Wall clock time and date at job start Tue Mar 31 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99918 * 2 1 4 4 C 1.46899 * 110.99793 * 123.94998 * 2 1 3 5 5 C 1.53002 * 109.47311 * 170.00424 * 4 2 1 6 6 N 1.46496 * 109.47214 * 180.02562 * 5 4 2 7 7 C 1.35947 * 119.60387 * 269.72730 * 6 5 4 8 8 C 1.35887 * 120.59505 * 179.72215 * 7 6 5 9 9 N 1.40380 * 120.09229 * 180.25212 * 8 7 6 10 10 C 1.34771 * 120.00571 * 122.57372 * 9 8 7 11 11 O 1.21306 * 119.99425 * 4.82292 * 10 9 8 12 12 C 1.50696 * 120.00432 * 184.81640 * 10 9 8 13 13 C 1.53004 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46796 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46462 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46879 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00262 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99762 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47140 * 60.00048 * 20 18 16 22 22 H 1.48498 * 109.47197 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47394 * 300.00045 * 20 18 16 24 24 C 1.40637 * 119.82447 * 0.57006 * 8 7 6 25 25 C 1.36356 * 119.24233 * 359.70417 * 24 8 7 26 26 C 1.34634 * 119.61200 * 90.00003 * 6 5 4 27 27 O 1.22092 * 119.91959 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47789 * 296.05022 * 1 2 3 29 29 H 1.09000 * 109.47017 * 56.05113 * 1 2 3 30 30 H 1.09002 * 109.47049 * 176.04862 * 1 2 3 31 31 H 1.08992 * 109.47214 * 183.95178 * 3 2 1 32 32 H 1.09004 * 109.46817 * 303.94789 * 3 2 1 33 33 H 1.09004 * 109.47320 * 63.94631 * 3 2 1 34 34 H 1.08996 * 109.47611 * 50.00046 * 4 2 1 35 35 H 1.09008 * 109.47246 * 290.00154 * 4 2 1 36 36 H 1.08999 * 109.46824 * 300.00261 * 5 4 2 37 37 H 1.09003 * 109.46872 * 59.99626 * 5 4 2 38 38 H 1.07994 * 119.70648 * 359.97438 * 7 6 5 39 39 H 0.97008 * 119.99823 * 302.58057 * 9 8 7 40 40 H 1.08995 * 109.47319 * 300.00500 * 12 10 9 41 41 H 1.09007 * 109.46769 * 60.00663 * 12 10 9 42 42 H 1.08995 * 109.47275 * 300.00414 * 13 12 10 43 43 H 1.09000 * 109.46489 * 60.00337 * 13 12 10 44 44 H 1.08995 * 109.47403 * 300.00160 * 14 13 12 45 45 H 1.08993 * 109.47088 * 60.00697 * 14 13 12 46 46 H 1.08995 * 109.47311 * 300.00056 * 15 14 13 47 47 H 1.09000 * 109.47327 * 60.00725 * 15 14 13 48 48 H 0.96991 * 119.99940 * 179.97438 * 19 18 16 49 49 H 1.08001 * 120.37847 * 179.68293 * 24 8 7 50 50 H 1.07998 * 120.30385 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 7 4.0292 -1.7196 2.1048 7 6 4.4666 -1.0633 3.2121 8 6 4.9520 -1.7524 4.2779 9 7 5.3959 -1.0642 5.4181 10 6 4.8480 -1.3285 6.6207 11 8 4.0343 -2.2211 6.7335 12 6 5.2462 -0.5153 7.8253 13 6 4.4842 -1.0167 9.0538 14 6 4.8881 -0.1906 10.2766 15 6 4.1265 -0.6924 11.5051 16 6 4.5248 0.1208 12.7098 17 1 5.2484 0.9162 12.6091 18 6 3.9654 -0.1507 13.9404 19 7 3.0847 -1.1196 14.0630 20 14 4.4586 0.8578 15.4334 21 1 4.1289 2.2863 15.1968 22 1 3.7196 0.3707 16.6258 23 1 5.9188 0.7185 15.6645 24 6 5.0148 -3.1566 4.2331 25 6 4.5794 -3.8076 3.1169 26 6 4.0779 -3.0633 2.0360 27 8 3.6851 -3.6363 1.0320 28 1 -0.3635 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5898 1.9163 -0.8525 33 1 1.7042 1.8725 0.9233 34 1 1.5089 -1.7406 1.1758 35 1 1.7974 -0.2246 2.0629 36 1 3.7024 -1.4965 0.0454 37 1 3.9908 0.0195 0.9325 38 1 4.4240 0.0153 3.2467 39 1 6.0970 -0.3982 5.3404 40 1 6.3178 -0.6190 7.9956 41 1 5.0058 0.5335 7.6513 42 1 3.4126 -0.9133 8.8837 43 1 4.7250 -2.0654 9.2275 44 1 5.9598 -0.2936 10.4468 45 1 4.6470 0.8580 10.1025 46 1 3.0548 -0.5898 11.3351 47 1 4.3681 -1.7410 11.6791 48 1 2.6915 -1.3108 14.9288 49 1 5.4037 -3.7130 5.0731 50 1 4.6194 -4.8856 3.0643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:30 Heat of formation + Delta-G solvation = -43.834462 kcal Electronic energy + Delta-G solvation = -27794.738283 eV Core-core repulsion = 23822.216839 eV Total energy + Delta-G solvation = -3972.521444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82975 -39.98870 -38.13040 -37.30308 -35.60515 -34.89381 -33.83173 -32.64267 -30.46041 -30.09605 -28.76786 -28.12840 -25.82183 -25.49344 -24.06167 -23.28292 -22.22214 -21.56622 -20.43722 -20.04525 -18.43641 -17.96015 -17.00995 -16.90222 -16.58404 -16.19144 -15.96953 -15.90870 -15.63450 -15.16259 -14.83256 -14.50129 -14.44344 -14.13332 -14.04693 -13.88300 -13.31578 -13.08567 -12.81177 -12.66278 -12.61070 -12.34031 -12.26785 -12.21504 -11.99785 -11.75491 -11.64969 -11.51761 -11.00581 -10.59080 -10.57696 -10.51775 -10.46300 -10.27026 -10.04915 -9.77047 -9.64613 -9.27866 -9.03273 -8.96904 -8.32730 -8.10795 -5.97482 -4.00321 0.45481 1.42412 2.04322 2.53637 2.95566 3.27950 3.33242 3.38016 3.39863 3.48130 4.12308 4.14892 4.36185 4.46411 4.55523 4.59182 4.61257 4.70722 4.80682 4.83499 4.92562 5.00544 5.07788 5.19611 5.25781 5.26998 5.31309 5.37757 5.39288 5.42590 5.46607 5.66448 5.74796 5.76232 6.01788 6.06462 6.22340 6.36353 6.38266 6.41769 6.48751 6.69242 6.77638 6.95435 7.12345 7.18104 7.70593 7.70832 7.86449 8.03193 8.06000 8.44836 9.07159 9.63398 11.13731 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.001726 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.599692 B =16218.304782 C =17145.886906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.041 3.959 5 C 0.097 3.903 6 N -0.489 5.489 7 C 0.112 3.888 8 C 0.045 3.955 9 N -0.680 5.680 10 C 0.514 3.486 11 O -0.517 6.517 12 C -0.136 4.136 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.002 4.002 25 C -0.232 4.232 26 C 0.513 3.487 27 O -0.548 6.548 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.162 0.838 39 H 0.409 0.591 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.261 0.739 49 H 0.139 0.861 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 4.748 -30.449 31.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.132 4.132 4 C -0.088 4.088 5 C -0.025 4.025 6 N -0.201 5.201 7 C -0.016 4.016 8 C -0.052 4.052 9 N -0.331 5.331 10 C 0.302 3.698 11 O -0.390 6.390 12 C -0.176 4.176 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.025 4.025 25 C -0.254 4.254 26 C 0.315 3.685 27 O -0.430 6.430 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.180 0.820 39 H 0.245 0.755 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.156 0.844 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.675 3.434 -31.301 31.602 hybrid contribution 0.320 1.372 1.766 2.259 sum 2.996 4.806 -29.535 30.073 Atomic orbital electron populations 1.22400 0.86317 1.02802 1.00819 1.61875 1.08659 1.13890 1.42281 1.22520 1.00895 0.88719 1.01049 1.22425 0.94641 0.99724 0.92022 1.21939 0.94210 0.96647 0.89698 1.45300 1.51291 1.08397 1.15149 1.21734 0.94442 0.98656 0.86816 1.16692 1.08245 0.91228 0.89077 1.43449 1.41164 1.43203 1.05318 1.21367 0.80297 0.84231 0.83866 1.90755 1.32647 1.30848 1.84769 1.21807 1.02962 1.00033 0.92791 1.21477 0.99797 1.00645 0.92331 1.21649 1.00086 0.98111 0.94943 1.19094 0.95362 0.96500 0.90785 1.21238 1.24298 1.17135 0.93349 0.92802 1.25045 0.95169 0.95341 0.99014 1.69959 1.28778 1.30227 1.24437 0.86668 0.78591 0.80478 0.82295 1.20303 1.21313 1.20278 1.21563 0.90869 0.93072 0.96966 1.22050 1.07766 1.01638 0.93934 1.17173 0.81220 0.80514 0.89576 1.90983 1.50881 1.68162 1.33016 0.95314 0.90910 0.90996 0.91161 0.90913 0.95260 0.89607 0.94066 0.87047 0.89118 0.82039 0.75456 0.88759 0.88792 0.91752 0.91674 0.93399 0.93450 0.96610 0.96566 0.92962 0.84354 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.06 0.57 0.73 16 2 N -0.54 -3.74 5.02 -251.25 -1.26 -5.00 16 3 C 0.02 0.08 9.32 60.07 0.56 0.64 16 4 C 0.04 0.31 5.28 -3.82 -0.02 0.29 16 5 C 0.10 0.67 5.26 -4.04 -0.02 0.64 16 6 N -0.49 -4.17 2.59 -119.58 -0.31 -4.48 16 7 C 0.11 0.78 10.20 -16.57 -0.17 0.61 16 8 C 0.05 0.39 5.77 -83.88 -0.48 -0.09 16 9 N -0.68 -5.29 5.29 -10.01 -0.05 -5.34 16 10 C 0.51 6.02 7.69 -10.99 -0.08 5.93 16 11 O -0.52 -8.42 15.10 5.53 0.08 -8.34 16 12 C -0.14 -1.52 5.70 -27.88 -0.16 -1.68 16 13 C -0.10 -1.72 4.50 -26.73 -0.12 -1.84 16 14 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.00 -0.02 8.92 -39.35 -0.35 -0.37 16 25 C -0.23 -2.46 9.98 -39.41 -0.39 -2.85 16 26 C 0.51 5.99 7.40 -15.47 -0.11 5.88 16 27 O -0.55 -8.17 16.63 4.83 0.08 -8.09 16 28 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.07 0.26 6.47 -51.93 -0.34 -0.08 16 32 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 34 H 0.09 0.82 8.06 -51.93 -0.42 0.41 16 35 H 0.04 0.30 8.12 -51.92 -0.42 -0.12 16 36 H 0.11 0.95 7.38 -51.93 -0.38 0.57 16 37 H 0.09 0.36 6.42 -51.93 -0.33 0.03 16 38 H 0.16 0.58 8.04 -52.49 -0.42 0.16 16 39 H 0.41 1.70 8.83 -40.82 -0.36 1.34 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 43 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.14 1.40 7.93 -52.49 -0.42 0.98 16 50 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 414.12 15.07 6.24 6.24 Total: -1.00 -36.67 414.12 -9.52 -46.18 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.54 Total: -3.69 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.47 Total: -7.62 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.89 Total: -41.28 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.16 Total: -16.43 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.67 -9.52 -46.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.349 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds