Wall clock time and date at job start Tue Mar 31 2020 18:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47039 * 179.97438 * 19 18 17 21 21 C 1.38383 * 119.93028 * 269.72893 * 20 19 18 22 22 C 1.38338 * 120.29214 * 179.72521 * 21 20 19 23 23 C 1.37981 * 120.14563 * 0.55252 * 22 21 20 24 24 C 1.39557 * 119.84899 * 359.71829 * 23 22 21 25 25 C 1.47854 * 120.14074 * 180.02562 * 24 23 22 26 26 N 1.34778 * 119.99796 * 359.97438 * 25 24 23 27 27 O 1.21547 * 120.00083 * 179.97438 * 25 24 23 28 28 C 1.37935 * 119.92487 * 90.00171 * 20 19 18 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 44 44 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 45 45 H 1.08003 * 119.84763 * 359.97438 * 21 20 19 46 46 H 1.08000 * 119.92390 * 180.25141 * 22 21 20 47 47 H 1.07997 * 120.07625 * 179.75109 * 23 22 21 48 48 H 0.97000 * 120.00223 * 0.02562 * 26 25 24 49 49 H 0.97004 * 119.99766 * 179.97438 * 26 25 24 50 50 H 1.07996 * 120.07972 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 6 8.0200 -4.1471 -3.7864 21 6 7.9206 -5.5259 -3.8494 22 6 8.4562 -6.2157 -4.9223 23 6 9.1036 -5.5330 -5.9316 24 6 9.2122 -4.1430 -5.8713 25 6 9.9040 -3.4049 -6.9496 26 7 10.4318 -4.0746 -7.9933 27 8 9.9967 -2.1942 -6.8947 28 6 8.6645 -3.4524 -4.7887 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 8.0083 -2.4998 -2.4293 44 1 7.4512 -4.0400 -1.7326 45 1 7.4192 -6.0653 -3.0595 46 1 8.3717 -7.2915 -4.9675 47 1 9.5248 -6.0731 -6.7666 48 1 10.3575 -5.0407 -8.0373 49 1 10.8853 -3.5903 -8.7010 50 1 8.7449 -2.3768 -4.7364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567160760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:55 Heat of formation + Delta-G solvation = -65.855615 kcal Electronic energy + Delta-G solvation = -27526.469510 eV Core-core repulsion = 23552.993157 eV Total energy + Delta-G solvation = -3973.476353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55268 -38.86702 -38.20540 -36.28581 -35.23211 -34.31764 -32.89115 -32.42741 -31.45282 -30.09447 -28.14444 -27.21197 -25.36245 -24.57520 -23.57234 -22.72766 -21.84673 -21.42817 -20.47880 -20.00561 -18.47163 -17.18305 -16.65207 -16.46943 -16.21849 -15.98995 -15.51956 -15.32597 -15.14559 -14.92676 -14.71532 -14.39444 -14.33113 -14.10674 -13.76334 -13.51814 -13.35328 -13.04570 -12.94897 -12.38100 -12.33310 -12.03391 -11.90513 -11.71881 -11.45579 -11.36205 -11.16737 -11.08911 -10.90668 -10.67002 -10.56570 -10.46947 -10.33190 -10.17598 -9.71709 -9.61519 -9.39710 -9.18803 -9.07217 -8.43377 -8.35780 -7.16013 -5.95805 -3.96356 0.41346 0.90643 2.45309 3.03203 3.37791 3.41414 3.43253 3.46695 3.94415 4.30403 4.34894 4.43827 4.49336 4.69046 4.78894 4.82703 4.89838 4.98454 5.01621 5.10713 5.27586 5.32156 5.37321 5.39297 5.45993 5.56858 5.61318 5.70126 5.77014 5.83650 5.84586 5.88713 5.91663 6.07808 6.11172 6.19151 6.29881 6.38283 6.45750 6.58023 6.74227 6.84894 6.95947 7.33587 7.36934 7.40021 7.80531 7.85830 8.09445 8.16265 8.26322 8.61388 9.10753 9.67252 11.15281 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.001707 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.289455 B =16398.219676 C =17278.140380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.112 0.888 15 O -0.541 6.541 16 C 0.031 3.969 17 N -0.683 5.683 18 C 0.066 3.934 19 C -0.082 4.082 20 C -0.083 4.083 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.093 4.093 24 C -0.139 4.139 25 C 0.562 3.438 26 N -0.853 5.853 27 O -0.535 6.535 28 C -0.053 4.053 29 H 0.011 0.989 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.032 0.968 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.358 0.642 38 H 0.027 0.973 39 H 0.078 0.922 40 H 0.348 0.652 41 H 0.027 0.973 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.400 0.600 49 H 0.405 0.595 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.288 -25.569 -16.161 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.130 0.870 15 O -0.343 6.343 16 C -0.099 4.099 17 N -0.315 5.315 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.083 4.083 21 C -0.107 4.107 22 C -0.144 4.144 23 C -0.112 4.112 24 C -0.142 4.142 25 C 0.348 3.652 26 N -0.417 5.417 27 O -0.412 6.412 28 C -0.072 4.072 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.203 0.797 38 H 0.045 0.955 39 H 0.097 0.903 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.230 0.770 49 H 0.236 0.764 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.121 -23.729 -15.532 31.248 hybrid contribution -1.108 -0.694 -0.637 1.454 sum 12.013 -24.423 -16.168 31.658 Atomic orbital electron populations 1.22191 0.88928 0.98485 1.01146 1.62046 1.06440 1.17901 1.39119 1.19791 0.95579 0.81387 0.96524 1.21151 1.34652 0.96811 1.01678 0.91927 1.24995 0.95383 0.97396 0.96959 1.69960 1.38480 1.11442 1.34004 0.86493 0.78815 0.78318 0.83736 1.20610 1.21412 1.19939 1.22676 0.95928 0.98027 0.93764 1.21993 0.95175 0.93598 0.83633 0.87030 1.86706 1.73804 1.34325 1.39491 1.22668 0.88253 0.98930 1.00085 1.60287 1.18369 1.47577 1.05313 1.21917 0.93406 0.96266 0.94796 1.20619 0.95975 1.00521 0.94839 1.19900 0.98217 0.93732 0.96495 1.21334 0.97654 0.93772 0.97950 1.21083 0.98847 1.00205 0.94276 1.21240 0.98318 0.92880 0.98731 1.19868 1.03664 0.93798 0.96885 1.18334 0.77891 0.87022 0.81917 1.43756 1.60877 1.11791 1.25259 1.90851 1.58538 1.13812 1.78042 1.21261 0.93615 1.00969 0.91312 0.97055 0.94025 0.90948 0.94981 0.99369 0.92984 0.92385 0.94930 0.79747 0.95465 0.90331 0.83290 0.95478 0.90904 0.89399 0.90613 0.85453 0.85328 0.85793 0.77040 0.76378 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.07 0.56 1.37 16 2 N -0.53 -11.62 4.59 -244.37 -1.12 -12.75 16 3 C 0.19 5.13 4.55 -4.98 -0.02 5.11 16 4 C -0.50 -14.61 8.58 -34.44 -0.30 -14.90 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.43 16 13 C 0.12 1.90 3.31 -26.73 -0.09 1.81 16 14 H 0.11 2.26 6.73 -51.93 -0.35 1.91 16 15 O -0.54 -8.80 12.58 -35.23 -0.44 -9.24 16 16 C 0.03 0.39 5.39 -3.82 -0.02 0.37 16 17 N -0.68 -8.28 6.50 -113.78 -0.74 -9.02 16 18 C 0.07 0.65 5.67 -3.83 -0.02 0.63 16 19 C -0.08 -0.71 5.60 -27.88 -0.16 -0.87 16 20 C -0.08 -0.69 5.13 -104.68 -0.54 -1.23 16 21 C -0.09 -0.60 9.69 -39.49 -0.38 -0.98 16 22 C -0.13 -0.71 10.03 -39.64 -0.40 -1.10 16 23 C -0.09 -0.53 9.54 -39.18 -0.37 -0.91 16 24 C -0.14 -1.18 5.87 -104.96 -0.62 -1.80 16 25 C 0.56 5.29 8.05 -12.32 -0.10 5.19 16 26 N -0.85 -4.11 8.82 30.53 0.27 -3.84 16 27 O -0.54 -7.44 17.18 5.32 0.09 -7.35 16 28 C -0.05 -0.51 9.24 -39.19 -0.36 -0.87 16 29 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.07 1.52 7.01 -51.93 -0.36 1.16 16 32 H 0.03 0.92 6.60 -51.93 -0.34 0.57 16 33 H -0.01 -0.33 8.07 -51.92 -0.42 -0.75 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 0.86 7.75 -51.93 -0.40 0.45 16 36 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 37 H 0.36 4.31 9.05 45.56 0.41 4.72 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.35 4.04 8.12 -39.29 -0.32 3.72 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 45 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 46 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 47 H 0.12 0.30 6.40 -52.49 -0.34 -0.03 16 48 H 0.40 0.69 6.86 -40.82 -0.28 0.41 16 49 H 0.41 1.53 8.93 -40.82 -0.36 1.16 16 50 H 0.14 1.48 7.65 -52.49 -0.40 1.08 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -36.09 411.27 -10.25 -46.34 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.29 Total: 5.35 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.93 Total: -6.27 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.85 Total: -52.27 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.35 Total: -16.59 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.09 -10.25 -46.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567160760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.517 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds