Wall clock time and date at job start Tue Mar 31 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99918 * 2 1 4 4 C 1.46899 * 110.99793 * 123.94998 * 2 1 3 5 5 C 1.53002 * 109.47311 * 170.00424 * 4 2 1 6 6 N 1.46496 * 109.47214 * 180.02562 * 5 4 2 7 7 C 1.35947 * 119.60387 * 269.72730 * 6 5 4 8 8 C 1.35887 * 120.59505 * 179.72215 * 7 6 5 9 9 N 1.40380 * 120.09229 * 180.25212 * 8 7 6 10 10 C 1.34771 * 120.00571 * 122.57372 * 9 8 7 11 11 O 1.21306 * 119.99425 * 4.82292 * 10 9 8 12 12 C 1.50696 * 120.00432 * 184.81640 * 10 9 8 13 13 C 1.53004 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46796 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46462 * 180.02562 * 14 13 12 16 16 C 1.50705 * 109.46879 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99914 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00262 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99762 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47140 * 60.00048 * 20 18 16 22 22 H 1.48498 * 109.47197 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47394 * 300.00045 * 20 18 16 24 24 C 1.40637 * 119.82447 * 0.57006 * 8 7 6 25 25 C 1.36356 * 119.24233 * 359.70417 * 24 8 7 26 26 C 1.34634 * 119.61200 * 90.00003 * 6 5 4 27 27 O 1.22092 * 119.91959 * 359.97438 * 26 6 5 28 28 H 1.09002 * 109.47789 * 296.05022 * 1 2 3 29 29 H 1.09000 * 109.47017 * 56.05113 * 1 2 3 30 30 H 1.09002 * 109.47049 * 176.04862 * 1 2 3 31 31 H 1.08992 * 109.47214 * 183.95178 * 3 2 1 32 32 H 1.09004 * 109.46817 * 303.94789 * 3 2 1 33 33 H 1.09004 * 109.47320 * 63.94631 * 3 2 1 34 34 H 1.08996 * 109.47611 * 50.00046 * 4 2 1 35 35 H 1.09008 * 109.47246 * 290.00154 * 4 2 1 36 36 H 1.08999 * 109.46824 * 300.00261 * 5 4 2 37 37 H 1.09003 * 109.46872 * 59.99626 * 5 4 2 38 38 H 1.07994 * 119.70648 * 359.97438 * 7 6 5 39 39 H 0.97008 * 119.99823 * 302.58057 * 9 8 7 40 40 H 1.08995 * 109.47319 * 300.00500 * 12 10 9 41 41 H 1.09007 * 109.46769 * 60.00663 * 12 10 9 42 42 H 1.08995 * 109.47275 * 300.00414 * 13 12 10 43 43 H 1.09000 * 109.46489 * 60.00337 * 13 12 10 44 44 H 1.08995 * 109.47403 * 300.00160 * 14 13 12 45 45 H 1.08993 * 109.47088 * 60.00697 * 14 13 12 46 46 H 1.08995 * 109.47311 * 300.00056 * 15 14 13 47 47 H 1.09000 * 109.47327 * 60.00725 * 15 14 13 48 48 H 0.96991 * 119.99940 * 179.97438 * 19 18 16 49 49 H 1.08001 * 120.37847 * 179.68293 * 24 8 7 50 50 H 1.07998 * 120.30385 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 7 4.0292 -1.7196 2.1048 7 6 4.4666 -1.0633 3.2121 8 6 4.9520 -1.7524 4.2779 9 7 5.3959 -1.0642 5.4181 10 6 4.8480 -1.3285 6.6207 11 8 4.0343 -2.2211 6.7335 12 6 5.2462 -0.5153 7.8253 13 6 4.4842 -1.0167 9.0538 14 6 4.8881 -0.1906 10.2766 15 6 4.1265 -0.6924 11.5051 16 6 4.5248 0.1208 12.7098 17 1 5.2484 0.9162 12.6091 18 6 3.9654 -0.1507 13.9404 19 7 3.0847 -1.1196 14.0630 20 14 4.4586 0.8578 15.4334 21 1 4.1289 2.2863 15.1968 22 1 3.7196 0.3707 16.6258 23 1 5.9188 0.7185 15.6645 24 6 5.0148 -3.1566 4.2331 25 6 4.5794 -3.8076 3.1169 26 6 4.0779 -3.0633 2.0360 27 8 3.6851 -3.6363 1.0320 28 1 -0.3635 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5898 1.9163 -0.8525 33 1 1.7042 1.8725 0.9233 34 1 1.5089 -1.7406 1.1758 35 1 1.7974 -0.2246 2.0629 36 1 3.7024 -1.4965 0.0454 37 1 3.9908 0.0195 0.9325 38 1 4.4240 0.0153 3.2467 39 1 6.0970 -0.3982 5.3404 40 1 6.3178 -0.6190 7.9956 41 1 5.0058 0.5335 7.6513 42 1 3.4126 -0.9133 8.8837 43 1 4.7250 -2.0654 9.2275 44 1 5.9598 -0.2936 10.4468 45 1 4.6470 0.8580 10.1025 46 1 3.0548 -0.5898 11.3351 47 1 4.3681 -1.7410 11.6791 48 1 2.6915 -1.3108 14.9288 49 1 5.4037 -3.7130 5.0731 50 1 4.6194 -4.8856 3.0643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:29 Heat of formation + Delta-G solvation = -69.504440 kcal Electronic energy + Delta-G solvation = -27795.851417 eV Core-core repulsion = 23822.216839 eV Total energy + Delta-G solvation = -3973.634578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.60147 -40.89125 -38.67588 -38.20681 -36.68364 -36.20084 -34.70435 -34.47737 -31.63514 -31.02757 -29.75742 -28.52746 -27.40009 -26.18847 -24.94281 -24.39105 -23.35925 -22.24634 -21.70838 -21.25110 -19.19154 -18.68986 -18.38467 -17.83813 -17.77032 -17.23128 -16.76860 -16.64719 -16.49511 -16.41399 -15.81094 -15.49080 -15.39765 -15.07978 -15.05281 -14.52011 -14.48113 -14.13746 -13.85299 -13.67142 -13.58071 -13.36796 -13.24649 -13.17664 -12.86690 -12.77123 -12.68892 -12.58969 -12.36572 -12.12109 -12.07895 -12.06799 -11.33844 -11.33129 -11.23800 -11.19836 -11.14780 -10.84544 -10.56269 -10.52600 -9.44995 -8.87566 -8.17019 -6.29063 -0.26132 0.61164 1.33676 1.41624 1.45275 1.53116 1.66615 2.20664 2.43301 2.51803 2.96817 3.15724 3.54101 3.60309 3.78147 3.81886 3.85045 3.96926 4.08089 4.13478 4.21099 4.23294 4.28955 4.43827 4.53166 4.61661 4.66173 4.72384 4.74570 4.75338 4.81552 4.91466 4.92310 4.94154 4.95673 5.03982 5.05362 5.24360 5.28069 5.37271 5.43061 5.59546 5.65327 5.81906 5.87579 5.91014 5.91908 5.99323 6.27273 6.49580 6.86574 6.89985 7.27625 7.40609 8.94813 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.001726 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.599692 B =16218.304782 C =17145.886906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.014 3.986 4 C 0.047 3.953 5 C 0.099 3.901 6 N -0.483 5.483 7 C 0.141 3.859 8 C 0.022 3.978 9 N -0.652 5.652 10 C 0.516 3.484 11 O -0.573 6.573 12 C -0.124 4.124 13 C -0.098 4.098 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.003 3.997 25 C -0.256 4.256 26 C 0.504 3.496 27 O -0.594 6.594 28 H 0.029 0.971 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.211 0.789 39 H 0.432 0.568 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.062 0.938 45 H 0.063 0.937 46 H -0.017 1.017 47 H -0.017 1.017 48 H 0.262 0.738 49 H 0.133 0.867 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 8.761 -30.915 32.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.281 5.281 3 C -0.133 4.133 4 C -0.082 4.082 5 C -0.022 4.022 6 N -0.192 5.192 7 C 0.012 3.988 8 C -0.075 4.075 9 N -0.305 5.305 10 C 0.306 3.694 11 O -0.450 6.450 12 C -0.163 4.163 13 C -0.137 4.137 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.020 4.020 25 C -0.278 4.278 26 C 0.308 3.692 27 O -0.480 6.480 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.228 0.772 39 H 0.273 0.727 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.071 0.929 49 H 0.150 0.850 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.848 7.513 -31.802 33.035 hybrid contribution -0.374 0.143 1.889 1.931 sum 4.475 7.656 -29.913 31.199 Atomic orbital electron populations 1.22416 0.86226 1.02391 1.01395 1.61886 1.08961 1.15326 1.41909 1.22611 1.01807 0.87313 1.01573 1.22290 0.94778 0.98454 0.92711 1.22078 0.94106 0.97823 0.88207 1.45339 1.50104 1.07687 1.16107 1.22318 0.91078 1.00507 0.84908 1.16743 1.09948 0.90758 0.90020 1.43067 1.40830 1.42796 1.03770 1.21427 0.79572 0.83432 0.85004 1.90757 1.35367 1.33275 1.85635 1.21668 1.03687 1.01212 0.89758 1.21265 0.99346 0.99116 0.93941 1.21444 0.99777 0.99000 0.93108 1.19076 0.94367 0.94808 0.93788 1.21749 1.24372 1.17509 0.94265 0.91434 1.26097 0.95037 0.96552 1.02827 1.70125 1.30215 1.32200 1.25320 0.85453 0.78677 0.78992 0.77625 1.18871 1.21302 1.18898 1.21626 0.89937 0.94229 0.96184 1.21990 1.09628 1.01794 0.94433 1.17312 0.81104 0.81698 0.89134 1.90950 1.53182 1.69311 1.34545 0.95245 0.89674 0.92104 0.89624 0.90312 0.94805 0.92740 0.93425 0.88893 0.84924 0.77209 0.72737 0.85716 0.85500 0.93957 0.93929 0.91930 0.91874 0.99824 0.99823 0.92939 0.84954 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.57 127.69 1.22 1.50 16 2 N -0.56 -6.90 5.02 -948.83 -4.76 -11.67 16 3 C 0.01 0.10 9.32 127.69 1.19 1.29 16 4 C 0.05 0.65 5.28 86.30 0.46 1.11 16 5 C 0.10 1.16 5.26 86.38 0.45 1.61 16 6 N -0.48 -7.44 2.59 -650.37 -1.68 -9.12 16 7 C 0.14 1.44 10.20 83.51 0.85 2.29 16 8 C 0.02 0.33 5.77 37.81 0.22 0.55 16 9 N -0.65 -7.77 5.29 -303.97 -1.61 -9.38 16 10 C 0.52 10.88 7.69 87.66 0.67 11.56 16 11 O -0.57 -18.58 15.10 -3.11 -0.05 -18.63 16 12 C -0.12 -2.33 5.70 29.85 0.17 -2.16 16 13 C -0.10 -3.19 4.50 30.60 0.14 -3.05 16 14 C -0.10 -3.63 5.15 30.60 0.16 -3.47 16 15 C 0.02 0.89 4.97 29.85 0.15 1.04 16 16 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 18 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 19 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 20 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 C 0.00 0.07 8.92 22.42 0.20 0.27 16 25 C -0.26 -5.73 9.98 22.38 0.22 -5.51 16 26 C 0.50 12.09 7.40 84.81 0.63 12.72 16 27 O -0.59 -18.82 16.63 -5.62 -0.09 -18.91 16 28 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.09 0.29 6.47 -2.39 -0.02 0.27 16 32 H 0.08 0.44 8.12 -2.38 -0.02 0.43 16 33 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.05 1.10 8.06 -2.39 -0.02 1.08 16 35 H 0.05 0.60 8.12 -2.38 -0.02 0.58 16 36 H 0.09 1.53 7.38 -2.39 -0.02 1.51 16 37 H 0.13 0.46 6.42 -2.39 -0.02 0.44 16 38 H 0.21 0.13 8.04 -2.91 -0.02 0.11 16 39 H 0.43 1.33 8.83 -92.70 -0.82 0.51 16 40 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 1.64 8.14 -2.38 -0.02 1.63 16 42 H 0.04 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.04 1.54 8.10 -2.39 -0.02 1.53 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H 0.26 15.36 8.31 -92.72 -0.77 14.59 16 49 H 0.13 2.75 7.93 -2.91 -0.02 2.73 16 50 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -85.99 414.12 1.64 -84.35 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 0.10 Total: 6.14 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 7.43 Total: -10.65 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -7.77 Total: -88.33 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.14 Total: -37.54 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -85.99 1.64 -84.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.846 kcal (2) G-P(sol) polarization free energy of solvation -85.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds