Wall clock time and date at job start Tue Mar 31 2020 18:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46912 * 110.99515 * 2 1 4 4 C 1.50693 * 109.47107 * 293.95476 * 3 2 1 5 5 H 1.08001 * 120.00465 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99839 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99947 * 179.97438 * 6 4 3 8 8 Si 1.86792 * 120.00057 * 0.02562 * 6 4 3 9 9 H 1.48509 * 109.47421 * 89.99781 * 8 6 4 10 10 H 1.48498 * 109.47449 * 209.99935 * 8 6 4 11 11 H 1.48501 * 109.47026 * 329.99820 * 8 6 4 12 12 C 1.46897 * 111.00379 * 123.95294 * 2 1 3 13 13 C 1.52997 * 109.47009 * 163.95818 * 12 2 1 14 14 H 1.09004 * 109.47702 * 59.64520 * 13 12 2 15 15 O 1.42901 * 109.47065 * 299.63973 * 13 12 2 16 16 C 1.53003 * 109.47010 * 179.64558 * 13 12 2 17 17 N 1.46902 * 109.47123 * 184.99847 * 16 13 12 18 18 C 1.46899 * 111.00077 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.47254 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46981 * 179.97438 * 19 18 17 21 21 O 1.21289 * 120.00209 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99818 * 179.97438 * 20 19 18 23 23 C 1.39920 * 119.99986 * 184.56091 * 22 20 19 24 24 C 1.38872 * 120.07469 * 33.47164 * 23 22 20 25 25 C 1.38103 * 119.93423 * 179.97438 * 24 23 22 26 26 C 1.38287 * 120.06842 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.14207 * 0.04564 * 26 25 24 28 28 C 1.38113 * 120.06990 * 359.95198 * 27 26 25 29 29 H 1.09000 * 109.47256 * 301.29249 * 1 2 3 30 30 H 1.09003 * 109.47739 * 61.29757 * 1 2 3 31 31 H 1.09004 * 109.46959 * 181.29552 * 1 2 3 32 32 H 1.09003 * 109.46985 * 53.95631 * 3 2 1 33 33 H 1.09001 * 109.46591 * 173.95397 * 3 2 1 34 34 H 0.96999 * 119.99944 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46811 * 43.96005 * 12 2 1 36 36 H 1.09001 * 109.47077 * 283.95872 * 12 2 1 37 37 H 0.96694 * 114.00519 * 300.00513 * 15 13 12 38 38 H 1.08998 * 109.47173 * 65.00150 * 16 13 12 39 39 H 1.09003 * 109.46986 * 304.99834 * 16 13 12 40 40 H 1.00897 * 110.99919 * 303.95541 * 17 16 13 41 41 H 1.08996 * 109.46975 * 59.99818 * 18 17 16 42 42 H 1.09002 * 109.47409 * 300.00222 * 18 17 16 43 43 H 1.09002 * 109.46650 * 60.00280 * 19 18 17 44 44 H 1.08998 * 109.47063 * 299.99912 * 19 18 17 45 45 H 0.96999 * 119.99687 * 4.55971 * 22 20 19 46 46 H 1.08005 * 120.03219 * 359.70638 * 24 23 22 47 47 H 1.07998 * 119.96605 * 179.97438 * 25 24 23 48 48 H 1.08005 * 119.92890 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.96314 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.03665 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.6367 2.0472 -1.2984 5 1 1.0737 1.5116 -2.0484 6 6 2.0265 3.3496 -1.5284 7 7 1.7140 3.9392 -2.6618 8 14 2.9995 4.2763 -0.2309 9 1 4.4521 4.0640 -0.4558 10 1 2.6913 5.7261 -0.3224 11 1 2.6290 3.7756 1.1172 12 6 1.9955 -0.7659 1.1375 13 6 3.4724 -1.0849 0.8976 14 1 4.0319 -0.1558 0.7884 15 8 3.6043 -1.8632 -0.2936 16 6 4.0232 -1.8751 2.0865 17 7 5.4677 -2.0780 1.9127 18 6 6.0322 -2.8344 3.0383 19 6 7.5347 -3.0258 2.8217 20 6 8.1140 -3.8013 3.9768 21 8 7.3957 -4.1654 4.8838 22 7 9.4300 -4.0911 4.0015 23 6 9.9510 -4.8917 5.0239 24 6 9.1832 -5.9131 5.5678 25 6 9.7005 -6.7019 6.5764 26 6 10.9819 -6.4759 7.0446 27 6 11.7490 -5.4595 6.5055 28 6 11.2374 -4.6671 5.4965 29 1 -0.3634 0.5338 0.8782 30 1 -0.3635 0.4935 -0.9014 31 1 -0.3633 -1.0274 0.0232 32 1 1.5609 1.9274 0.8310 33 1 3.0796 1.3445 0.1082 34 1 1.9878 4.8555 -2.8234 35 1 1.4351 -1.6952 1.2404 36 1 1.8943 -0.1777 2.0496 37 1 3.1309 -2.7060 -0.2673 38 1 3.5245 -2.8427 2.1420 39 1 3.8424 -1.3198 3.0069 40 1 5.6657 -2.5339 1.0347 41 1 5.5475 -3.8086 3.1009 42 1 5.8654 -2.2854 3.9651 43 1 8.0197 -2.0517 2.7590 44 1 7.7011 -3.5751 1.8951 45 1 10.0159 -3.7445 3.3105 46 1 8.1808 -6.0876 5.2053 47 1 9.1037 -7.4961 7.0000 48 1 11.3841 -7.0940 7.8338 49 1 12.7492 -5.2853 6.8736 50 1 11.8371 -3.8737 5.0756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591740906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:04 Heat of formation + Delta-G solvation = -49.588152 kcal Electronic energy + Delta-G solvation = -27538.809198 eV Core-core repulsion = 23566.038255 eV Total energy + Delta-G solvation = -3972.770943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97144 -38.95070 -38.33699 -36.31150 -35.29130 -35.08294 -32.41249 -31.89501 -31.31716 -30.08550 -28.98591 -27.90358 -25.75281 -23.99495 -23.25820 -22.89640 -22.09319 -21.56307 -20.61142 -19.92972 -18.28685 -17.49149 -16.98943 -16.64870 -16.58455 -16.10581 -15.85105 -15.16840 -15.07411 -14.93075 -14.60341 -14.49093 -14.22477 -14.02723 -13.78608 -13.57210 -13.37419 -13.17469 -13.08683 -12.61005 -12.49822 -12.28233 -12.12188 -11.83253 -11.68143 -11.58074 -11.44254 -11.30766 -11.06308 -10.83663 -10.76038 -10.47339 -10.26610 -10.15377 -9.87308 -9.64378 -9.33906 -9.18834 -8.59181 -8.56109 -8.51639 -7.32257 -6.00624 -3.97166 0.84030 0.99566 2.16330 2.52635 3.32024 3.38791 3.40599 3.42131 3.85097 4.29595 4.45985 4.48872 4.54725 4.62026 4.64941 4.75594 4.76108 4.88732 4.99650 5.11607 5.14072 5.19440 5.20647 5.25906 5.33278 5.44515 5.55359 5.60084 5.63243 5.68235 5.71634 5.88240 5.90660 5.93660 6.04049 6.07986 6.15014 6.25879 6.39357 6.61106 6.67450 6.79946 6.88196 6.89728 7.00497 7.25198 7.63505 7.64774 7.88792 8.04445 8.07640 8.70544 9.08370 9.61262 11.12660 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.001648 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.574255 B =16984.834875 C =17832.346337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.023 3.977 13 C 0.114 3.886 14 H 0.109 0.891 15 O -0.540 6.540 16 C 0.031 3.969 17 N -0.686 5.686 18 C 0.074 3.926 19 C -0.139 4.139 20 C 0.517 3.483 21 O -0.519 6.519 22 N -0.677 5.677 23 C 0.147 3.853 24 C -0.122 4.122 25 C -0.101 4.101 26 C -0.138 4.138 27 C -0.101 4.101 28 C -0.148 4.148 29 H 0.010 0.990 30 H 0.079 0.921 31 H 0.045 0.955 32 H -0.014 1.014 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.361 0.639 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.348 0.652 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.413 0.587 46 H 0.134 0.866 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.126 0.874 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.418 -21.731 17.416 33.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.107 4.107 13 C 0.053 3.947 14 H 0.127 0.873 15 O -0.343 6.343 16 C -0.099 4.099 17 N -0.318 5.318 18 C -0.056 4.056 19 C -0.179 4.179 20 C 0.305 3.695 21 O -0.394 6.394 22 N -0.323 5.323 23 C 0.053 3.947 24 C -0.143 4.143 25 C -0.120 4.120 26 C -0.157 4.157 27 C -0.120 4.120 28 C -0.168 4.168 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.003 0.997 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.206 0.794 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.167 0.833 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.249 0.751 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.534 -20.877 17.556 32.978 hybrid contribution -0.066 -0.066 1.132 1.136 sum 18.468 -20.943 18.688 33.600 Atomic orbital electron populations 1.22232 0.88192 0.99236 1.01291 1.61866 1.06951 1.16487 1.39142 1.20234 0.95074 0.84006 0.97177 1.21023 1.35402 0.97079 1.00860 0.90159 1.24894 0.95821 0.97379 0.95269 1.69898 1.47102 1.13230 1.23842 0.86887 0.81068 0.79232 0.82726 1.20025 1.21264 1.19374 1.22721 0.95918 0.98497 0.93560 1.21994 0.94732 0.94814 0.83111 0.87302 1.86699 1.74835 1.34367 1.38363 1.22674 0.87605 0.99204 1.00428 1.60323 1.13155 1.53233 1.05100 1.21641 0.91666 0.96907 0.95363 1.21634 0.97916 1.01813 0.96511 1.20948 0.81295 0.79342 0.87951 1.90736 1.59063 1.52073 1.37480 1.43636 1.09773 1.51026 1.27848 1.17786 0.93645 0.91665 0.91571 1.21190 1.00821 0.93937 0.98306 1.21080 0.95501 0.99064 0.96318 1.21164 0.94703 0.98907 1.00903 1.20962 0.99839 0.95256 0.95939 1.20926 0.95354 1.01459 0.99075 0.97099 0.90200 0.93598 0.99661 0.95625 0.92739 0.91801 0.95012 0.79351 0.94999 0.90281 0.83285 0.94521 0.90230 0.87355 0.88302 0.75120 0.84807 0.85698 0.85953 0.85652 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.32 60.06 0.56 1.31 16 2 N -0.52 -10.89 4.58 -244.37 -1.12 -12.01 16 3 C 0.16 3.97 3.64 -4.97 -0.02 3.95 16 4 C -0.51 -14.64 9.09 -34.44 -0.31 -14.95 16 5 H 0.08 2.53 7.34 -52.49 -0.39 2.15 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 8 Si 0.87 21.87 27.47 -169.99 -4.67 17.20 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 12 C 0.02 0.37 4.64 -3.83 -0.02 0.35 16 13 C 0.11 1.72 3.22 -26.73 -0.09 1.63 16 14 H 0.11 1.98 6.60 -51.93 -0.34 1.64 16 15 O -0.54 -8.38 12.73 -35.23 -0.45 -8.83 16 16 C 0.03 0.36 5.36 -3.82 -0.02 0.34 16 17 N -0.69 -7.53 6.50 -113.77 -0.74 -8.27 16 18 C 0.07 0.71 4.97 -3.82 -0.02 0.70 16 19 C -0.14 -0.99 5.96 -27.88 -0.17 -1.15 16 20 C 0.52 4.60 7.58 -10.98 -0.08 4.52 16 21 O -0.52 -6.54 13.64 5.55 0.08 -6.46 16 22 N -0.68 -4.68 5.34 -9.86 -0.05 -4.73 16 23 C 0.15 1.24 6.28 -83.70 -0.53 0.72 16 24 C -0.12 -1.15 8.67 -39.40 -0.34 -1.49 16 25 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 26 C -0.14 -0.92 10.04 -39.55 -0.40 -1.32 16 27 C -0.10 -0.65 10.04 -39.61 -0.40 -1.04 16 28 C -0.15 -1.02 9.96 -39.39 -0.39 -1.41 16 29 H 0.01 0.20 8.13 -51.93 -0.42 -0.23 16 30 H 0.08 1.70 6.89 -51.93 -0.36 1.35 16 31 H 0.05 0.73 7.97 -51.93 -0.41 0.32 16 32 H -0.01 -0.36 7.17 -51.93 -0.37 -0.73 16 33 H 0.03 0.64 5.83 -51.93 -0.30 0.34 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 36 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 37 H 0.36 4.18 9.05 45.56 0.41 4.59 16 38 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.35 3.64 8.29 -39.29 -0.33 3.31 16 41 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.08 0.88 8.10 -51.93 -0.42 0.45 16 43 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.41 1.52 8.82 -40.82 -0.36 1.16 16 46 H 0.13 1.40 6.39 -52.48 -0.34 1.07 16 47 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 49 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 50 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -35.57 406.97 -10.18 -45.75 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.42 Total: 5.58 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.71 Total: -7.14 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -1.14 Total: -52.24 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.37 Total: -15.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.57 -10.18 -45.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591740906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.834 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds