 8.08 -2.38 -0.02 1.50 16 40 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 41 H 0.41 9.25 8.46 -92.71 -0.78 8.47 16 42 H 0.35 10.33 9.06 -89.69 -0.81 9.52 16 43 H 0.34 12.29 8.58 -89.69 -0.77 11.52 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 46 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.01 0.36 7.75 -2.38 -0.02 0.34 16 48 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 50 H 0.14 1.73 6.74 -2.91 -0.02 1.71 16 Total: -1.00 -73.10 418.45 -2.08 -75.19 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -2.19 Total: 37.54 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 5.40 Total: -12.04 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.68 Total: -119.04 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.64 Total: -28.56 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.10 -2.08 -75.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563076316.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.087 kcal (2) G-P(sol) polarization free energy of solvation -73.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds