Wall clock time and date at job start Tue Mar 31 2020 18:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00493 * 2 1 4 4 O 1.21558 * 119.99794 * 0.02562 * 3 2 1 5 5 C 1.47842 * 120.00496 * 180.02562 * 3 2 1 6 6 C 1.39574 * 120.14831 * 180.02562 * 5 3 2 7 7 C 1.37952 * 119.85498 * 180.02562 * 6 5 3 8 8 C 1.38358 * 120.14817 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.85835 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.46547 * 90.00233 * 9 8 7 11 11 C 1.46904 * 110.99534 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47085 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47253 * 305.00344 * 12 11 10 14 14 O 1.42900 * 109.47194 * 64.99751 * 12 11 10 15 15 C 1.52998 * 109.47107 * 184.99848 * 12 11 10 16 16 N 1.46899 * 109.46858 * 175.04575 * 15 12 11 17 17 C 1.46903 * 110.99991 * 163.94840 * 16 15 12 18 18 C 1.46902 * 111.00138 * 287.89426 * 16 15 12 19 19 C 1.50702 * 109.47206 * 170.00004 * 18 16 15 20 20 H 1.07990 * 119.99891 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99588 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00136 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99737 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47118 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.46938 * 120.00335 * 23 21 19 26 26 H 1.48505 * 109.46930 * 240.00323 * 23 21 19 27 27 C 1.38356 * 120.28822 * 0.23955 * 8 7 6 28 28 C 1.37962 * 120.14776 * 359.48632 * 27 8 7 29 29 H 1.08996 * 109.47663 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47041 * 300.00142 * 1 2 3 31 31 H 1.09000 * 109.46834 * 59.99570 * 1 2 3 32 32 H 0.97004 * 119.99946 * 180.02562 * 2 1 3 33 33 H 1.08007 * 120.07187 * 359.97438 * 6 5 3 34 34 H 1.08007 * 119.92746 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46893 * 330.00365 * 9 8 7 36 36 H 1.08997 * 109.46991 * 210.00249 * 9 8 7 37 37 H 1.00901 * 111.00190 * 56.04996 * 10 9 8 38 38 H 1.08996 * 109.47355 * 59.99871 * 11 10 9 39 39 H 1.09001 * 109.46826 * 299.99768 * 11 10 9 40 40 H 0.96698 * 114.00266 * 60.00042 * 14 12 11 41 41 H 1.08997 * 109.47560 * 55.04389 * 15 12 11 42 42 H 1.08998 * 109.46907 * 295.04026 * 15 12 11 43 43 H 1.08998 * 109.47439 * 189.27288 * 17 16 15 44 44 H 1.08994 * 109.47470 * 69.26701 * 17 16 15 45 45 H 1.09004 * 109.46549 * 309.26905 * 17 16 15 46 46 H 1.08997 * 109.47475 * 290.00611 * 18 16 15 47 47 H 1.09000 * 109.46537 * 50.00068 * 18 16 15 48 48 H 0.97003 * 119.99947 * 179.97438 * 22 21 19 49 49 H 1.08010 * 119.92824 * 179.74331 * 27 8 7 50 50 H 1.07996 * 120.07717 * 180.25444 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 0.0005 5 6 3.6173 1.1672 -0.0006 6 6 4.3183 2.3741 0.0000 7 6 5.6978 2.3670 -0.0011 8 6 6.3866 1.1671 -0.0033 9 6 7.8936 1.1670 -0.0050 10 7 8.3848 1.1653 1.3795 11 6 9.8533 1.1658 1.4170 12 6 10.3263 1.1634 2.8721 13 1 9.8777 2.0041 3.4013 14 8 9.9325 -0.0588 3.4990 15 6 11.8505 1.2896 2.9131 16 7 12.2948 1.4066 4.3084 17 6 13.7364 1.1494 4.4252 18 6 11.9483 2.7222 4.8626 19 6 12.1929 2.7211 6.3497 20 1 12.5685 1.8322 6.8344 21 6 11.9380 3.8553 7.0910 22 7 11.4810 4.9379 6.5006 23 14 12.2419 3.8542 8.9342 24 1 12.7533 2.5237 9.3508 25 1 13.2439 4.8969 9.2713 26 1 10.9703 4.1412 9.6456 27 6 5.6978 -0.0328 -0.0093 28 6 4.3182 -0.0399 -0.0026 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8401 -0.0004 33 1 3.7819 3.3115 0.0004 34 1 6.2415 3.3003 -0.0011 35 1 8.2564 2.0575 -0.5182 36 1 8.2563 0.2776 -0.5203 37 1 8.0098 0.3834 1.8953 38 1 10.2294 2.0565 0.9138 39 1 10.2299 0.2766 0.9115 40 1 10.2957 -0.8508 3.0796 41 1 12.1568 2.1767 2.3586 42 1 12.3005 0.4055 2.4615 43 1 14.0088 1.0794 5.4783 44 1 14.2899 1.9650 3.9601 45 1 13.9800 0.2127 3.9239 46 1 12.5656 3.4882 4.3934 47 1 10.8968 2.9331 4.6675 48 1 11.3013 5.7358 7.0222 49 1 6.2414 -0.9662 -0.0152 50 1 3.7818 -0.9772 -0.0032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569836945.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:35 Heat of formation + Delta-G solvation = -84.007814 kcal Electronic energy + Delta-G solvation = -27723.111361 eV Core-core repulsion = 23748.847869 eV Total energy + Delta-G solvation = -3974.263492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26052 -39.82677 -39.34829 -37.42719 -36.12469 -35.77865 -34.60108 -32.91411 -31.96472 -30.90111 -29.35540 -28.46689 -27.15232 -25.91173 -24.79572 -23.63925 -22.97877 -22.78507 -21.68963 -21.31394 -19.28903 -18.61985 -17.75527 -17.34698 -17.09735 -16.57864 -16.55941 -16.31847 -16.05090 -15.97143 -15.90433 -15.72983 -15.29442 -15.05145 -14.88694 -14.50136 -14.33693 -14.11936 -14.01386 -13.86979 -13.54431 -13.22779 -13.13532 -13.10992 -12.92762 -12.73669 -12.56406 -12.53650 -12.38653 -12.29218 -12.14464 -11.97991 -11.48709 -11.29658 -11.16933 -10.76097 -10.60522 -10.30276 -9.96566 -9.81823 -9.30157 -8.93638 -8.19942 -6.29360 -0.22334 0.40823 1.39429 1.41051 1.54315 1.75428 2.18194 2.40508 2.76133 3.10011 3.13958 3.51883 3.65121 3.72474 3.80304 3.89331 3.98637 4.04588 4.20728 4.29294 4.36677 4.39976 4.45473 4.47447 4.59506 4.61335 4.63441 4.64546 4.69332 4.79848 4.83121 4.86089 4.92927 5.04331 5.09180 5.14265 5.24079 5.28822 5.33053 5.34053 5.36431 5.58180 5.65742 5.88094 6.04035 6.08715 6.36047 6.45456 6.45585 6.67277 6.87177 7.09633 7.12873 7.40064 8.91295 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.001908 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.948826 B =14674.363624 C =15897.363121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.552 3.448 4 O -0.586 6.586 5 C -0.155 4.155 6 C -0.079 4.079 7 C -0.117 4.117 8 C -0.058 4.058 9 C 0.098 3.902 10 N -0.697 5.697 11 C 0.046 3.954 12 C 0.122 3.878 13 H 0.061 0.939 14 O -0.560 6.560 15 C 0.027 3.973 16 N -0.543 5.543 17 C 0.042 3.958 18 C 0.209 3.791 19 C -0.522 4.522 20 H 0.061 0.939 21 C -0.002 4.002 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.280 1.280 27 C -0.118 4.118 28 C -0.076 4.076 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.418 0.582 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.350 0.650 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.380 0.620 41 H 0.027 0.973 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.007 0.993 45 H 0.084 0.916 46 H -0.042 1.042 47 H 0.005 0.995 48 H 0.263 0.737 49 H 0.156 0.844 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 -17.599 -19.980 29.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.341 3.659 4 O -0.468 6.468 5 C -0.159 4.159 6 C -0.098 4.098 7 C -0.135 4.135 8 C -0.059 4.059 9 C -0.030 4.030 10 N -0.330 5.330 11 C -0.084 4.084 12 C 0.062 3.938 13 H 0.079 0.921 14 O -0.366 6.366 15 C -0.102 4.102 16 N -0.267 5.267 17 C -0.106 4.106 18 C 0.082 3.918 19 C -0.560 4.560 20 H 0.079 0.921 21 C -0.200 4.200 22 N -0.576 5.576 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.206 1.206 27 C -0.136 4.136 28 C -0.094 4.094 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.256 0.744 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.169 0.831 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.228 0.772 41 H 0.045 0.955 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.025 0.975 45 H 0.103 0.897 46 H -0.024 1.024 47 H 0.023 0.977 48 H 0.072 0.928 49 H 0.174 0.826 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.697 -15.995 -19.216 29.002 hybrid contribution 1.075 0.150 -0.026 1.085 sum -13.623 -15.845 -19.242 28.406 Atomic orbital electron populations 1.21731 0.78221 1.04619 1.01546 1.45645 1.08629 1.08290 1.74317 1.18635 0.87877 0.83978 0.75457 1.90752 1.70910 1.33061 1.52054 1.19953 0.92106 0.95453 1.08341 1.21291 0.94388 0.97846 0.96275 1.21154 0.93382 0.98995 1.00015 1.20196 0.95898 0.93392 0.96388 1.20965 0.89751 1.02650 0.89653 1.60295 1.07734 1.51584 1.13375 1.22476 0.88011 1.02298 0.95630 1.21727 0.92405 0.87283 0.92357 0.92112 1.86662 1.74703 1.15576 1.59622 1.22809 0.96561 1.01269 0.89581 1.61949 1.15636 1.31920 1.17179 1.22209 0.87276 0.99520 1.01589 1.19395 0.93918 0.84145 0.94295 1.21523 1.42981 0.97857 0.93664 0.92067 1.25945 0.95052 0.95070 1.03939 1.70096 1.46495 1.03224 1.37745 0.85336 0.77845 0.78416 0.79031 1.18660 1.20259 1.20559 1.21333 0.94070 0.98347 0.99859 1.21544 0.94607 0.97020 0.96246 0.86530 0.93283 0.92929 0.74380 0.86174 0.85220 0.90054 0.91776 0.83086 0.90428 0.91881 0.77183 0.95505 0.88161 0.92876 0.97481 0.89695 1.02434 0.97744 0.92787 0.82606 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.70 127.77 1.37 2.21 16 2 N -0.72 -9.05 5.66 -487.48 -2.76 -11.81 16 3 C 0.55 12.03 7.77 86.79 0.67 12.71 16 4 O -0.59 -18.09 16.35 -3.90 -0.06 -18.15 16 5 C -0.16 -3.07 5.87 -20.09 -0.12 -3.19 16 6 C -0.08 -1.81 9.60 22.52 0.22 -1.59 16 7 C -0.12 -2.46 9.68 22.23 0.22 -2.24 16 8 C -0.06 -1.01 5.40 -19.81 -0.11 -1.12 16 9 C 0.10 1.59 5.81 85.56 0.50 2.09 16 10 N -0.70 -15.30 6.49 -517.93 -3.36 -18.67 16 11 C 0.05 0.99 5.36 86.30 0.46 1.46 16 12 C 0.12 3.83 3.26 30.59 0.10 3.93 16 13 H 0.06 2.58 6.46 -2.39 -0.02 2.56 16 14 O -0.56 -16.93 12.81 -148.98 -1.91 -18.84 16 15 C 0.03 0.87 4.61 86.30 0.40 1.27 16 16 N -0.54 -23.27 4.66 -927.06 -4.32 -27.58 16 17 C 0.04 1.58 9.32 127.69 1.19 2.77 16 18 C 0.21 11.43 4.57 85.56 0.39 11.82 16 19 C -0.52 -30.65 8.58 25.60 0.22 -30.43 16 20 H 0.06 3.54 7.10 -2.92 -0.02 3.52 16 21 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 22 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 23 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 C -0.12 -1.54 9.68 22.23 0.22 -1.33 16 28 C -0.08 -0.97 9.54 22.53 0.21 -0.75 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.42 2.19 6.86 -92.71 -0.64 1.55 16 33 H 0.12 3.00 7.65 -2.91 -0.02 2.97 16 34 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 36 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.35 7.60 8.28 -89.69 -0.74 6.86 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.38 7.52 9.05 -74.06 -0.67 6.85 16 41 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 42 H 0.10 2.44 7.82 -2.39 -0.02 2.42 16 43 H 0.05 2.17 7.02 -2.39 -0.02 2.15 16 44 H 0.01 0.26 8.07 -2.39 -0.02 0.24 16 45 H 0.08 2.44 7.88 -2.39 -0.02 2.42 16 46 H -0.04 -2.49 8.07 -2.39 -0.02 -2.51 16 47 H 0.00 0.27 6.34 -2.39 -0.02 0.26 16 48 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 50 H 0.16 0.73 6.41 -2.91 -0.02 0.71 16 Total: -1.00 -82.27 411.67 -4.79 -87.06 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -1.09 Total: 20.08 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 6.40 Total: -2.09 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -10.15 Total: -115.88 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.97 Total: -36.99 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -82.27 -4.79 -87.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569836945.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.047 kcal (2) G-P(sol) polarization free energy of solvation -82.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds