Wall clock time and date at job start Tue Mar 31 2020 18:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00493 * 2 1 4 4 O 1.21558 * 119.99794 * 0.02562 * 3 2 1 5 5 C 1.47842 * 120.00496 * 180.02562 * 3 2 1 6 6 C 1.39574 * 120.14831 * 180.02562 * 5 3 2 7 7 C 1.37952 * 119.85498 * 180.02562 * 6 5 3 8 8 C 1.38358 * 120.14817 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.85835 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46547 * 90.00233 * 9 8 7 11 11 C 1.46904 * 110.99534 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47085 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47253 * 305.00344 * 12 11 10 14 14 O 1.42900 * 109.47194 * 64.99751 * 12 11 10 15 15 C 1.52998 * 109.47107 * 184.99848 * 12 11 10 16 16 N 1.46899 * 109.46858 * 175.04575 * 15 12 11 17 17 C 1.46903 * 110.99991 * 163.94840 * 16 15 12 18 18 C 1.46902 * 111.00138 * 287.89426 * 16 15 12 19 19 C 1.50702 * 109.47206 * 170.00004 * 18 16 15 20 20 H 1.07990 * 119.99891 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99588 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00136 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99737 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47118 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.46938 * 120.00335 * 23 21 19 26 26 H 1.48505 * 109.46930 * 240.00323 * 23 21 19 27 27 C 1.38356 * 120.28822 * 0.23955 * 8 7 6 28 28 C 1.37962 * 120.14776 * 359.48632 * 27 8 7 29 29 H 1.08996 * 109.47663 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47041 * 300.00142 * 1 2 3 31 31 H 1.09000 * 109.46834 * 59.99570 * 1 2 3 32 32 H 0.97004 * 119.99946 * 180.02562 * 2 1 3 33 33 H 1.08007 * 120.07187 * 359.97438 * 6 5 3 34 34 H 1.08007 * 119.92746 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46893 * 330.00365 * 9 8 7 36 36 H 1.08997 * 109.46991 * 210.00249 * 9 8 7 37 37 H 1.00901 * 111.00190 * 56.04996 * 10 9 8 38 38 H 1.08996 * 109.47355 * 59.99871 * 11 10 9 39 39 H 1.09001 * 109.46826 * 299.99768 * 11 10 9 40 40 H 0.96698 * 114.00266 * 60.00042 * 14 12 11 41 41 H 1.08997 * 109.47560 * 55.04389 * 15 12 11 42 42 H 1.08998 * 109.46907 * 295.04026 * 15 12 11 43 43 H 1.08998 * 109.47439 * 189.27288 * 17 16 15 44 44 H 1.08994 * 109.47470 * 69.26701 * 17 16 15 45 45 H 1.09004 * 109.46549 * 309.26905 * 17 16 15 46 46 H 1.08997 * 109.47475 * 290.00611 * 18 16 15 47 47 H 1.09000 * 109.46537 * 50.00068 * 18 16 15 48 48 H 0.97003 * 119.99947 * 179.97438 * 22 21 19 49 49 H 1.08010 * 119.92824 * 179.74331 * 27 8 7 50 50 H 1.07996 * 120.07717 * 180.25444 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 0.0005 5 6 3.6173 1.1672 -0.0006 6 6 4.3183 2.3741 0.0000 7 6 5.6978 2.3670 -0.0011 8 6 6.3866 1.1671 -0.0033 9 6 7.8936 1.1670 -0.0050 10 7 8.3848 1.1653 1.3795 11 6 9.8533 1.1658 1.4170 12 6 10.3263 1.1634 2.8721 13 1 9.8777 2.0041 3.4013 14 8 9.9325 -0.0588 3.4990 15 6 11.8505 1.2896 2.9131 16 7 12.2948 1.4066 4.3084 17 6 13.7364 1.1494 4.4252 18 6 11.9483 2.7222 4.8626 19 6 12.1929 2.7211 6.3497 20 1 12.5685 1.8322 6.8344 21 6 11.9380 3.8553 7.0910 22 7 11.4810 4.9379 6.5006 23 14 12.2419 3.8542 8.9342 24 1 12.7533 2.5237 9.3508 25 1 13.2439 4.8969 9.2713 26 1 10.9703 4.1412 9.6456 27 6 5.6978 -0.0328 -0.0093 28 6 4.3182 -0.0399 -0.0026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7819 3.3115 0.0004 34 1 6.2415 3.3003 -0.0011 35 1 8.2564 2.0575 -0.5182 36 1 8.2563 0.2776 -0.5203 37 1 8.0098 0.3834 1.8953 38 1 10.2294 2.0565 0.9138 39 1 10.2299 0.2766 0.9115 40 1 10.2957 -0.8508 3.0796 41 1 12.1568 2.1767 2.3586 42 1 12.3005 0.4055 2.4615 43 1 14.0088 1.0794 5.4783 44 1 14.2899 1.9650 3.9601 45 1 13.9800 0.2127 3.9239 46 1 12.5656 3.4882 4.3934 47 1 10.8968 2.9331 4.6675 48 1 11.3013 5.7358 7.0222 49 1 6.2414 -0.9662 -0.0152 50 1 3.7818 -0.9772 -0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569836945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:36 Heat of formation + Delta-G solvation = -53.941365 kcal Electronic energy + Delta-G solvation = -27721.807582 eV Core-core repulsion = 23748.847869 eV Total energy + Delta-G solvation = -3972.959713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50775 -38.96907 -38.14641 -36.03652 -35.07949 -34.99060 -32.46383 -32.06940 -31.27181 -29.70182 -27.76487 -27.25801 -26.18290 -24.60231 -23.25874 -22.94925 -22.18891 -21.53338 -20.60843 -20.01778 -18.60673 -16.90958 -16.49748 -16.33531 -15.94542 -15.57417 -15.54630 -15.25231 -15.12909 -14.94545 -14.69609 -14.42977 -14.15035 -13.84535 -13.71177 -13.50803 -13.37886 -13.27523 -12.75755 -12.64578 -12.59594 -12.31079 -11.98163 -11.89872 -11.60210 -11.38113 -11.30162 -11.14884 -10.93278 -10.70332 -10.59973 -10.33794 -10.31740 -9.73587 -9.64935 -9.58609 -9.27075 -9.14675 -9.06229 -8.49136 -8.38279 -7.19043 -5.97968 -3.98417 0.51713 1.09729 2.53798 2.80511 3.34795 3.42053 3.47064 3.52405 4.09155 4.31266 4.41285 4.47508 4.57493 4.64629 4.73422 4.79697 4.90114 5.02253 5.07117 5.09266 5.24388 5.30655 5.33669 5.37500 5.38725 5.43829 5.54144 5.56501 5.70119 5.72542 5.78649 5.91647 5.96420 6.03967 6.07058 6.08234 6.29092 6.35485 6.52922 6.58259 6.71782 6.87339 7.05236 7.29269 7.32315 7.34254 7.83345 7.83771 8.05454 8.13538 8.23373 8.58915 9.08946 9.65367 11.13125 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.001908 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.948826 B =14674.363624 C =15897.363121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.559 3.441 4 O -0.536 6.536 5 C -0.141 4.141 6 C -0.058 4.058 7 C -0.103 4.103 8 C -0.051 4.051 9 C 0.093 3.907 10 N -0.677 5.677 11 C 0.031 3.969 12 C 0.113 3.887 13 H 0.115 0.885 14 O -0.542 6.542 15 C 0.027 3.973 16 N -0.532 5.532 17 C 0.041 3.959 18 C 0.191 3.809 19 C -0.504 4.504 20 H 0.063 0.937 21 C 0.054 3.946 22 N -0.899 5.899 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.284 1.284 27 C -0.122 4.122 28 C -0.087 4.087 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.350 0.650 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.358 0.642 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.011 0.989 45 H 0.041 0.959 46 H -0.011 1.011 47 H 0.033 0.967 48 H 0.260 0.740 49 H 0.127 0.873 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 -13.884 -19.397 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.347 3.653 4 O -0.413 6.413 5 C -0.145 4.145 6 C -0.077 4.077 7 C -0.121 4.121 8 C -0.052 4.052 9 C -0.036 4.036 10 N -0.309 5.309 11 C -0.099 4.099 12 C 0.054 3.946 13 H 0.133 0.867 14 O -0.345 6.345 15 C -0.103 4.103 16 N -0.256 5.256 17 C -0.108 4.108 18 C 0.066 3.934 19 C -0.542 4.542 20 H 0.081 0.919 21 C -0.147 4.147 22 N -0.539 5.539 23 Si 0.725 3.275 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.210 1.210 27 C -0.140 4.140 28 C -0.105 4.105 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.236 0.764 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.203 0.797 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.030 0.970 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.144 0.856 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.338 -12.203 -18.607 27.025 hybrid contribution 1.297 -0.918 -0.155 1.597 sum -14.041 -13.121 -18.762 26.858 Atomic orbital electron populations 1.21560 0.79181 1.02345 1.02564 1.45713 1.07931 1.08674 1.76293 1.18380 0.87413 0.83667 0.75851 1.90782 1.70007 1.31166 1.49393 1.19860 0.92333 0.94736 1.07539 1.21296 0.93946 0.97676 0.94774 1.21103 0.93554 0.98320 0.99147 1.20056 0.95594 0.93175 0.96356 1.20969 0.90077 1.01562 0.90973 1.60375 1.07833 1.51110 1.11619 1.22714 0.87680 1.00863 0.98673 1.22038 0.93476 0.88648 0.90474 0.86731 1.86716 1.74323 1.14778 1.58666 1.22661 0.95650 0.99710 0.92229 1.62061 1.14098 1.35379 1.14049 1.22185 0.88719 0.97624 1.02231 1.19805 0.96266 0.82254 0.95038 1.21183 1.42991 0.97796 0.92276 0.91875 1.24993 0.95478 0.95524 0.98743 1.69966 1.45637 1.02520 1.35736 0.86449 0.77784 0.77899 0.85335 1.19695 1.21219 1.20983 1.20983 0.93857 0.97865 1.01302 1.21176 0.94463 0.96633 0.98264 0.90515 0.91986 0.92090 0.76368 0.84576 0.84831 0.89855 0.94300 0.83064 0.90183 0.95282 0.79689 0.95070 0.92287 0.90946 0.97010 0.94011 0.99369 0.94884 0.93030 0.85552 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.84 0.64 1.14 16 2 N -0.73 -5.18 5.66 -68.05 -0.39 -5.57 16 3 C 0.56 6.03 7.77 -12.33 -0.10 5.93 16 4 O -0.54 -7.78 16.35 5.31 0.09 -7.69 16 5 C -0.14 -1.41 5.87 -104.97 -0.62 -2.03 16 6 C -0.06 -0.62 9.60 -39.19 -0.38 -1.00 16 7 C -0.10 -1.04 9.68 -39.64 -0.38 -1.42 16 8 C -0.05 -0.48 5.40 -104.53 -0.56 -1.04 16 9 C 0.09 0.85 5.81 -4.97 -0.03 0.82 16 10 N -0.68 -7.89 6.49 -115.06 -0.75 -8.63 16 11 C 0.03 0.36 5.36 -3.82 -0.02 0.34 16 12 C 0.11 1.80 3.26 -26.73 -0.09 1.71 16 13 H 0.12 2.29 6.46 -51.93 -0.34 1.96 16 14 O -0.54 -8.61 12.81 -35.23 -0.45 -9.06 16 15 C 0.03 0.46 4.61 -3.83 -0.02 0.44 16 16 N -0.53 -11.43 4.66 -244.37 -1.14 -12.57 16 17 C 0.04 0.79 9.32 60.07 0.56 1.35 16 18 C 0.19 5.03 4.57 -4.97 -0.02 5.01 16 19 C -0.50 -14.46 8.58 -34.44 -0.30 -14.75 16 20 H 0.06 1.81 7.10 -52.49 -0.37 1.43 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 23 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.12 -0.97 9.68 -39.64 -0.38 -1.36 16 28 C -0.09 -0.66 9.54 -39.18 -0.37 -1.04 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.65 6.86 -40.82 -0.28 1.37 16 33 H 0.14 1.47 7.65 -52.48 -0.40 1.07 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.35 4.11 8.28 -39.29 -0.33 3.79 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.36 4.13 9.05 45.56 0.41 4.54 16 41 H 0.03 0.53 8.05 -51.93 -0.42 0.12 16 42 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 43 H 0.07 1.50 7.02 -51.93 -0.36 1.13 16 44 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 45 H 0.04 0.67 7.88 -51.93 -0.41 0.26 16 46 H -0.01 -0.32 8.07 -51.93 -0.42 -0.74 16 47 H 0.03 0.93 6.34 -51.93 -0.33 0.60 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 50 H 0.12 0.54 6.41 -52.49 -0.34 0.21 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -35.57 411.67 -10.22 -45.79 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.34 Total: 5.27 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.16 Total: -4.42 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -1.53 Total: -53.18 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.36 Total: -16.75 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.57 -10.22 -45.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569836945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.153 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds