Wall clock time and date at job start Tue Mar 31 2020 18:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99824 * 2 1 4 4 C 1.53006 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47070 * 64.99887 * 4 3 2 6 6 C 1.39680 * 120.00089 * 179.97438 * 5 4 3 7 7 C 1.38936 * 120.06961 * 359.72084 * 6 5 4 8 8 C 1.38086 * 119.92155 * 179.78977 * 7 6 5 9 9 C 1.38305 * 120.07432 * 0.48799 * 8 7 6 10 10 C 1.38270 * 120.14983 * 359.74433 * 9 8 7 11 11 C 1.38127 * 120.07353 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.03258 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.47216 * 259.97747 * 12 11 10 14 14 C 1.34780 * 120.00101 * 180.02562 * 13 12 11 15 15 O 1.21287 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00140 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.47035 * 320.00294 * 16 14 13 18 18 N 1.46901 * 109.47019 * 199.99916 * 16 14 13 19 19 C 1.53001 * 109.46732 * 80.00004 * 16 14 13 20 20 C 1.53001 * 109.46782 * 184.99569 * 19 16 14 21 21 C 1.50700 * 109.46889 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00133 * 180.02562 * 21 20 19 24 24 N 1.31510 * 120.00423 * 180.02562 * 23 21 20 25 25 Si 1.86810 * 119.99648 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46840 * 90.00023 * 25 23 21 27 27 H 1.48501 * 109.46610 * 209.99826 * 25 23 21 28 28 H 1.48495 * 109.46925 * 329.99935 * 25 23 21 29 29 H 1.09002 * 109.47367 * 59.99723 * 1 2 3 30 30 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46688 * 300.00244 * 1 2 3 32 32 H 1.08993 * 109.47732 * 60.00254 * 3 2 1 33 33 H 1.09000 * 109.47141 * 299.99893 * 3 2 1 34 34 H 1.09004 * 109.46579 * 184.99441 * 4 3 2 35 35 H 1.08992 * 109.47046 * 304.99625 * 4 3 2 36 36 H 0.97001 * 120.00404 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.03901 * 0.02562 * 7 6 5 38 38 H 1.07998 * 119.96468 * 180.26007 * 8 7 6 39 39 H 1.07997 * 119.92695 * 179.76802 * 9 8 7 40 40 H 1.08005 * 119.96063 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.47409 * 19.98454 * 12 11 10 42 42 H 1.09001 * 109.46472 * 139.98214 * 12 11 10 43 43 H 0.96998 * 120.00126 * 0.02562 * 13 12 11 44 44 H 1.00903 * 110.99697 * 176.04329 * 18 16 14 45 45 H 1.00898 * 110.99936 * 300.00256 * 18 16 14 46 46 H 1.08997 * 109.47245 * 305.00270 * 19 16 14 47 47 H 1.09007 * 109.46930 * 65.00464 * 19 16 14 48 48 H 1.08997 * 109.47803 * 300.00359 * 20 19 16 49 49 H 1.09007 * 109.46657 * 60.00728 * 20 19 16 50 50 H 0.96993 * 120.00018 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 5.3360 0.3489 -1.4849 7 6 6.2734 0.7275 -0.5318 8 6 7.6172 0.5091 -0.7627 9 6 8.0311 -0.0766 -1.9452 10 6 7.1011 -0.4502 -2.8979 11 6 5.7550 -0.2390 -2.6713 12 6 4.7423 -0.6460 -3.7105 13 7 4.3331 0.5310 -4.4808 14 6 3.4278 0.4065 -5.4715 15 8 2.9516 -0.6798 -5.7249 16 6 3.0064 1.6173 -6.2637 17 1 2.9008 2.4709 -5.5940 18 7 1.7206 1.3489 -6.9214 19 6 4.0660 1.9279 -7.3227 20 6 3.7010 3.2272 -8.0435 21 6 4.7450 3.5335 -9.0862 22 1 5.5846 2.8679 -9.2216 23 6 4.6284 4.6636 -9.8675 24 7 5.5391 4.9307 -10.7778 25 14 3.1765 5.8155 -9.6328 26 1 3.5230 6.8497 -8.6252 27 1 2.8518 6.4720 -10.9246 28 1 2.0006 5.0402 -9.1623 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.9785 2.1766 0.0888 35 1 3.8514 0.5683 0.8409 36 1 3.3224 0.3033 -1.9206 37 1 5.9512 1.1887 0.3900 38 1 8.3462 0.7993 -0.0205 39 1 9.0829 -0.2430 -2.1249 40 1 7.4277 -0.9070 -3.8204 41 1 5.1852 -1.3828 -4.3805 42 1 3.8714 -1.0792 -3.2187 43 1 4.7137 1.3998 -4.2780 44 1 1.3847 2.1675 -7.4064 45 1 1.7924 0.5613 -7.5479 46 1 5.0380 2.0395 -6.8424 47 1 4.1087 1.1119 -8.0442 48 1 2.7290 3.1157 -8.5239 49 1 3.6583 4.0433 -7.3220 50 1 5.4572 5.7259 -11.3271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577749176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:10 Heat of formation + Delta-G solvation = -91.560419 kcal Electronic energy + Delta-G solvation = -28842.408129 eV Core-core repulsion = 24867.817132 eV Total energy + Delta-G solvation = -3974.590997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.20427 -40.34524 -38.97519 -37.20019 -36.36902 -35.94169 -34.81173 -32.44830 -32.08213 -31.61686 -29.17667 -28.53972 -27.17784 -26.94614 -25.00660 -24.22242 -22.30269 -22.10861 -22.01114 -21.15759 -19.17398 -18.57504 -18.22266 -17.64550 -17.42391 -17.23279 -16.66196 -16.31593 -16.15675 -16.07659 -15.81746 -15.64444 -15.46821 -15.01211 -14.87105 -14.77660 -14.59511 -14.59017 -14.35596 -13.93340 -13.60510 -13.46469 -13.39341 -13.07426 -13.04900 -12.70068 -12.64718 -12.22646 -12.12118 -12.09456 -11.85942 -11.79663 -11.69662 -11.41544 -10.99674 -10.84979 -10.77695 -10.69062 -10.13540 -9.77121 -9.63548 -8.30289 -8.29895 -6.35849 0.42170 0.74746 1.37495 1.39962 1.51102 1.61175 2.20835 2.36002 2.46737 2.81700 3.04104 3.05449 3.70849 3.72428 3.85170 3.91018 3.95097 4.08494 4.16095 4.18498 4.25850 4.38013 4.39459 4.48008 4.52278 4.56072 4.59564 4.62706 4.67361 4.72767 4.77352 4.81106 4.85134 4.93698 4.96346 5.15342 5.34981 5.38189 5.40691 5.46155 5.62274 5.63883 5.77202 5.98235 6.05176 6.15342 6.24963 6.42994 6.47965 6.54320 6.72196 6.72724 7.22136 7.28959 8.86816 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.002839 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.791946 B = 9859.553744 C =11209.300224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.046 3.954 4 C 0.126 3.874 5 N -0.742 5.742 6 C 0.228 3.772 7 C -0.207 4.207 8 C -0.064 4.064 9 C -0.191 4.191 10 C -0.062 4.062 11 C -0.198 4.198 12 C 0.177 3.823 13 N -0.713 5.713 14 C 0.524 3.476 15 O -0.572 6.572 16 C 0.083 3.917 17 H 0.118 0.882 18 N -0.829 5.829 19 C -0.118 4.118 20 C -0.005 4.005 21 C -0.536 4.536 22 H 0.025 0.975 23 C 0.002 3.998 24 N -0.953 5.953 25 Si 0.955 3.045 26 H -0.265 1.265 27 H -0.289 1.289 28 H -0.238 1.238 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.410 0.590 44 H 0.354 0.646 45 H 0.345 0.655 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.026 0.974 49 H 0.030 0.970 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 -6.447 28.698 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.031 4.031 4 C 0.002 3.998 5 N -0.371 5.371 6 C 0.123 3.877 7 C -0.230 4.230 8 C -0.083 4.083 9 C -0.211 4.211 10 C -0.082 4.082 11 C -0.203 4.203 12 C 0.054 3.946 13 N -0.365 5.365 14 C 0.311 3.689 15 O -0.450 6.450 16 C -0.033 4.033 17 H 0.136 0.864 18 N -0.360 5.360 19 C -0.158 4.158 20 C -0.042 4.042 21 C -0.574 4.574 22 H 0.044 0.956 23 C -0.195 4.195 24 N -0.594 5.594 25 Si 0.778 3.222 26 H -0.189 1.189 27 H -0.215 1.215 28 H -0.161 1.161 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.246 0.754 44 H 0.169 0.831 45 H 0.158 0.842 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.290 -7.328 29.346 30.706 hybrid contribution 0.213 1.066 -1.765 2.073 sum -5.077 -6.262 27.581 28.735 Atomic orbital electron populations 1.22877 0.79693 1.03523 1.00832 1.87894 1.21223 1.28639 1.95627 1.22894 0.92877 0.85005 1.02296 1.21526 0.92604 0.98982 0.86684 1.44836 1.03544 1.67750 1.20998 1.17791 0.84737 0.92455 0.92722 1.20853 0.92811 1.08826 1.00501 1.21251 0.95450 0.94833 0.96763 1.21133 0.99983 1.04739 0.95293 1.21021 0.91674 0.96516 0.98944 1.19223 0.94554 1.10690 0.95835 1.19824 0.95844 0.87589 0.91314 1.46072 1.43396 1.12383 1.34667 1.20788 0.78081 0.90256 0.79778 1.90637 1.56189 1.29548 1.68676 1.21415 0.90206 0.95617 0.96033 0.86448 1.58758 1.26053 1.11319 1.39910 1.22015 0.98563 0.98305 0.96930 1.19493 0.95890 0.94084 0.94768 1.21447 1.08957 1.08218 1.18731 0.95639 1.26097 0.99442 0.99724 0.94226 1.70081 1.37393 1.28133 1.23786 0.85594 0.80066 0.78850 0.77736 1.18950 1.21528 1.16076 0.93894 0.89261 0.92404 0.89493 0.92670 0.88903 0.91266 0.76625 0.84393 0.83860 0.84954 0.85880 0.91846 0.92117 0.75437 0.83074 0.84219 0.91970 0.94012 0.95580 0.95214 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.14 10.65 -148.98 -1.59 -8.72 16 3 C 0.05 0.55 6.07 71.98 0.44 0.99 16 4 C 0.13 1.54 5.30 86.38 0.46 2.00 16 5 N -0.74 -12.89 5.59 -339.42 -1.90 -14.79 16 6 C 0.23 4.38 6.63 38.21 0.25 4.63 16 7 C -0.21 -3.39 9.31 22.40 0.21 -3.19 16 8 C -0.06 -1.00 10.04 22.25 0.22 -0.78 16 9 C -0.19 -3.39 10.04 22.29 0.22 -3.16 16 10 C -0.06 -1.27 9.66 22.25 0.22 -1.06 16 11 C -0.20 -4.20 5.27 -19.74 -0.10 -4.31 16 12 C 0.18 4.28 5.10 85.63 0.44 4.72 16 13 N -0.71 -17.83 5.55 -466.79 -2.59 -20.42 16 14 C 0.52 16.38 7.08 87.66 0.62 17.00 16 15 O -0.57 -21.79 16.25 -3.05 -0.05 -21.83 16 16 C 0.08 2.51 3.21 44.17 0.14 2.65 16 17 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 18 N -0.83 -25.31 8.94 -171.80 -1.54 -26.84 16 19 C -0.12 -4.40 4.78 30.60 0.15 -4.26 16 20 C 0.00 -0.21 3.81 29.85 0.11 -0.10 16 21 C -0.54 -30.25 9.66 25.60 0.25 -30.01 16 22 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 23 C 0.00 0.10 5.47 84.66 0.46 0.56 16 24 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 25 Si 0.95 42.53 27.47 68.60 1.88 44.41 16 26 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 27 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 28 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.83 7.94 -2.39 -0.02 0.81 16 35 H 0.07 0.85 7.96 -2.39 -0.02 0.83 16 36 H 0.40 8.02 6.70 -92.71 -0.62 7.39 16 37 H 0.14 1.68 6.73 -2.91 -0.02 1.66 16 38 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.12 2.39 8.04 -2.91 -0.02 2.37 16 41 H 0.06 1.66 8.00 -2.39 -0.02 1.64 16 42 H 0.06 1.55 7.10 -2.39 -0.02 1.54 16 43 H 0.41 9.07 8.46 -92.71 -0.78 8.28 16 44 H 0.35 10.19 7.55 -89.69 -0.68 9.52 16 45 H 0.34 11.13 8.58 -89.70 -0.77 10.36 16 46 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.03 1.09 5.93 -2.39 -0.01 1.07 16 49 H 0.03 1.21 7.57 -2.38 -0.02 1.19 16 50 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.93 409.70 -2.08 -75.01 By element: Atomic # 1 Polarization: 47.08 SS G_CDS: -1.93 Total: 45.14 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.33 Total: -12.71 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.72 Total: -121.30 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.64 Total: -30.56 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Total: -72.93 -2.08 -75.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577749176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.553 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds