Wall clock time and date at job start Tue Mar 31 2020 18:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53006 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47070 * 64.99887 * 4 3 2 6 6 C 1.39680 * 120.00089 * 179.97438 * 5 4 3 7 7 C 1.38936 * 120.06961 * 359.72084 * 6 5 4 8 8 C 1.38086 * 119.92155 * 179.78977 * 7 6 5 9 9 C 1.38305 * 120.07432 * 0.48799 * 8 7 6 10 10 C 1.38270 * 120.14983 * 359.74433 * 9 8 7 11 11 C 1.38127 * 120.07353 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.03258 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47216 * 259.97747 * 12 11 10 14 14 C 1.34780 * 120.00101 * 180.02562 * 13 12 11 15 15 O 1.21287 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00140 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.47035 * 320.00294 * 16 14 13 18 18 N 1.46901 * 109.47019 * 199.99916 * 16 14 13 19 19 C 1.53001 * 109.46732 * 80.00004 * 16 14 13 20 20 C 1.53001 * 109.46782 * 184.99569 * 19 16 14 21 21 C 1.50700 * 109.46889 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00133 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00423 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99648 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46840 * 90.00023 * 25 23 21 27 27 H 1.48501 * 109.46610 * 209.99826 * 25 23 21 28 28 H 1.48495 * 109.46925 * 329.99935 * 25 23 21 29 29 H 1.09002 * 109.47367 * 59.99723 * 1 2 3 30 30 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46688 * 300.00244 * 1 2 3 32 32 H 1.08993 * 109.47732 * 60.00254 * 3 2 1 33 33 H 1.09000 * 109.47141 * 299.99893 * 3 2 1 34 34 H 1.09004 * 109.46579 * 184.99441 * 4 3 2 35 35 H 1.08992 * 109.47046 * 304.99625 * 4 3 2 36 36 H 0.97001 * 120.00404 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.03901 * 0.02562 * 7 6 5 38 38 H 1.07998 * 119.96468 * 180.26007 * 8 7 6 39 39 H 1.07997 * 119.92695 * 179.76802 * 9 8 7 40 40 H 1.08005 * 119.96063 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.47409 * 19.98454 * 12 11 10 42 42 H 1.09001 * 109.46472 * 139.98214 * 12 11 10 43 43 H 0.96998 * 120.00126 * 0.02562 * 13 12 11 44 44 H 1.00903 * 110.99697 * 176.04329 * 18 16 14 45 45 H 1.00898 * 110.99936 * 300.00256 * 18 16 14 46 46 H 1.08997 * 109.47245 * 305.00270 * 19 16 14 47 47 H 1.09007 * 109.46930 * 65.00464 * 19 16 14 48 48 H 1.08997 * 109.47803 * 300.00359 * 20 19 16 49 49 H 1.09007 * 109.46657 * 60.00728 * 20 19 16 50 50 H 0.96993 * 120.00018 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 5.3360 0.3489 -1.4849 7 6 6.2734 0.7275 -0.5318 8 6 7.6172 0.5091 -0.7627 9 6 8.0311 -0.0766 -1.9452 10 6 7.1011 -0.4502 -2.8979 11 6 5.7550 -0.2390 -2.6713 12 6 4.7423 -0.6460 -3.7105 13 7 4.3331 0.5310 -4.4808 14 6 3.4278 0.4065 -5.4715 15 8 2.9516 -0.6798 -5.7249 16 6 3.0064 1.6173 -6.2637 17 1 2.9008 2.4709 -5.5940 18 7 1.7206 1.3489 -6.9214 19 6 4.0660 1.9279 -7.3227 20 6 3.7010 3.2272 -8.0435 21 6 4.7450 3.5335 -9.0862 22 1 5.5846 2.8679 -9.2216 23 6 4.6284 4.6636 -9.8675 24 7 5.5391 4.9307 -10.7778 25 14 3.1765 5.8155 -9.6328 26 1 3.5230 6.8497 -8.6252 27 1 2.8518 6.4720 -10.9246 28 1 2.0006 5.0402 -9.1623 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.9785 2.1766 0.0888 35 1 3.8514 0.5683 0.8409 36 1 3.3224 0.3033 -1.9206 37 1 5.9512 1.1887 0.3900 38 1 8.3462 0.7993 -0.0205 39 1 9.0829 -0.2430 -2.1249 40 1 7.4277 -0.9070 -3.8204 41 1 5.1852 -1.3828 -4.3805 42 1 3.8714 -1.0792 -3.2187 43 1 4.7137 1.3998 -4.2780 44 1 1.3847 2.1675 -7.4064 45 1 1.7924 0.5613 -7.5479 46 1 5.0380 2.0395 -6.8424 47 1 4.1087 1.1119 -8.0442 48 1 2.7290 3.1157 -8.5239 49 1 3.6583 4.0433 -7.3220 50 1 5.4572 5.7259 -11.3271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577749176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:11 Heat of formation + Delta-G solvation = -66.296349 kcal Electronic energy + Delta-G solvation = -28841.312597 eV Core-core repulsion = 24867.817132 eV Total energy + Delta-G solvation = -3973.495465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22357 -39.30166 -38.38263 -35.74588 -35.69053 -34.80165 -32.79946 -31.57753 -30.96530 -30.31026 -28.37181 -27.31967 -26.55706 -25.70964 -23.70729 -23.36552 -21.45062 -21.27514 -20.53270 -19.84604 -17.85549 -17.37357 -17.06832 -16.73656 -16.65010 -16.25572 -15.87027 -15.34673 -15.16764 -14.71014 -14.58573 -14.40139 -14.24564 -14.14044 -14.03825 -13.89422 -13.36015 -13.13926 -13.01541 -12.71943 -12.68483 -12.48661 -12.43403 -12.11334 -11.81800 -11.64425 -11.42877 -11.36490 -11.06648 -10.97571 -10.36826 -10.31160 -10.13976 -10.07866 -9.89337 -9.48387 -9.31130 -8.99990 -8.93283 -8.62182 -8.31439 -7.58155 -6.11554 -4.10959 1.18766 1.48673 2.90704 3.12409 3.24290 3.29275 3.32629 3.33586 3.33917 3.84575 4.37380 4.45009 4.58177 4.66048 4.73845 4.84521 4.94679 4.97942 5.00171 5.01019 5.07185 5.14984 5.20560 5.21433 5.28301 5.34128 5.35473 5.45941 5.51639 5.55774 5.62764 5.74445 5.89613 6.13534 6.15841 6.33717 6.36745 6.48815 6.52336 6.65128 6.66464 6.70937 7.09982 7.12527 7.21768 7.34357 7.48911 7.66515 7.68611 7.78102 8.43715 8.45703 8.92785 9.49685 11.01754 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.002839 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.791946 B = 9859.553744 C =11209.300224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.128 3.872 5 N -0.740 5.740 6 C 0.235 3.765 7 C -0.203 4.203 8 C -0.065 4.065 9 C -0.182 4.182 10 C -0.050 4.050 11 C -0.184 4.184 12 C 0.171 3.829 13 N -0.730 5.730 14 C 0.524 3.476 15 O -0.538 6.538 16 C 0.072 3.928 17 H 0.094 0.906 18 N -0.831 5.831 19 C -0.129 4.129 20 C -0.010 4.010 21 C -0.523 4.523 22 H 0.071 0.929 23 C 0.067 3.933 24 N -0.901 5.901 25 Si 0.881 3.119 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.265 1.265 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.406 0.594 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.402 0.598 44 H 0.350 0.650 45 H 0.348 0.652 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.013 0.987 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -7.831 26.048 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.030 4.030 4 C 0.003 3.997 5 N -0.370 5.370 6 C 0.130 3.870 7 C -0.226 4.226 8 C -0.084 4.084 9 C -0.202 4.202 10 C -0.069 4.069 11 C -0.189 4.189 12 C 0.047 3.953 13 N -0.383 5.383 14 C 0.311 3.689 15 O -0.413 6.413 16 C -0.043 4.043 17 H 0.112 0.888 18 N -0.363 5.363 19 C -0.169 4.169 20 C -0.048 4.048 21 C -0.561 4.561 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.539 5.539 25 Si 0.709 3.291 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.190 1.190 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.236 0.764 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.034 0.966 49 H 0.031 0.969 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.982 -8.716 26.647 28.317 hybrid contribution -0.312 1.561 -0.969 1.864 sum -4.294 -7.155 25.678 27.000 Atomic orbital electron populations 1.22777 0.80576 1.03091 1.00133 1.87933 1.20071 1.27226 1.95448 1.22791 0.93162 0.85643 1.01431 1.21362 0.92277 0.98330 0.87716 1.44716 1.04041 1.67827 1.20464 1.17646 0.84095 0.92492 0.92744 1.20587 0.92819 1.09085 1.00110 1.20917 0.94965 0.95862 0.96640 1.20897 0.99397 1.04770 0.95181 1.20891 0.91496 0.96112 0.98417 1.19324 0.94762 1.09209 0.95635 1.19897 0.95764 0.88239 0.91365 1.46165 1.44766 1.11627 1.35775 1.20802 0.77855 0.90890 0.79360 1.90648 1.54738 1.28481 1.67477 1.21499 0.91379 0.94739 0.96684 0.88771 1.58742 1.26367 1.11257 1.39902 1.22194 0.97428 1.00585 0.96685 1.19570 0.97367 0.92099 0.95715 1.21075 1.08879 1.08985 1.17189 0.91047 1.25046 0.96034 0.97614 0.94759 1.69908 1.34707 1.27085 1.22245 0.86761 0.83568 0.81220 0.77597 1.20286 1.21334 1.19003 0.93709 0.89427 0.94038 0.91667 0.92345 0.90619 0.91361 0.75767 0.86250 0.86281 0.86310 0.85865 0.90791 0.91497 0.76374 0.83560 0.83846 0.91878 0.92044 0.96629 0.96868 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.56 10.65 -35.23 -0.38 -3.94 16 3 C 0.05 0.33 6.07 37.16 0.23 0.55 16 4 C 0.13 0.92 5.30 -4.04 -0.02 0.89 16 5 N -0.74 -6.92 5.59 -58.63 -0.33 -7.24 16 6 C 0.24 2.41 6.63 -83.79 -0.56 1.85 16 7 C -0.20 -1.89 9.31 -39.38 -0.37 -2.26 16 8 C -0.06 -0.58 10.04 -39.61 -0.40 -0.98 16 9 C -0.18 -1.74 10.04 -39.54 -0.40 -2.14 16 10 C -0.05 -0.52 9.66 -39.61 -0.38 -0.90 16 11 C -0.18 -2.00 5.27 -104.42 -0.55 -2.55 16 12 C 0.17 2.05 5.10 -5.20 -0.03 2.02 16 13 N -0.73 -9.36 5.55 -61.47 -0.34 -9.70 16 14 C 0.52 8.37 7.08 -10.98 -0.08 8.29 16 15 O -0.54 -10.24 16.25 5.55 0.09 -10.15 16 16 C 0.07 1.16 3.21 -68.86 -0.22 0.94 16 17 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 18 N -0.83 -13.41 8.94 -5.65 -0.05 -13.46 16 19 C -0.13 -2.45 4.78 -26.73 -0.13 -2.57 16 20 C -0.01 -0.23 3.81 -27.88 -0.11 -0.33 16 21 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 22 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 23 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 24 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 25 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.45 7.94 -51.93 -0.41 0.03 16 35 H 0.07 0.49 7.96 -51.93 -0.41 0.08 16 36 H 0.41 4.24 6.70 -40.82 -0.27 3.97 16 37 H 0.12 0.91 6.73 -52.49 -0.35 0.55 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.18 8.04 -52.48 -0.42 0.76 16 41 H 0.07 0.94 8.00 -51.93 -0.42 0.52 16 42 H 0.07 0.84 7.10 -51.93 -0.37 0.48 16 43 H 0.40 4.70 8.46 -40.82 -0.35 4.36 16 44 H 0.35 5.49 7.55 -39.29 -0.30 5.20 16 45 H 0.35 5.78 8.58 -39.29 -0.34 5.44 16 46 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 49 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 409.70 15.07 6.17 6.17 Total: -1.00 -33.18 409.70 -9.20 -42.38 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -8.15 Total: 15.13 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.32 Total: -8.95 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.05 Total: -57.10 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.28 Total: -14.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.18 -9.20 -42.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577749176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.914 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds