Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46902 * 110.99670 * 2 1 4 4 C 1.46902 * 110.99890 * 123.95225 * 2 1 3 5 5 C 1.53002 * 109.46900 * 66.04834 * 4 2 1 6 6 C 1.53001 * 109.46889 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46884 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46873 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00056 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99823 * 179.97438 * 8 7 6 11 11 C 1.39581 * 119.99990 * 179.97438 * 10 8 7 12 12 N 1.32276 * 119.72745 * 0.26696 * 11 10 8 13 13 C 1.31949 * 121.69079 * 180.30946 * 12 11 10 14 14 C 1.38093 * 120.95747 * 359.70619 * 13 12 11 15 15 C 1.38775 * 119.35013 * 359.97438 * 14 13 12 16 16 C 1.38801 * 118.45054 * 359.97438 * 15 14 13 17 17 O 1.35973 * 120.50125 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99587 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08994 * 109.47197 * 296.04674 * 1 2 3 29 29 H 1.08998 * 109.47196 * 56.04512 * 1 2 3 30 30 H 1.08998 * 109.46893 * 176.04166 * 1 2 3 31 31 H 1.09000 * 109.46832 * 183.95213 * 3 2 1 32 32 H 1.08999 * 109.47347 * 303.95610 * 3 2 1 33 33 H 1.09001 * 109.47109 * 63.95492 * 3 2 1 34 34 H 1.08995 * 109.47345 * 306.04750 * 4 2 1 35 35 H 1.08996 * 109.46732 * 186.04507 * 4 2 1 36 36 H 1.09003 * 109.47034 * 60.00093 * 5 4 2 37 37 H 1.09002 * 109.47364 * 299.99809 * 5 4 2 38 38 H 1.08995 * 109.47213 * 60.00003 * 6 5 4 39 39 H 1.08996 * 109.46876 * 299.99753 * 6 5 4 40 40 H 1.08995 * 109.47518 * 59.99792 * 7 6 5 41 41 H 1.09002 * 109.47042 * 299.99777 * 7 6 5 42 42 H 0.97000 * 120.00150 * 359.97438 * 10 8 7 43 43 H 1.08000 * 119.52722 * 179.72569 * 13 12 11 44 44 H 1.07997 * 120.32692 * 179.97438 * 14 13 12 45 45 H 1.08002 * 120.77560 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.47490 * 59.99648 * 18 17 16 47 47 H 1.09001 * 109.47232 * 299.99002 * 18 17 16 48 48 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 49 49 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 50 50 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1549 7 6 1.8169 -4.5172 1.9873 8 6 2.3569 -5.3030 3.1543 9 8 2.9723 -4.7376 4.0332 10 7 2.1560 -6.6340 3.2212 11 6 2.6567 -7.3619 4.3019 12 7 3.3230 -6.7391 5.2599 13 6 3.8181 -7.3897 6.2956 14 6 3.6528 -8.7549 6.4220 15 6 2.9548 -9.4490 5.4439 16 6 2.4441 -8.7388 4.3662 17 8 1.7540 -9.3771 3.3837 18 6 1.5872 -10.7897 3.5208 19 6 0.7912 -11.3272 2.3298 20 6 0.6159 -12.8170 2.4740 21 1 1.0311 -13.3293 3.3294 22 6 -0.0736 -13.5262 1.5135 23 7 -0.5788 -12.9024 0.4717 24 14 -0.2916 -15.3727 1.6926 25 1 0.3654 -15.8297 2.9436 26 1 -1.7397 -15.6974 1.7464 27 1 0.3268 -16.0592 0.5299 28 1 -0.3633 0.4512 0.9232 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8724 0.9233 34 1 1.5612 -0.3873 2.0628 35 1 3.0797 -0.6611 1.1756 36 1 2.0659 -2.6213 0.0451 37 1 0.5472 -2.3475 0.9323 38 1 1.7464 -2.6619 3.0803 39 1 3.2646 -2.9355 2.1924 40 1 2.2512 -4.8956 1.0619 41 1 0.7327 -4.6225 1.9494 42 1 1.6635 -7.0861 2.5184 43 1 4.3602 -6.8467 7.0556 44 1 4.0627 -9.2772 7.2738 45 1 2.8115 -10.5168 5.5198 46 1 1.0487 -11.0042 4.4439 47 1 2.5653 -11.2698 3.5508 48 1 -0.1869 -10.8470 2.3001 49 1 1.3294 -11.1127 1.4065 50 1 -1.0642 -13.4013 -0.2038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566887488.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = -62.462737 kcal Electronic energy + Delta-G solvation = -27662.515221 eV Core-core repulsion = 23689.185993 eV Total energy + Delta-G solvation = -3973.329227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02895 -40.47430 -39.11223 -38.67016 -36.02085 -35.45635 -35.29233 -32.91214 -32.32447 -31.05642 -29.94976 -28.47403 -27.16917 -26.42090 -24.88258 -23.99191 -23.06468 -22.42367 -21.65584 -21.15883 -19.58795 -18.83412 -18.22707 -18.01387 -17.28455 -16.98399 -16.95753 -16.45548 -16.35773 -16.30275 -15.91161 -15.65793 -15.42353 -15.20133 -14.88819 -14.72407 -14.35248 -14.15254 -13.75065 -13.53912 -13.45458 -13.29599 -13.23517 -12.87795 -12.78176 -12.77155 -12.59962 -12.43554 -12.24648 -12.08597 -11.89968 -11.84802 -11.70458 -11.62364 -11.41383 -11.39138 -11.27396 -10.61111 -10.40328 -10.15601 -9.31869 -8.84993 -8.25439 -6.37802 0.09353 0.28759 1.42620 1.43150 1.55864 1.69003 1.88172 2.11665 2.44698 2.87921 3.00725 3.09951 3.41089 3.70532 3.85001 3.85989 3.99423 4.06276 4.15000 4.25689 4.29570 4.30054 4.33638 4.43245 4.46785 4.49269 4.54423 4.68077 4.73852 4.74917 4.76115 4.80205 4.91933 4.97422 5.00077 5.01767 5.10478 5.14327 5.28851 5.31850 5.33795 5.45447 5.51154 5.54028 5.74173 6.08334 6.08536 6.09888 6.23946 6.33872 6.77271 6.95887 7.29787 7.32276 8.87327 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.002013 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.932794 B =13903.081560 C =16436.385089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.054 3.946 5 C -0.107 4.107 6 C -0.094 4.094 7 C -0.131 4.131 8 C 0.499 3.501 9 O -0.521 6.521 10 N -0.655 5.655 11 C 0.309 3.691 12 N -0.474 5.474 13 C 0.072 3.928 14 C -0.146 4.146 15 C -0.150 4.150 16 C 0.040 3.960 17 O -0.328 6.328 18 C 0.084 3.916 19 C 0.029 3.971 20 C -0.544 4.544 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.970 3.030 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.429 0.571 43 H 0.185 0.815 44 H 0.175 0.825 45 H 0.156 0.844 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.002 0.998 49 H 0.002 0.998 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 20.818 4.681 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.287 5.287 3 C -0.126 4.126 4 C -0.074 4.074 5 C -0.145 4.145 6 C -0.132 4.132 7 C -0.170 4.170 8 C 0.288 3.712 9 O -0.394 6.394 10 N -0.303 5.303 11 C 0.077 3.923 12 N -0.190 5.190 13 C -0.085 4.085 14 C -0.167 4.167 15 C -0.176 4.176 16 C -0.011 4.011 17 O -0.241 6.241 18 C 0.009 3.991 19 C -0.008 4.008 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.795 3.205 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.267 0.733 43 H 0.202 0.798 44 H 0.192 0.808 45 H 0.174 0.826 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.021 0.979 49 H 0.021 0.979 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.024 22.030 4.411 23.261 hybrid contribution -0.891 -1.800 0.383 2.045 sum 5.133 20.230 4.794 21.415 Atomic orbital electron populations 1.22486 0.86843 1.02891 1.00683 1.62023 1.08765 1.14524 1.43350 1.22423 1.01033 0.88278 1.00822 1.22138 1.00212 0.94005 0.91006 1.21519 1.01547 0.93370 0.98079 1.21194 1.01321 0.92176 0.98553 1.21751 1.04072 0.95354 0.95860 1.21719 0.79487 0.81232 0.88805 1.90747 1.39058 1.69126 1.40494 1.43719 1.55058 1.08708 1.22823 1.18096 0.97803 0.85430 0.90947 1.67687 1.10255 1.38874 1.02152 1.23053 0.97866 0.92563 0.94978 1.22269 0.99181 0.95024 1.00212 1.21909 0.99874 1.01943 0.93905 1.19769 0.98003 0.91431 0.91857 1.86025 1.69799 1.24486 1.43785 1.22953 1.00088 0.75559 1.00466 1.18955 0.94352 0.95054 0.92447 1.21435 1.35649 0.92852 1.08279 0.91134 1.25955 0.94876 1.04009 0.94654 1.70103 1.36872 1.38056 1.11728 0.85314 0.77974 0.78616 0.78630 1.18174 1.20476 1.20486 0.95735 0.90733 0.90716 0.91093 0.90550 0.95666 0.95156 0.90835 0.90696 0.91029 0.92440 0.92200 0.86509 0.86570 0.73262 0.79771 0.80767 0.82616 0.91862 0.91857 0.97912 0.97917 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 127.69 1.19 1.44 16 2 N -0.56 -8.64 5.02 -948.83 -4.76 -13.40 16 3 C 0.02 0.28 9.57 127.69 1.22 1.50 16 4 C 0.05 0.84 4.96 86.30 0.43 1.27 16 5 C -0.11 -1.57 5.14 30.60 0.16 -1.42 16 6 C -0.09 -1.69 4.50 30.60 0.14 -1.55 16 7 C -0.13 -2.36 5.70 29.85 0.17 -2.19 16 8 C 0.50 13.91 7.79 87.66 0.68 14.59 16 9 O -0.52 -18.27 14.24 -3.02 -0.04 -18.31 16 10 N -0.65 -19.21 5.39 -308.03 -1.66 -20.87 16 11 C 0.31 10.32 7.45 132.98 0.99 11.31 16 12 N -0.47 -15.73 7.88 -192.58 -1.52 -17.24 16 13 C 0.07 1.83 11.17 84.64 0.95 2.77 16 14 C -0.15 -3.23 10.10 22.36 0.23 -3.00 16 15 C -0.15 -4.09 9.14 22.53 0.21 -3.89 16 16 C 0.04 1.32 6.72 22.70 0.15 1.47 16 17 O -0.33 -12.12 9.39 -93.25 -0.88 -13.00 16 18 C 0.08 3.26 4.70 71.98 0.34 3.60 16 19 C 0.03 1.46 5.34 29.85 0.16 1.62 16 20 C -0.54 -28.97 9.11 25.60 0.23 -28.74 16 21 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 22 C 0.00 0.21 5.46 84.65 0.46 0.67 16 23 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 24 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 28 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.07 0.93 6.47 -2.39 -0.02 0.91 16 31 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 35 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 0.96 6.55 -2.39 -0.02 0.95 16 38 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 39 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.43 11.23 8.04 -92.71 -0.75 10.48 16 43 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 44 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.16 3.83 6.44 -2.91 -0.02 3.81 16 46 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 47 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -71.29 411.04 1.33 -69.96 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.18 Total: 23.28 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 7.70 Total: -0.54 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -7.65 Total: -105.28 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.92 Total: -31.31 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -71.29 1.33 -69.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566887488.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.498 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds