Wall clock time and date at job start Tue Mar 31 2020 18:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99652 * 2 1 4 4 C 1.46902 * 110.99808 * 123.95491 * 2 1 3 5 5 C 1.53000 * 109.47101 * 66.05019 * 4 2 1 6 6 O 1.42902 * 109.47099 * 64.99471 * 5 4 2 7 7 C 1.35681 * 116.99739 * 179.97438 * 6 5 4 8 8 C 1.38662 * 119.64596 * 180.02562 * 7 6 5 9 9 C 1.39135 * 119.02531 * 180.27521 * 8 7 6 10 10 N 1.39564 * 120.82920 * 179.72233 * 9 8 7 11 11 C 1.34769 * 120.00081 * 212.44713 * 10 9 8 12 12 O 1.21284 * 119.99925 * 5.25870 * 11 10 9 13 13 C 1.50701 * 120.00176 * 185.26092 * 11 10 9 14 14 C 1.52999 * 109.47073 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46709 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46688 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47071 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99912 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00147 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99621 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99972 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47057 * 90.00181 * 21 19 17 23 23 H 1.48504 * 109.46999 * 209.99998 * 21 19 17 24 24 H 1.48491 * 109.47121 * 330.00020 * 21 19 17 25 25 C 1.39565 * 118.33963 * 359.46413 * 9 8 7 26 26 C 1.37804 * 119.20323 * 0.56339 * 25 9 8 27 27 N 1.32057 * 120.90730 * 359.69453 * 26 25 9 28 28 H 1.09003 * 109.47266 * 296.04249 * 1 2 3 29 29 H 1.08994 * 109.47387 * 56.04159 * 1 2 3 30 30 H 1.08999 * 109.47382 * 176.04643 * 1 2 3 31 31 H 1.08991 * 109.46916 * 183.95238 * 3 2 1 32 32 H 1.08998 * 109.47274 * 303.95695 * 3 2 1 33 33 H 1.09003 * 109.46508 * 63.95704 * 3 2 1 34 34 H 1.08997 * 109.46996 * 306.04185 * 4 2 1 35 35 H 1.09003 * 109.46349 * 186.04674 * 4 2 1 36 36 H 1.09005 * 109.46705 * 304.99554 * 5 4 2 37 37 H 1.08994 * 109.46910 * 184.99315 * 5 4 2 38 38 H 1.08001 * 120.49225 * 0.02562 * 8 7 6 39 39 H 0.96996 * 120.00003 * 32.44354 * 10 9 8 40 40 H 1.08994 * 109.46911 * 299.99767 * 13 11 10 41 41 H 1.09001 * 109.47059 * 59.99658 * 13 11 10 42 42 H 1.08994 * 109.47402 * 299.99882 * 14 13 11 43 43 H 1.09001 * 109.47118 * 60.00110 * 14 13 11 44 44 H 1.09002 * 109.46775 * 299.99743 * 15 14 13 45 45 H 1.08996 * 109.47197 * 60.00527 * 15 14 13 46 46 H 1.09002 * 109.46979 * 299.99222 * 16 15 14 47 47 H 1.08993 * 109.48059 * 59.99856 * 16 15 14 48 48 H 0.97008 * 119.99578 * 179.97438 * 20 19 17 49 49 H 1.08004 * 120.39617 * 180.25946 * 25 9 8 50 50 H 1.08001 * 119.54830 * 179.72696 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2427 0.9703 6 8 2.2957 -2.7695 -0.1801 7 6 2.0787 -4.0767 -0.4718 8 6 2.6962 -4.6448 -1.5758 9 6 2.4600 -5.9848 -1.8663 10 7 3.0573 -6.5932 -2.9712 11 6 2.4098 -7.5723 -3.6333 12 8 1.2712 -7.8594 -3.3296 13 6 3.1003 -8.3103 -4.7511 14 6 2.1522 -9.3627 -5.3295 15 6 2.8537 -10.1125 -6.4640 16 6 1.9054 -11.1644 -7.0428 17 6 2.5964 -11.9033 -8.1597 18 1 3.6104 -11.6479 -8.4300 19 6 1.9342 -12.9055 -8.8366 20 7 2.5371 -13.5500 -9.8117 21 14 0.1807 -13.3478 -8.3687 22 1 -0.7663 -12.5255 -9.1639 23 1 -0.0582 -14.7867 -8.6478 24 1 -0.0275 -13.0829 -6.9225 25 6 1.6153 -6.7069 -1.0219 26 6 1.0383 -6.0710 0.0560 27 7 1.2796 -4.7958 0.3001 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0708 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9234 34 1 1.5611 -0.3872 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 0.5532 -2.3389 0.8432 37 1 1.9440 -2.7964 1.8555 38 1 3.3477 -4.0547 -2.2034 39 1 3.9385 -6.3113 -3.2627 40 1 3.3813 -7.6050 -5.5331 41 1 3.9944 -8.8001 -4.3652 42 1 1.8716 -10.0680 -4.5474 43 1 1.2580 -8.8733 -5.7153 44 1 3.1346 -9.4073 -7.2462 45 1 3.7477 -10.6020 -6.0777 46 1 1.6241 -11.8696 -6.2607 47 1 1.0115 -10.6747 -7.4291 48 1 2.0713 -14.2553 -10.2876 49 1 1.4123 -7.7501 -1.2138 50 1 0.3802 -6.6233 0.7104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588662720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:17 Heat of formation + Delta-G solvation = -43.761449 kcal Electronic energy + Delta-G solvation = -27280.895895 eV Core-core repulsion = 23308.377616 eV Total energy + Delta-G solvation = -3972.518278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20160 -40.02461 -38.58408 -37.27474 -35.55525 -35.01785 -32.67480 -31.65142 -31.23728 -29.91996 -29.77654 -28.07444 -26.25160 -24.94999 -23.79694 -23.50484 -22.06367 -21.26991 -20.52890 -20.08337 -18.95263 -17.51463 -16.95480 -16.88794 -16.64269 -16.30606 -16.06080 -15.68831 -15.57778 -15.37567 -15.07950 -14.59292 -14.23060 -14.13531 -13.95317 -13.77175 -13.53846 -12.99474 -12.84749 -12.69139 -12.57603 -12.36431 -12.21528 -12.19870 -12.15051 -11.79674 -11.60325 -11.28336 -11.16261 -11.02716 -10.79973 -10.59176 -10.35200 -9.90252 -9.79449 -9.67893 -9.48283 -9.14275 -8.99176 -8.85387 -8.68514 -8.50777 -6.01933 -3.99641 0.85659 1.04210 2.40448 2.47787 2.98230 3.34247 3.41457 3.42287 3.46823 3.58881 4.08670 4.41820 4.43927 4.48733 4.56345 4.71593 4.75721 4.82649 4.88337 4.95245 4.96447 5.05866 5.08671 5.12533 5.16366 5.16940 5.28862 5.32906 5.33374 5.40676 5.51363 5.57065 5.64457 5.84191 5.88565 5.94977 6.06518 6.31634 6.38383 6.47699 6.50350 6.61978 6.75560 6.94543 7.01994 7.05688 7.34992 7.47794 7.65367 7.82576 7.86090 8.56467 9.02895 9.61354 11.11527 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.001501 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.245135 B =18650.980333 C =18823.542019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.052 3.948 5 C 0.076 3.924 6 O -0.290 6.290 7 C 0.340 3.660 8 C -0.226 4.226 9 C 0.231 3.769 10 N -0.676 5.676 11 C 0.515 3.485 12 O -0.508 6.508 13 C -0.137 4.137 14 C -0.108 4.108 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.521 4.521 18 H 0.071 0.929 19 C 0.065 3.935 20 N -0.905 5.905 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.215 4.215 26 C 0.156 3.844 27 N -0.558 5.558 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.143 0.857 39 H 0.416 0.584 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.016 0.984 47 H 0.011 0.989 48 H 0.262 0.738 49 H 0.148 0.852 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 28.288 25.497 38.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.266 5.266 3 C -0.123 4.123 4 C -0.076 4.076 5 C 0.000 4.000 6 O -0.196 6.196 7 C 0.161 3.839 8 C -0.249 4.249 9 C 0.128 3.872 10 N -0.322 5.322 11 C 0.304 3.696 12 O -0.381 6.381 13 C -0.177 4.177 14 C -0.146 4.146 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.559 4.559 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.545 5.545 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.238 4.238 26 C 0.001 3.999 27 N -0.284 5.284 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.161 0.839 39 H 0.252 0.748 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.030 0.970 48 H 0.072 0.928 49 H 0.166 0.834 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.052 28.250 25.664 38.167 hybrid contribution -0.479 -0.164 0.120 0.521 sum -0.427 28.086 25.784 38.129 Atomic orbital electron populations 1.22480 0.87233 1.02614 1.00590 1.61951 1.08074 1.13892 1.42689 1.22390 1.00960 0.88461 1.00523 1.22265 1.01594 0.91708 0.92041 1.22653 0.97615 0.92656 0.87029 1.86307 1.66742 1.19912 1.46657 1.19430 0.90053 0.84639 0.89787 1.20613 1.09368 0.93625 1.01313 1.17682 0.92825 0.90267 0.86445 1.43719 1.21618 1.38003 1.28901 1.21416 0.86587 0.78542 0.83082 1.90736 1.17513 1.63951 1.65883 1.21829 1.00831 0.99350 0.95694 1.21521 0.97727 0.96295 0.99016 1.21480 0.99048 0.97947 0.95565 1.19574 0.95228 0.94189 0.96291 1.21180 1.01665 1.17437 1.15593 0.91091 1.25037 0.97991 0.95864 0.94651 1.69923 1.37621 1.24153 1.22758 0.86777 0.85382 0.77469 0.79683 1.20320 1.21433 1.18922 1.22013 1.02659 1.02780 0.96299 1.22243 0.94908 0.88592 0.94143 1.67373 1.19627 1.09325 1.32042 0.95578 0.91121 0.91092 0.91169 0.91168 0.95721 0.92527 0.89555 0.91359 0.91138 0.83925 0.74757 0.88397 0.88283 0.91610 0.91618 0.92755 0.92719 0.96600 0.97036 0.92801 0.83407 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.33 60.07 0.56 0.68 16 2 N -0.54 -3.94 4.97 -251.26 -1.25 -5.19 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.05 0.32 5.34 -3.82 -0.02 0.30 16 5 C 0.08 0.60 5.36 37.16 0.20 0.80 16 6 O -0.29 -3.01 10.06 -18.74 -0.19 -3.20 16 7 C 0.34 3.77 7.48 -17.17 -0.13 3.64 16 8 C -0.23 -2.31 9.98 -39.09 -0.39 -2.70 16 9 C 0.23 2.50 6.32 -83.51 -0.53 1.97 16 10 N -0.68 -6.31 5.35 -9.72 -0.05 -6.36 16 11 C 0.51 6.22 7.60 -10.99 -0.08 6.13 16 12 O -0.51 -8.06 13.69 5.55 0.08 -7.99 16 13 C -0.14 -1.53 5.70 -27.88 -0.16 -1.69 16 14 C -0.11 -1.68 4.50 -26.73 -0.12 -1.80 16 15 C -0.10 -1.94 5.15 -26.73 -0.14 -2.07 16 16 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 17 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 18 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 21 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 25 C -0.21 -2.43 8.73 -39.25 -0.34 -2.78 16 26 C 0.16 1.60 11.17 -17.61 -0.20 1.40 16 27 N -0.56 -6.19 9.21 -13.41 -0.12 -6.31 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 31 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.02 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 35 H 0.09 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 37 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.42 2.43 8.82 -40.82 -0.36 2.07 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 47 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.15 1.80 6.48 -52.48 -0.34 1.46 16 50 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -35.23 409.72 -9.03 -44.27 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.46 Total: -2.15 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.32 Total: -9.34 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.65 Total: -45.26 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.11 Total: -11.18 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.23 -9.03 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588662720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.506 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds