Wall clock time and date at job start Tue Mar 31 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46902 * 110.99670 * 2 1 4 4 C 1.46902 * 110.99890 * 123.95225 * 2 1 3 5 5 C 1.53002 * 109.46900 * 66.04834 * 4 2 1 6 6 C 1.53001 * 109.46889 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46884 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46873 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00056 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99823 * 179.97438 * 8 7 6 11 11 C 1.39581 * 119.99990 * 179.97438 * 10 8 7 12 12 N 1.32276 * 119.72745 * 0.26696 * 11 10 8 13 13 C 1.31949 * 121.69079 * 180.30946 * 12 11 10 14 14 C 1.38093 * 120.95747 * 359.70619 * 13 12 11 15 15 C 1.38775 * 119.35013 * 359.97438 * 14 13 12 16 16 C 1.38801 * 118.45054 * 359.97438 * 15 14 13 17 17 O 1.35973 * 120.50125 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99587 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08994 * 109.47197 * 296.04674 * 1 2 3 29 29 H 1.08998 * 109.47196 * 56.04512 * 1 2 3 30 30 H 1.08998 * 109.46893 * 176.04166 * 1 2 3 31 31 H 1.09000 * 109.46832 * 183.95213 * 3 2 1 32 32 H 1.08999 * 109.47347 * 303.95610 * 3 2 1 33 33 H 1.09001 * 109.47109 * 63.95492 * 3 2 1 34 34 H 1.08995 * 109.47345 * 306.04750 * 4 2 1 35 35 H 1.08996 * 109.46732 * 186.04507 * 4 2 1 36 36 H 1.09003 * 109.47034 * 60.00093 * 5 4 2 37 37 H 1.09002 * 109.47364 * 299.99809 * 5 4 2 38 38 H 1.08995 * 109.47213 * 60.00003 * 6 5 4 39 39 H 1.08996 * 109.46876 * 299.99753 * 6 5 4 40 40 H 1.08995 * 109.47518 * 59.99792 * 7 6 5 41 41 H 1.09002 * 109.47042 * 299.99777 * 7 6 5 42 42 H 0.97000 * 120.00150 * 359.97438 * 10 8 7 43 43 H 1.08000 * 119.52722 * 179.72569 * 13 12 11 44 44 H 1.07997 * 120.32692 * 179.97438 * 14 13 12 45 45 H 1.08002 * 120.77560 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.47490 * 59.99648 * 18 17 16 47 47 H 1.09001 * 109.47232 * 299.99002 * 18 17 16 48 48 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 49 49 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 50 50 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1549 7 6 1.8169 -4.5172 1.9873 8 6 2.3569 -5.3030 3.1543 9 8 2.9723 -4.7376 4.0332 10 7 2.1560 -6.6340 3.2212 11 6 2.6567 -7.3619 4.3019 12 7 3.3230 -6.7391 5.2599 13 6 3.8181 -7.3897 6.2956 14 6 3.6528 -8.7549 6.4220 15 6 2.9548 -9.4490 5.4439 16 6 2.4441 -8.7388 4.3662 17 8 1.7540 -9.3771 3.3837 18 6 1.5872 -10.7897 3.5208 19 6 0.7912 -11.3272 2.3298 20 6 0.6159 -12.8170 2.4740 21 1 1.0311 -13.3293 3.3294 22 6 -0.0736 -13.5262 1.5135 23 7 -0.5788 -12.9024 0.4717 24 14 -0.2916 -15.3727 1.6926 25 1 0.3654 -15.8297 2.9436 26 1 -1.7397 -15.6974 1.7464 27 1 0.3268 -16.0592 0.5299 28 1 -0.3633 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0797 -0.6611 1.1756 36 1 2.0659 -2.6213 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7464 -2.6619 3.0803 39 1 3.2646 -2.9355 2.1924 40 1 2.2512 -4.8956 1.0619 41 1 0.7327 -4.6225 1.9494 42 1 1.6635 -7.0861 2.5184 43 1 4.3602 -6.8467 7.0556 44 1 4.0627 -9.2772 7.2738 45 1 2.8115 -10.5168 5.5198 46 1 1.0487 -11.0042 4.4439 47 1 2.5653 -11.2698 3.5508 48 1 -0.1869 -10.8470 2.3001 49 1 1.3294 -11.1127 1.4065 50 1 -1.0642 -13.4013 -0.2038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566887488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:24 Heat of formation + Delta-G solvation = -42.239167 kcal Electronic energy + Delta-G solvation = -27661.638261 eV Core-core repulsion = 23689.185993 eV Total energy + Delta-G solvation = -3972.452267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86630 -39.33376 -38.09401 -37.75394 -34.97041 -34.45230 -33.48250 -31.67389 -30.77215 -29.98900 -28.87501 -27.94247 -25.69013 -25.36999 -23.63963 -22.84302 -22.07213 -21.05761 -20.89578 -20.08351 -18.31983 -17.48075 -17.12060 -16.38760 -16.17630 -15.81807 -15.79007 -15.67757 -15.40757 -15.04049 -14.84476 -14.57743 -14.49297 -14.03602 -13.82031 -13.63793 -12.88150 -12.84922 -12.78790 -12.66027 -12.42060 -12.24450 -12.06494 -12.02793 -11.93051 -11.53387 -11.42077 -11.22637 -11.05301 -11.02122 -10.72446 -10.68412 -10.67375 -10.20068 -10.06078 -9.78198 -9.40530 -9.21178 -9.00841 -8.72754 -8.53532 -7.65564 -6.19049 -4.23936 1.21262 1.45050 2.74945 2.91439 3.21070 3.28312 3.31302 3.52887 3.59778 4.01649 4.32986 4.38891 4.54893 4.68551 4.75799 4.80466 4.94548 4.95283 5.02237 5.06359 5.10760 5.17956 5.18179 5.23418 5.28886 5.33095 5.42971 5.46457 5.49607 5.52476 5.57971 5.61846 5.76348 5.85636 5.89168 6.03148 6.06466 6.15199 6.19025 6.36840 6.53400 6.63637 6.65370 6.67262 7.29337 7.34102 7.51600 7.63533 7.84589 8.08277 8.13449 8.38162 8.81520 9.41153 10.92411 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.002013 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.932794 B =13903.081560 C =16436.385089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.117 4.117 6 C -0.102 4.102 7 C -0.139 4.139 8 C 0.503 3.497 9 O -0.483 6.483 10 N -0.654 5.654 11 C 0.328 3.672 12 N -0.444 5.444 13 C 0.074 3.926 14 C -0.161 4.161 15 C -0.148 4.148 16 C 0.067 3.933 17 O -0.315 6.315 18 C 0.066 3.934 19 C 0.026 3.974 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.888 5.888 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.424 0.576 43 H 0.156 0.844 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 21.525 3.545 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.074 4.074 5 C -0.155 4.155 6 C -0.140 4.140 7 C -0.179 4.179 8 C 0.289 3.711 9 O -0.353 6.353 10 N -0.302 5.302 11 C 0.095 3.905 12 N -0.159 5.159 13 C -0.082 4.082 14 C -0.182 4.182 15 C -0.175 4.175 16 C 0.015 3.985 17 O -0.228 6.228 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.526 5.526 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.262 0.738 43 H 0.173 0.827 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.047 0.953 49 H 0.047 0.953 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.530 22.728 3.278 23.619 hybrid contribution -0.802 -2.109 0.656 2.350 sum 4.728 20.619 3.934 21.516 Atomic orbital electron populations 1.22453 0.87398 1.02625 1.00347 1.61999 1.08104 1.13755 1.43451 1.22382 1.00834 0.88843 1.00404 1.22166 1.00310 0.93884 0.91048 1.21622 1.01255 0.93734 0.98909 1.21286 1.02139 0.92149 0.98443 1.21692 1.02977 0.96064 0.97164 1.20949 0.80382 0.81501 0.88293 1.90779 1.37211 1.68566 1.38770 1.43578 1.55217 1.08354 1.23048 1.17858 0.97262 0.85135 0.90246 1.67625 1.09355 1.37812 1.01149 1.22409 0.98828 0.91600 0.95406 1.21887 1.00841 0.95507 0.99958 1.21612 1.00361 1.01287 0.94251 1.19614 0.96528 0.91207 0.91159 1.86099 1.68693 1.25450 1.42573 1.23396 1.00312 0.74506 1.02575 1.19133 0.95239 0.95413 0.91319 1.20988 1.35912 0.91735 1.07989 0.92281 1.24984 0.95208 0.98917 0.95025 1.69973 1.35915 1.36013 1.10745 0.86428 0.77984 0.84756 0.78207 1.19624 1.20801 1.20800 0.95696 0.91514 0.90850 0.91316 0.91406 0.95738 0.94735 0.90642 0.90826 0.91741 0.91247 0.90997 0.88415 0.88581 0.73803 0.82675 0.84824 0.83767 0.92962 0.92949 0.95331 0.95324 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.07 0.56 0.70 16 2 N -0.55 -4.44 5.02 -251.26 -1.26 -5.70 16 3 C 0.02 0.16 9.57 60.07 0.57 0.73 16 4 C 0.05 0.43 4.96 -3.82 -0.02 0.41 16 5 C -0.12 -0.91 5.14 -26.73 -0.14 -1.04 16 6 C -0.10 -0.92 4.50 -26.73 -0.12 -1.04 16 7 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 8 C 0.50 6.91 7.79 -10.99 -0.09 6.83 16 9 O -0.48 -8.28 14.24 5.56 0.08 -8.20 16 10 N -0.65 -9.42 5.39 -11.29 -0.06 -9.48 16 11 C 0.33 5.45 7.45 -154.43 -1.15 4.30 16 12 N -0.44 -7.47 7.88 -12.22 -0.10 -7.57 16 13 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 14 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 15 C -0.15 -2.17 9.14 -39.17 -0.36 -2.53 16 16 C 0.07 1.11 6.72 -38.91 -0.26 0.85 16 17 O -0.32 -5.78 9.39 -19.66 -0.18 -5.97 16 18 C 0.07 1.30 4.70 37.16 0.17 1.47 16 19 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 20 C -0.53 -14.06 9.11 -34.44 -0.31 -14.37 16 21 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 24 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.50 6.47 -51.93 -0.34 0.16 16 31 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.47 6.55 -51.93 -0.34 0.13 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.42 5.39 8.04 -40.82 -0.33 5.06 16 43 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 46 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 47 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -32.50 411.04 -10.18 -42.69 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -8.44 Total: 1.84 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.14 Total: -4.70 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.68 Total: -47.44 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.11 Total: -14.17 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.50 -10.18 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566887488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.446 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds