Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38350 * 120.53255 * 104.72262 * 19 18 17 21 21 C 1.38875 * 118.64837 * 179.73579 * 20 19 18 22 22 C 1.38093 * 119.44866 * 0.50874 * 21 20 19 23 23 N 1.32357 * 120.32894 * 359.76349 * 22 21 20 24 24 C 1.32105 * 121.97569 * 359.97438 * 23 22 21 25 25 O 1.35678 * 119.67391 * 180.02562 * 24 23 22 26 26 C 1.51488 * 109.60776 * 179.79798 * 22 21 20 27 27 C 1.54342 * 105.20741 * 342.77540 * 26 22 21 28 28 C 1.51248 * 130.59915 * 180.20108 * 21 20 19 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08004 * 120.67511 * 359.97438 * 20 19 18 44 44 H 0.96698 * 113.99458 * 269.97692 * 25 24 23 45 45 H 1.08994 * 110.29884 * 101.70801 * 26 22 21 46 46 H 1.09001 * 110.29827 * 223.84531 * 26 22 21 47 47 H 1.08997 * 110.82303 * 268.13147 * 27 26 22 48 48 H 1.08998 * 110.99295 * 144.64700 * 27 26 22 49 49 H 1.09000 * 110.31272 * 316.32938 * 28 21 20 50 50 H 1.08995 * 110.31395 * 78.40936 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.7341 -4.7028 -2.2962 21 6 9.0609 -5.0066 -2.0203 22 6 10.0105 -4.0050 -2.0665 23 7 9.6610 -2.7664 -2.3756 24 6 8.4105 -2.4400 -2.6492 25 8 8.1044 -1.1554 -2.9610 26 6 11.3708 -4.5781 -1.7260 27 6 11.0806 -5.9319 -1.0440 28 6 9.7128 -6.3190 -1.6458 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 6.9745 -5.4698 -2.2616 44 1 7.8738 -0.6096 -2.1969 45 1 11.9551 -4.7296 -2.6335 46 1 11.8997 -3.9154 -1.0411 47 1 11.0088 -5.8136 0.0372 48 1 11.8402 -6.6699 -1.3019 49 1 9.1088 -6.8439 -0.9058 50 1 9.8493 -6.9398 -2.5312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591739723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = -83.835937 kcal Electronic energy + Delta-G solvation = -28507.675633 eV Core-core repulsion = 24533.419594 eV Total energy + Delta-G solvation = -3974.256039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92177 -39.61031 -38.92023 -37.54784 -36.53084 -35.83585 -34.60579 -33.78037 -31.43371 -29.96976 -29.25550 -28.69439 -27.25170 -25.78301 -24.65945 -24.29105 -22.77315 -22.16863 -21.74379 -21.44165 -19.38943 -18.62744 -18.30872 -17.55098 -17.13636 -17.03289 -16.56775 -16.36799 -16.10332 -15.82746 -15.59297 -15.48213 -15.21788 -14.87539 -14.66218 -14.21471 -14.06161 -13.91942 -13.81720 -13.67957 -13.55827 -13.16020 -13.04451 -12.96621 -12.75106 -12.60103 -12.56642 -12.52207 -12.35880 -12.30900 -12.13822 -12.07735 -11.75150 -11.52609 -11.31487 -10.83901 -10.66370 -10.61425 -10.29231 -9.48899 -9.34576 -8.94487 -8.20513 -6.29881 -0.05885 0.20259 1.39002 1.40556 1.53838 2.35916 2.40063 2.70486 2.99250 3.12173 3.35032 3.48774 3.55922 3.71710 3.83176 3.94064 3.97518 4.04823 4.16683 4.18184 4.21806 4.34930 4.40597 4.46105 4.53760 4.59479 4.63416 4.72327 4.78844 4.81054 4.82633 4.88101 4.92154 5.00482 5.06217 5.08313 5.13464 5.18392 5.24036 5.26840 5.31718 5.34853 5.57493 5.65226 5.97254 6.07436 6.35022 6.40551 6.58109 6.65984 6.86536 6.96254 7.07113 7.39522 8.90768 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.002124 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.291864 B =13178.875129 C =13915.409898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.026 3.974 13 C 0.127 3.873 14 H 0.062 0.938 15 O -0.558 6.558 16 C 0.046 3.954 17 N -0.690 5.690 18 C 0.119 3.881 19 C -0.155 4.155 20 C -0.046 4.046 21 C -0.164 4.164 22 C 0.116 3.884 23 N -0.540 5.540 24 C 0.312 3.688 25 O -0.492 6.492 26 C -0.074 4.074 27 C -0.111 4.111 28 C -0.073 4.073 29 H 0.007 0.993 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.003 0.997 33 H -0.042 1.042 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.027 0.973 37 H 0.379 0.621 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.348 0.652 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.165 0.835 44 H 0.412 0.588 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 -26.637 -7.547 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.202 1.202 12 C -0.104 4.104 13 C 0.067 3.933 14 H 0.080 0.920 15 O -0.364 6.364 16 C -0.084 4.084 17 N -0.323 5.323 18 C -0.010 4.010 19 C -0.158 4.158 20 C -0.072 4.072 21 C -0.166 4.166 22 C -0.022 4.022 23 N -0.260 5.260 24 C 0.133 3.867 25 O -0.300 6.300 26 C -0.112 4.112 27 C -0.148 4.148 28 C -0.110 4.110 29 H 0.025 0.975 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.021 0.979 33 H -0.024 1.024 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.045 0.955 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.182 0.818 44 H 0.272 0.728 45 H 0.117 0.883 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.127 0.873 49 H 0.112 0.888 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.131 -25.073 -7.735 29.341 hybrid contribution -1.837 0.437 -0.010 1.889 sum 11.294 -24.636 -7.745 28.186 Atomic orbital electron populations 1.22218 0.87471 1.00926 0.99981 1.61935 1.07871 1.15073 1.41729 1.19384 0.93710 0.83921 0.94631 1.21512 1.34573 0.97404 1.02462 0.92104 1.25939 0.95117 0.98181 1.00723 1.70094 1.39475 1.11834 1.36143 0.85342 0.78051 0.78219 0.79057 1.18709 1.20530 1.20246 1.22813 0.97095 0.98641 0.91801 1.21672 0.93891 0.92646 0.85123 0.92000 1.86659 1.74492 1.35465 1.39780 1.22452 0.88457 0.99651 0.97812 1.60204 1.18424 1.48144 1.05538 1.20606 0.88846 0.97492 0.94089 1.20814 0.96539 0.94275 1.04201 1.21240 0.96257 0.95318 0.94346 1.21877 0.93865 0.99180 1.01634 1.22265 0.98898 0.86848 0.94148 1.66245 1.21434 1.23519 1.14755 1.19002 0.87053 0.86292 0.94323 1.84637 1.88773 1.19300 1.37325 1.21191 0.90682 0.97127 1.02187 1.22349 0.97084 0.95059 1.00351 1.21049 0.95765 0.91974 1.02213 0.97483 0.89727 0.92840 0.97868 1.02417 0.92767 0.88326 0.95502 0.77310 0.92120 0.90511 0.83252 0.91884 0.90545 0.81777 0.72843 0.88344 0.90016 0.90343 0.87316 0.88806 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.31 127.69 1.19 2.78 16 2 N -0.54 -23.31 4.59 -927.06 -4.25 -27.56 16 3 C 0.21 11.48 4.55 85.56 0.39 11.87 16 4 C -0.52 -30.56 8.58 25.60 0.22 -30.34 16 5 H 0.06 3.52 7.10 -2.91 -0.02 3.50 16 6 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 7 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 8 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 9 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.03 0.84 4.65 86.30 0.40 1.24 16 13 C 0.13 3.96 3.31 30.59 0.10 4.06 16 14 H 0.06 2.56 6.73 -2.39 -0.02 2.55 16 15 O -0.56 -17.04 12.58 -148.98 -1.87 -18.92 16 16 C 0.05 1.03 5.39 86.30 0.47 1.50 16 17 N -0.69 -15.49 6.49 -517.94 -3.36 -18.86 16 18 C 0.12 2.29 5.45 85.56 0.47 2.75 16 19 C -0.15 -3.35 5.42 -19.68 -0.11 -3.46 16 20 C -0.05 -0.77 9.80 22.45 0.22 -0.55 16 21 C -0.16 -2.75 6.16 -19.57 -0.12 -2.87 16 22 C 0.12 2.52 7.31 42.70 0.31 2.83 16 23 N -0.54 -15.44 10.38 -296.12 -3.07 -18.51 16 24 C 0.31 8.61 7.72 84.81 0.66 9.27 16 25 O -0.49 -14.07 12.92 -89.96 -1.16 -15.23 16 26 C -0.07 -1.02 6.77 30.55 0.21 -0.82 16 27 C -0.11 -0.85 7.08 31.51 0.22 -0.63 16 28 C -0.07 -0.63 6.77 30.49 0.21 -0.43 16 29 H 0.01 0.26 8.08 -2.39 -0.02 0.24 16 30 H 0.08 2.45 7.85 -2.39 -0.02 2.43 16 31 H 0.05 2.19 7.01 -2.39 -0.02 2.17 16 32 H 0.00 0.20 6.60 -2.39 -0.02 0.18 16 33 H -0.04 -2.48 8.07 -2.38 -0.02 -2.50 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.10 2.45 7.75 -2.39 -0.02 2.43 16 36 H 0.03 0.92 8.00 -2.39 -0.02 0.91 16 37 H 0.38 7.80 9.05 -74.06 -0.67 7.13 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.35 7.79 8.11 -89.69 -0.73 7.06 16 41 H 0.06 0.90 8.00 -2.38 -0.02 0.88 16 42 H 0.08 1.67 8.02 -2.39 -0.02 1.65 16 43 H 0.16 1.67 8.05 -2.91 -0.02 1.64 16 44 H 0.41 10.12 9.06 -74.06 -0.67 9.45 16 45 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.19 405.76 -7.22 -85.41 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -1.10 Total: 26.01 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.29 Total: -2.43 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -10.40 Total: -122.58 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -3.04 Total: -34.15 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.19 -7.22 -85.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591739723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.575 kcal (2) G-P(sol) polarization free energy of solvation -78.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds