Wall clock time and date at job start Tue Mar 31 2020 18:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38350 * 120.53255 * 104.72262 * 19 18 17 21 21 C 1.38875 * 118.64837 * 179.73579 * 20 19 18 22 22 C 1.38093 * 119.44866 * 0.50874 * 21 20 19 23 23 N 1.32357 * 120.32894 * 359.76349 * 22 21 20 24 24 C 1.32105 * 121.97569 * 359.97438 * 23 22 21 25 25 O 1.35678 * 119.67391 * 180.02562 * 24 23 22 26 26 C 1.51488 * 109.60776 * 179.79798 * 22 21 20 27 27 C 1.54342 * 105.20741 * 342.77540 * 26 22 21 28 28 C 1.51248 * 130.59915 * 180.20108 * 21 20 19 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08004 * 120.67511 * 359.97438 * 20 19 18 44 44 H 0.96698 * 113.99458 * 269.97692 * 25 24 23 45 45 H 1.08994 * 110.29884 * 101.70801 * 26 22 21 46 46 H 1.09001 * 110.29827 * 223.84531 * 26 22 21 47 47 H 1.08997 * 110.82303 * 268.13147 * 27 26 22 48 48 H 1.08998 * 110.99295 * 144.64700 * 27 26 22 49 49 H 1.09000 * 110.31272 * 316.32938 * 28 21 20 50 50 H 1.08995 * 110.31395 * 78.40936 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.7341 -4.7028 -2.2962 21 6 9.0609 -5.0066 -2.0203 22 6 10.0105 -4.0050 -2.0665 23 7 9.6610 -2.7664 -2.3756 24 6 8.4105 -2.4400 -2.6492 25 8 8.1044 -1.1554 -2.9610 26 6 11.3708 -4.5781 -1.7260 27 6 11.0806 -5.9319 -1.0440 28 6 9.7128 -6.3190 -1.6458 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 6.9745 -5.4698 -2.2616 44 1 7.8738 -0.6096 -2.1969 45 1 11.9551 -4.7296 -2.6335 46 1 11.8997 -3.9154 -1.0411 47 1 11.0088 -5.8136 0.0372 48 1 11.8402 -6.6699 -1.3019 49 1 9.1088 -6.8439 -0.9058 50 1 9.8493 -6.9398 -2.5312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591739723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:43 Heat of formation + Delta-G solvation = -53.111818 kcal Electronic energy + Delta-G solvation = -28506.343335 eV Core-core repulsion = 24533.419594 eV Total energy + Delta-G solvation = -3972.923741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15603 -38.43064 -38.00430 -36.22232 -35.46592 -34.92432 -32.93179 -32.45855 -30.37494 -28.92977 -28.08134 -27.28705 -26.12013 -24.40265 -23.59537 -23.08102 -21.56638 -21.38948 -20.88702 -20.04246 -18.48621 -17.51776 -16.65148 -16.41625 -16.18209 -15.85843 -15.42874 -15.19856 -14.79067 -14.66120 -14.53349 -14.29467 -13.97687 -13.57280 -13.39944 -13.29751 -13.22260 -13.03324 -12.90206 -12.43440 -12.37344 -11.96663 -11.84041 -11.74862 -11.62516 -11.58457 -11.38673 -11.27320 -11.13354 -10.93233 -10.70195 -10.60501 -10.36597 -9.94657 -9.75583 -9.66130 -9.44551 -9.10365 -8.71269 -8.50733 -8.39422 -7.19391 -5.98955 -3.99350 0.74415 0.97841 3.14938 3.33963 3.41267 3.46359 3.48983 3.91864 4.11575 4.18862 4.46443 4.54270 4.56430 4.61937 4.65051 4.76053 4.83549 4.93924 5.08959 5.16736 5.27988 5.29979 5.34863 5.36338 5.40098 5.40732 5.50968 5.55834 5.57830 5.64653 5.70766 5.73812 5.78909 5.88216 5.91311 6.04205 6.07913 6.29141 6.35254 6.51903 6.71346 6.85165 7.27899 7.31078 7.33650 7.47909 7.79334 7.83034 8.04894 8.12451 8.22840 8.58166 9.08112 9.64465 11.12149 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.002124 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.291864 B =13178.875129 C =13915.409898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.112 0.888 15 O -0.541 6.541 16 C 0.031 3.969 17 N -0.679 5.679 18 C 0.110 3.890 19 C -0.150 4.150 20 C -0.046 4.046 21 C -0.166 4.166 22 C 0.142 3.858 23 N -0.503 5.503 24 C 0.345 3.655 25 O -0.476 6.476 26 C -0.072 4.072 27 C -0.119 4.119 28 C -0.076 4.076 29 H 0.011 0.989 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.032 0.968 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.358 0.642 38 H 0.029 0.971 39 H 0.081 0.919 40 H 0.348 0.652 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.134 0.866 44 H 0.410 0.590 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 -23.225 -8.139 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.104 4.104 13 C 0.057 3.943 14 H 0.129 0.871 15 O -0.344 6.344 16 C -0.099 4.099 17 N -0.311 5.311 18 C -0.020 4.020 19 C -0.154 4.154 20 C -0.072 4.072 21 C -0.168 4.168 22 C 0.004 3.996 23 N -0.221 5.221 24 C 0.165 3.835 25 O -0.284 6.284 26 C -0.110 4.110 27 C -0.157 4.157 28 C -0.113 4.113 29 H 0.030 0.970 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.203 0.797 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.167 0.833 41 H 0.055 0.945 42 H 0.107 0.893 43 H 0.152 0.848 44 H 0.269 0.731 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.096 0.904 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.814 -21.624 -8.318 26.975 hybrid contribution -2.092 -0.540 0.192 2.169 sum 11.722 -22.165 -8.126 26.357 Atomic orbital electron populations 1.22191 0.88887 0.98507 1.01166 1.62042 1.06481 1.17915 1.39116 1.19790 0.95532 0.81381 0.96549 1.21186 1.34554 0.96794 1.01677 0.91884 1.24994 0.95369 0.97409 0.96968 1.69965 1.38523 1.11382 1.34013 0.86452 0.78145 0.79234 0.83649 1.19698 1.20997 1.21201 1.22672 0.95871 0.98058 0.93787 1.21987 0.95226 0.93548 0.83584 0.87054 1.86708 1.73809 1.34353 1.39507 1.22692 0.87926 0.99063 1.00237 1.60307 1.18511 1.47279 1.04976 1.20682 0.89040 0.96948 0.95281 1.20727 0.96748 0.93851 1.04078 1.20880 0.95315 0.95498 0.95468 1.21392 0.94105 0.97971 1.03377 1.21555 0.96682 0.87172 0.94215 1.66296 1.20782 1.21608 1.13455 1.18696 0.86287 0.86153 0.92396 1.84666 1.88596 1.18491 1.36689 1.21028 0.92236 0.96062 1.01630 1.22314 0.96711 0.96083 1.00557 1.20925 0.95694 0.93619 1.01076 0.97027 0.94015 0.90940 0.95022 0.99362 0.93027 0.92369 0.94884 0.79702 0.95302 0.90058 0.83293 0.94475 0.89330 0.84830 0.73070 0.89235 0.89541 0.90474 0.89869 0.90362 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.31 60.07 0.56 1.36 16 2 N -0.53 -11.40 4.59 -244.37 -1.12 -12.52 16 3 C 0.19 5.05 4.55 -4.98 -0.02 5.02 16 4 C -0.50 -14.39 8.58 -34.44 -0.30 -14.69 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.03 0.44 4.65 -3.82 -0.02 0.42 16 13 C 0.12 1.82 3.31 -26.73 -0.09 1.73 16 14 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 15 O -0.54 -8.55 12.58 -35.23 -0.44 -8.99 16 16 C 0.03 0.36 5.39 -3.82 -0.02 0.34 16 17 N -0.68 -7.79 6.49 -115.06 -0.75 -8.54 16 18 C 0.11 1.12 5.45 -4.98 -0.03 1.09 16 19 C -0.15 -1.66 5.42 -104.34 -0.57 -2.22 16 20 C -0.05 -0.43 9.80 -39.30 -0.39 -0.81 16 21 C -0.17 -1.54 6.16 -104.17 -0.64 -2.18 16 22 C 0.14 1.55 7.31 -82.03 -0.60 0.95 16 23 N -0.50 -6.85 10.38 -9.25 -0.10 -6.94 16 24 C 0.34 4.52 7.72 -17.20 -0.13 4.38 16 25 O -0.48 -6.24 12.92 -18.74 -0.24 -6.49 16 26 C -0.07 -0.53 6.77 -26.79 -0.18 -0.71 16 27 C -0.12 -0.62 7.08 -25.31 -0.18 -0.79 16 28 C -0.08 -0.45 6.77 -26.90 -0.18 -0.63 16 29 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 31 H 0.07 1.50 7.01 -51.93 -0.36 1.14 16 32 H 0.03 0.89 6.60 -51.93 -0.34 0.54 16 33 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 36 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 37 H 0.36 4.19 9.05 45.56 0.41 4.60 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.35 4.06 8.11 -39.29 -0.32 3.74 16 41 H 0.04 0.32 8.00 -51.93 -0.42 -0.09 16 42 H 0.09 0.97 8.02 -51.93 -0.42 0.55 16 43 H 0.13 0.93 8.05 -52.48 -0.42 0.50 16 44 H 0.41 4.39 9.06 45.56 0.41 4.80 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -34.20 405.76 -10.45 -44.65 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.76 Total: 7.30 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.88 Total: -5.30 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -1.23 Total: -54.32 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.69 Total: -15.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.20 -10.45 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591739723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.458 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds