Wall clock time and date at job start Tue Mar 31 2020 18:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00194 * 2 1 4 4 C 1.50700 * 109.47194 * 293.95472 * 3 2 1 5 5 H 1.08003 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00012 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00206 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00082 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47323 * 89.99629 * 8 6 4 10 10 H 1.48501 * 109.46988 * 209.99765 * 8 6 4 11 11 H 1.48499 * 109.46924 * 329.99303 * 8 6 4 12 12 C 1.46893 * 111.00237 * 123.95687 * 2 1 3 13 13 C 1.53000 * 109.47397 * 164.00720 * 12 2 1 14 14 H 1.09003 * 109.46989 * 58.50996 * 13 12 2 15 15 O 1.42898 * 109.46959 * 298.50724 * 13 12 2 16 16 C 1.52999 * 109.47181 * 178.50810 * 13 12 2 17 17 N 1.46904 * 109.47256 * 185.00040 * 16 13 12 18 18 C 1.46894 * 111.00033 * 180.02562 * 17 16 13 19 19 C 1.53002 * 109.46814 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.46909 * 180.02562 * 19 18 17 21 21 C 1.38386 * 119.92374 * 269.72471 * 20 19 18 22 22 C 1.38338 * 120.29034 * 179.72459 * 21 20 19 23 23 C 1.37982 * 120.14149 * 0.54982 * 22 21 20 24 24 C 1.39553 * 119.85563 * 359.72507 * 23 22 21 25 25 C 1.47846 * 120.14537 * 180.02562 * 24 23 22 26 26 N 1.34774 * 119.99773 * 359.97438 * 25 24 23 27 27 O 1.21555 * 119.99999 * 179.97438 * 25 24 23 28 28 C 1.37928 * 119.92847 * 90.00088 * 20 19 18 29 29 H 1.09001 * 109.46689 * 301.53086 * 1 2 3 30 30 H 1.09003 * 109.47372 * 61.52701 * 1 2 3 31 31 H 1.08994 * 109.47183 * 181.53124 * 1 2 3 32 32 H 1.08995 * 109.47411 * 53.95384 * 3 2 1 33 33 H 1.09005 * 109.47225 * 173.95991 * 3 2 1 34 34 H 0.96997 * 120.00432 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47474 * 44.00447 * 12 2 1 36 36 H 1.09003 * 109.47152 * 284.00659 * 12 2 1 37 37 H 0.96701 * 114.00526 * 299.99926 * 15 13 12 38 38 H 1.09003 * 109.47479 * 64.99870 * 16 13 12 39 39 H 1.09000 * 109.47043 * 305.00128 * 16 13 12 40 40 H 1.00898 * 110.99579 * 56.04487 * 17 16 13 41 41 H 1.09002 * 109.47085 * 299.99743 * 18 17 16 42 42 H 1.09001 * 109.47299 * 59.99898 * 18 17 16 43 43 H 1.08996 * 109.47394 * 299.99442 * 19 18 17 44 44 H 1.09001 * 109.47312 * 59.99855 * 19 18 17 45 45 H 1.08001 * 119.85132 * 359.97438 * 21 20 19 46 46 H 1.07994 * 119.92783 * 180.25478 * 22 21 20 47 47 H 1.08007 * 120.07106 * 179.74624 * 23 22 21 48 48 H 0.97002 * 120.00409 * 0.02562 * 26 25 24 49 49 H 0.97006 * 119.99835 * 179.97438 * 26 25 24 50 50 H 1.08000 * 120.07485 * 359.97093 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0485 6 6 2.0269 3.3494 -1.5284 7 7 1.7136 3.9394 -2.6614 8 14 3.0001 4.2761 -0.2309 9 1 4.4524 4.0635 -0.4558 10 1 2.6919 5.7259 -0.3226 11 1 2.6294 3.7755 1.1171 12 6 1.9955 -0.7660 1.1375 13 6 3.4728 -1.0840 0.8982 14 1 4.0282 -0.1550 0.7696 15 8 3.6033 -1.8839 -0.2787 16 6 4.0308 -1.8496 2.0997 17 7 5.4754 -2.0503 1.9245 18 6 6.0466 -2.7844 3.0615 19 6 7.5493 -2.9731 2.8436 20 6 8.1352 -3.7267 4.0097 21 6 8.6208 -3.0345 5.1052 22 6 9.1550 -3.7189 6.1823 23 6 9.2172 -5.0972 6.1656 24 6 8.7345 -5.8011 5.0615 25 6 8.7974 -7.2780 5.0370 26 7 9.3223 -7.9474 6.0824 27 8 8.3757 -7.8885 4.0742 28 6 8.1914 -5.1046 3.9804 29 1 -0.3633 0.5374 0.8760 30 1 -0.3634 0.4899 -0.9034 31 1 -0.3633 -1.0272 0.0275 32 1 1.5612 1.9274 0.8309 33 1 3.0798 1.3444 0.1081 34 1 1.9882 4.8554 -2.8234 35 1 1.4356 -1.6957 1.2398 36 1 1.8935 -0.1782 2.0497 37 1 3.1332 -2.7279 -0.2348 38 1 3.5359 -2.8179 2.1753 39 1 3.8512 -1.2778 3.0101 40 1 5.9488 -1.1699 1.7875 41 1 5.8810 -2.2194 3.9788 42 1 5.5657 -3.7591 3.1432 43 1 7.7153 -3.5378 1.9262 44 1 8.0299 -1.9982 2.7621 45 1 8.5788 -1.9555 5.1211 46 1 9.5285 -3.1730 7.0359 47 1 9.6383 -5.6302 7.0053 48 1 9.6585 -7.4603 6.8509 49 1 9.3633 -8.9165 6.0665 50 1 7.8158 -5.6434 3.1231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567160761.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:58 Heat of formation + Delta-G solvation = -59.748849 kcal Electronic energy + Delta-G solvation = -27616.397772 eV Core-core repulsion = 23643.186228 eV Total energy + Delta-G solvation = -3973.211544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60061 -38.91436 -38.25679 -36.41138 -35.28177 -34.37558 -32.96950 -32.40411 -31.49653 -30.15275 -28.35589 -27.77167 -25.42581 -24.62051 -23.49741 -22.68939 -21.94140 -21.51796 -20.52374 -19.91843 -18.51812 -17.23728 -16.92058 -16.56441 -16.50876 -15.79873 -15.61617 -15.34822 -15.18432 -15.06544 -14.75797 -14.58614 -14.23240 -14.14436 -13.92701 -13.65816 -13.28840 -13.05673 -12.99887 -12.76767 -12.37014 -12.23279 -11.98985 -11.82139 -11.58318 -11.52555 -11.26936 -11.21226 -11.06098 -10.75538 -10.52374 -10.49884 -10.22703 -10.16854 -9.87374 -9.55846 -9.43987 -9.24456 -9.15546 -8.53645 -8.49591 -7.31741 -6.01698 -3.98220 0.36850 0.86273 2.40359 2.98360 3.28672 3.35559 3.36072 3.36724 3.85955 4.25886 4.30305 4.39502 4.43609 4.61397 4.70331 4.77733 4.83133 4.89328 4.97980 5.05333 5.18466 5.23670 5.27545 5.31342 5.38929 5.50505 5.55484 5.61655 5.62642 5.67838 5.79200 5.82526 5.87547 5.93224 6.05106 6.14319 6.24825 6.25535 6.38018 6.41297 6.67417 6.79901 6.84508 6.87778 6.98897 7.24760 7.62243 7.75170 7.90520 8.05943 8.21970 8.69811 9.07893 9.59875 11.11697 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.001771 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.807494 B =15803.421800 C =16672.844420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.162 3.838 4 C -0.505 4.505 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.270 1.270 12 C 0.023 3.977 13 C 0.117 3.883 14 H 0.097 0.903 15 O -0.529 6.529 16 C 0.028 3.972 17 N -0.680 5.680 18 C 0.065 3.935 19 C -0.082 4.082 20 C -0.083 4.083 21 C -0.089 4.089 22 C -0.126 4.126 23 C -0.093 4.093 24 C -0.140 4.140 25 C 0.563 3.437 26 N -0.852 5.852 27 O -0.537 6.537 28 C -0.053 4.053 29 H 0.010 0.990 30 H 0.079 0.921 31 H 0.046 0.954 32 H -0.015 1.015 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.363 0.637 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.343 0.657 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.400 0.600 49 H 0.405 0.595 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.112 -19.604 23.838 34.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.544 4.544 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.107 4.107 13 C 0.057 3.943 14 H 0.115 0.885 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.311 5.311 18 C -0.064 4.064 19 C -0.119 4.119 20 C -0.084 4.084 21 C -0.107 4.107 22 C -0.144 4.144 23 C -0.111 4.111 24 C -0.143 4.143 25 C 0.349 3.651 26 N -0.416 5.416 27 O -0.414 6.414 28 C -0.072 4.072 29 H 0.028 0.972 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.208 0.792 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.161 0.839 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.230 0.770 49 H 0.236 0.764 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.245 -19.936 22.015 33.853 hybrid contribution 0.138 1.155 2.933 3.155 sum 16.383 -18.781 24.948 35.264 Atomic orbital electron populations 1.22233 0.88147 0.99283 1.01268 1.61846 1.06984 1.16366 1.39207 1.20221 0.94920 0.84094 0.97187 1.21032 1.35392 0.97065 1.00862 0.90095 1.24898 0.95852 0.97377 0.95262 1.69893 1.47017 1.13240 1.23830 0.86888 0.81034 0.79315 0.82665 1.20078 1.21214 1.19487 1.22749 0.96173 0.98505 0.93308 1.21857 0.94347 0.94024 0.84116 0.88512 1.86694 1.75451 1.33218 1.37802 1.22725 0.88873 1.00604 0.97957 1.60327 1.03186 1.26225 1.41339 1.21924 0.93706 0.99123 0.91660 1.20616 0.94855 1.00455 0.96008 1.19897 0.98820 0.93393 0.96297 1.21352 0.96148 1.00409 0.92768 1.21094 1.00387 0.93958 0.98920 1.21247 0.98320 0.94692 0.96870 1.19862 1.04979 0.92564 0.96873 1.18326 0.76803 0.87618 0.82343 1.43758 1.65415 1.11351 1.21125 1.90845 1.47236 1.69780 1.33536 1.21237 0.95029 0.93369 0.97526 0.97155 0.90198 0.93509 0.99740 0.95824 0.92718 0.91618 0.95359 0.79187 0.90777 0.94764 0.83852 0.95422 0.90898 0.89403 0.90597 0.85426 0.85291 0.85770 0.77008 0.76370 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.32 60.06 0.56 1.31 16 2 N -0.52 -10.97 4.60 -244.37 -1.12 -12.10 16 3 C 0.16 3.98 3.64 -4.98 -0.02 3.96 16 4 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 5 H 0.08 2.56 7.34 -52.48 -0.39 2.18 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 8 Si 0.87 21.65 27.47 -169.99 -4.67 16.99 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 12 C 0.02 0.37 4.63 -3.83 -0.02 0.35 16 13 C 0.12 1.81 3.17 -26.73 -0.08 1.72 16 14 H 0.10 1.72 6.55 -51.93 -0.34 1.38 16 15 O -0.53 -8.97 13.18 -35.23 -0.46 -9.43 16 16 C 0.03 0.34 5.32 -3.82 -0.02 0.32 16 17 N -0.68 -7.71 6.45 -113.78 -0.73 -8.44 16 18 C 0.07 0.60 5.67 -3.83 -0.02 0.58 16 19 C -0.08 -0.67 5.60 -27.88 -0.16 -0.82 16 20 C -0.08 -0.67 5.13 -104.68 -0.54 -1.20 16 21 C -0.09 -0.59 9.69 -39.49 -0.38 -0.97 16 22 C -0.13 -0.69 10.03 -39.64 -0.40 -1.09 16 23 C -0.09 -0.50 9.54 -39.18 -0.37 -0.88 16 24 C -0.14 -1.12 5.87 -104.97 -0.62 -1.74 16 25 C 0.56 4.96 8.05 -12.33 -0.10 4.86 16 26 N -0.85 -3.68 8.82 30.53 0.27 -3.41 16 27 O -0.54 -7.05 17.18 5.32 0.09 -6.95 16 28 C -0.05 -0.48 9.24 -39.19 -0.36 -0.84 16 29 H 0.01 0.19 8.13 -51.93 -0.42 -0.24 16 30 H 0.08 1.71 6.90 -51.93 -0.36 1.36 16 31 H 0.05 0.76 7.97 -51.93 -0.41 0.34 16 32 H -0.01 -0.37 7.17 -51.93 -0.37 -0.74 16 33 H 0.02 0.58 5.81 -51.93 -0.30 0.28 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 36 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 37 H 0.36 4.81 9.05 45.56 0.41 5.22 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.34 3.84 8.73 -39.29 -0.34 3.50 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 47 H 0.12 0.27 6.41 -52.48 -0.34 -0.07 16 48 H 0.40 0.53 6.86 -40.82 -0.28 0.25 16 49 H 0.41 1.31 8.93 -40.82 -0.36 0.94 16 50 H 0.14 1.36 7.65 -52.49 -0.40 0.96 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -36.52 408.47 -9.92 -46.44 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.28 Total: 5.46 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.94 Total: -7.51 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.82 Total: -51.14 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.37 Total: -16.38 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.52 -9.92 -46.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567160761.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.310 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds