Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99652 * 2 1 4 4 C 1.46902 * 110.99808 * 123.95491 * 2 1 3 5 5 C 1.53000 * 109.47101 * 66.05019 * 4 2 1 6 6 O 1.42902 * 109.47099 * 64.99471 * 5 4 2 7 7 C 1.35681 * 116.99739 * 179.97438 * 6 5 4 8 8 C 1.38662 * 119.64596 * 180.02562 * 7 6 5 9 9 C 1.39135 * 119.02531 * 180.27521 * 8 7 6 10 10 N 1.39564 * 120.82920 * 179.72233 * 9 8 7 11 11 C 1.34769 * 120.00081 * 212.44713 * 10 9 8 12 12 O 1.21284 * 119.99925 * 5.25870 * 11 10 9 13 13 C 1.50701 * 120.00176 * 185.26092 * 11 10 9 14 14 C 1.52999 * 109.47073 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.46709 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46688 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47071 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99912 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00147 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99621 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99972 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47057 * 90.00181 * 21 19 17 23 23 H 1.48504 * 109.46999 * 209.99998 * 21 19 17 24 24 H 1.48491 * 109.47121 * 330.00020 * 21 19 17 25 25 C 1.39565 * 118.33963 * 359.46413 * 9 8 7 26 26 C 1.37804 * 119.20323 * 0.56339 * 25 9 8 27 27 N 1.32057 * 120.90730 * 359.69453 * 26 25 9 28 28 H 1.09003 * 109.47266 * 296.04249 * 1 2 3 29 29 H 1.08994 * 109.47387 * 56.04159 * 1 2 3 30 30 H 1.08999 * 109.47382 * 176.04643 * 1 2 3 31 31 H 1.08991 * 109.46916 * 183.95238 * 3 2 1 32 32 H 1.08998 * 109.47274 * 303.95695 * 3 2 1 33 33 H 1.09003 * 109.46508 * 63.95704 * 3 2 1 34 34 H 1.08997 * 109.46996 * 306.04185 * 4 2 1 35 35 H 1.09003 * 109.46349 * 186.04674 * 4 2 1 36 36 H 1.09005 * 109.46705 * 304.99554 * 5 4 2 37 37 H 1.08994 * 109.46910 * 184.99315 * 5 4 2 38 38 H 1.08001 * 120.49225 * 0.02562 * 8 7 6 39 39 H 0.96996 * 120.00003 * 32.44354 * 10 9 8 40 40 H 1.08994 * 109.46911 * 299.99767 * 13 11 10 41 41 H 1.09001 * 109.47059 * 59.99658 * 13 11 10 42 42 H 1.08994 * 109.47402 * 299.99882 * 14 13 11 43 43 H 1.09001 * 109.47118 * 60.00110 * 14 13 11 44 44 H 1.09002 * 109.46775 * 299.99743 * 15 14 13 45 45 H 1.08996 * 109.47197 * 60.00527 * 15 14 13 46 46 H 1.09002 * 109.46979 * 299.99222 * 16 15 14 47 47 H 1.08993 * 109.48059 * 59.99856 * 16 15 14 48 48 H 0.97008 * 119.99578 * 179.97438 * 20 19 17 49 49 H 1.08004 * 120.39617 * 180.25946 * 25 9 8 50 50 H 1.08001 * 119.54830 * 179.72696 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2427 0.9703 6 8 2.2957 -2.7695 -0.1801 7 6 2.0787 -4.0767 -0.4718 8 6 2.6962 -4.6448 -1.5758 9 6 2.4600 -5.9848 -1.8663 10 7 3.0573 -6.5932 -2.9712 11 6 2.4098 -7.5723 -3.6333 12 8 1.2712 -7.8594 -3.3296 13 6 3.1003 -8.3103 -4.7511 14 6 2.1522 -9.3627 -5.3295 15 6 2.8537 -10.1125 -6.4640 16 6 1.9054 -11.1644 -7.0428 17 6 2.5964 -11.9033 -8.1597 18 1 3.6104 -11.6479 -8.4300 19 6 1.9342 -12.9055 -8.8366 20 7 2.5371 -13.5500 -9.8117 21 14 0.1807 -13.3478 -8.3687 22 1 -0.7663 -12.5255 -9.1639 23 1 -0.0582 -14.7867 -8.6478 24 1 -0.0275 -13.0829 -6.9225 25 6 1.6153 -6.7069 -1.0219 26 6 1.0383 -6.0710 0.0560 27 7 1.2796 -4.7958 0.3001 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0708 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9234 34 1 1.5611 -0.3872 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 0.5532 -2.3389 0.8432 37 1 1.9440 -2.7964 1.8555 38 1 3.3477 -4.0547 -2.2034 39 1 3.9385 -6.3113 -3.2627 40 1 3.3813 -7.6050 -5.5331 41 1 3.9944 -8.8001 -4.3652 42 1 1.8716 -10.0680 -4.5474 43 1 1.2580 -8.8733 -5.7153 44 1 3.1346 -9.4073 -7.2462 45 1 3.7477 -10.6020 -6.0777 46 1 1.6241 -11.8696 -6.2607 47 1 1.0115 -10.6747 -7.4291 48 1 2.0713 -14.2553 -10.2876 49 1 1.4123 -7.7501 -1.2138 50 1 0.3802 -6.6233 0.7104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588662720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = -69.569572 kcal Electronic energy + Delta-G solvation = -27282.015019 eV Core-core repulsion = 23308.377616 eV Total energy + Delta-G solvation = -3973.637403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02752 -40.87850 -39.27217 -37.88639 -36.77566 -36.20015 -34.61732 -32.57555 -32.17458 -31.27932 -30.43611 -28.52090 -27.79660 -25.63066 -24.63994 -24.52894 -23.26926 -21.94875 -21.70259 -21.43831 -19.72475 -18.84249 -18.39319 -17.72333 -17.51791 -17.21638 -16.87084 -16.59859 -16.31913 -16.12130 -16.00624 -15.70479 -15.55856 -15.28957 -14.86750 -14.67833 -14.44178 -14.33025 -13.88521 -13.71910 -13.52353 -13.48343 -13.26141 -13.11837 -12.86959 -12.71425 -12.65943 -12.34069 -12.20067 -12.08205 -12.01103 -11.74925 -11.72978 -11.53486 -11.32899 -11.26075 -11.12091 -10.74967 -10.58933 -9.80146 -9.50086 -9.30771 -8.28749 -6.31707 0.05038 0.21578 1.35635 1.37134 1.49597 1.52175 1.69239 2.24570 2.36672 2.78160 2.97104 3.07058 3.35655 3.58708 3.88430 3.93891 4.02008 4.06809 4.12890 4.15438 4.16831 4.23700 4.42459 4.45139 4.48724 4.60989 4.62761 4.64461 4.65788 4.73148 4.77893 4.79024 4.82307 4.86637 5.00777 5.02867 5.03924 5.10781 5.15556 5.21413 5.30981 5.55881 5.62975 5.67841 5.70324 6.00766 6.05149 6.27645 6.30585 6.31695 6.76739 6.85494 7.01145 7.33325 8.87831 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.001501 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.245135 B =18650.980333 C =18823.542019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.056 3.944 5 C 0.075 3.925 6 O -0.298 6.298 7 C 0.328 3.672 8 C -0.224 4.224 9 C 0.222 3.778 10 N -0.659 5.659 11 C 0.518 3.482 12 O -0.552 6.552 13 C -0.128 4.128 14 C -0.099 4.099 15 C -0.095 4.095 16 C -0.018 4.018 17 C -0.531 4.531 18 H 0.037 0.963 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.947 3.053 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.251 1.251 25 C -0.228 4.228 26 C 0.154 3.846 27 N -0.566 5.566 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.161 0.839 39 H 0.434 0.566 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.012 0.988 48 H 0.265 0.735 49 H 0.137 0.863 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 29.887 27.003 40.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.122 4.122 4 C -0.072 4.072 5 C 0.000 4.000 6 O -0.205 6.205 7 C 0.149 3.851 8 C -0.247 4.247 9 C 0.118 3.882 10 N -0.306 5.306 11 C 0.308 3.692 12 O -0.428 6.428 13 C -0.167 4.167 14 C -0.137 4.137 15 C -0.132 4.132 16 C -0.055 4.055 17 C -0.569 4.569 18 H 0.056 0.944 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.175 1.175 25 C -0.251 4.251 26 C 0.000 4.000 27 N -0.292 5.292 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.178 0.822 39 H 0.274 0.726 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.155 0.845 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.085 29.894 27.184 40.406 hybrid contribution -0.348 -0.617 -0.351 0.791 sum -0.434 29.277 26.833 39.716 Atomic orbital electron populations 1.22442 0.87045 1.01994 1.01224 1.61943 1.08499 1.15015 1.43429 1.22399 1.01071 0.87638 1.01079 1.22266 1.01908 0.90456 0.92536 1.22789 0.97082 0.93729 0.86414 1.86299 1.67033 1.19583 1.47598 1.19686 0.90239 0.85031 0.90152 1.20763 1.09293 0.93449 1.01233 1.17787 0.93024 0.90601 0.86739 1.43492 1.22119 1.36969 1.28040 1.21505 0.86006 0.78617 0.83055 1.90731 1.19425 1.65385 1.67217 1.21727 1.00218 0.98726 0.96052 1.21310 0.97983 0.96950 0.97506 1.21341 0.98233 0.96966 0.96684 1.19583 0.95995 0.95178 0.94769 1.21573 1.00653 1.17837 1.16849 0.94437 1.25982 1.02747 0.95905 0.94583 1.70066 1.39737 1.25130 1.24266 0.85707 0.79699 0.77428 0.80124 1.19344 1.20835 1.17460 1.22049 1.03430 1.02507 0.97129 1.22610 0.94802 0.88461 0.94162 1.67418 1.19891 1.09592 1.32344 0.94513 0.90974 0.92251 0.90901 0.91032 0.94781 0.90779 0.89167 0.92084 0.90707 0.82156 0.72597 0.85810 0.85647 0.92617 0.92798 0.92359 0.92268 0.96722 0.96930 0.92568 0.84485 0.79846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.33 127.69 1.19 1.44 16 2 N -0.56 -7.51 4.97 -948.84 -4.71 -12.22 16 3 C 0.03 0.24 9.57 127.69 1.22 1.46 16 4 C 0.06 0.62 5.34 86.30 0.46 1.08 16 5 C 0.08 1.12 5.36 71.98 0.39 1.51 16 6 O -0.30 -5.92 10.06 -89.98 -0.91 -6.82 16 7 C 0.33 6.96 7.48 84.72 0.63 7.60 16 8 C -0.22 -4.25 9.98 22.59 0.23 -4.03 16 9 C 0.22 4.50 6.32 38.45 0.24 4.74 16 10 N -0.66 -10.85 5.35 -303.07 -1.62 -12.47 16 11 C 0.52 11.53 7.60 87.66 0.67 12.19 16 12 O -0.55 -17.08 13.69 -3.04 -0.04 -17.12 16 13 C -0.13 -2.48 5.70 29.85 0.17 -2.31 16 14 C -0.10 -2.93 4.50 30.60 0.14 -2.80 16 15 C -0.09 -3.44 5.15 30.60 0.16 -3.28 16 16 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 17 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 18 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 19 C 0.00 0.26 5.47 84.65 0.46 0.73 16 20 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 21 Si 0.95 45.50 27.47 68.60 1.88 47.39 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 25 C -0.23 -5.04 8.73 22.49 0.20 -4.84 16 26 C 0.15 3.05 11.17 84.56 0.94 3.99 16 27 N -0.57 -12.12 9.21 -309.16 -2.85 -14.96 16 28 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 30 H 0.06 0.82 6.37 -2.39 -0.02 0.81 16 31 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 33 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 35 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 36 H 0.06 0.99 6.30 -2.38 -0.02 0.98 16 37 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.43 3.75 8.82 -92.71 -0.82 2.93 16 40 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.75 8.10 -2.39 -0.02 1.73 16 43 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 47 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 48 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 49 H 0.14 3.34 6.48 -2.91 -0.02 3.32 16 50 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -77.09 409.72 -0.43 -77.52 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.05 Total: 12.50 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 7.47 Total: -13.87 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -8.88 Total: -99.58 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.95 Total: -23.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -77.09 -0.43 -77.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588662720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.947 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds