Wall clock time and date at job start Tue Mar 31 2020 18:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46912 * 110.99515 * 2 1 4 4 C 1.50693 * 109.47107 * 293.95476 * 3 2 1 5 5 H 1.08001 * 120.00465 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99839 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99947 * 179.97438 * 6 4 3 8 8 Si 1.86792 * 120.00057 * 0.02562 * 6 4 3 9 9 H 1.48509 * 109.47421 * 89.99781 * 8 6 4 10 10 H 1.48498 * 109.47449 * 209.99935 * 8 6 4 11 11 H 1.48501 * 109.47026 * 329.99820 * 8 6 4 12 12 C 1.46897 * 111.00379 * 123.95294 * 2 1 3 13 13 C 1.52997 * 109.47009 * 163.95818 * 12 2 1 14 14 H 1.09004 * 109.47702 * 59.64520 * 13 12 2 15 15 O 1.42901 * 109.47065 * 299.63973 * 13 12 2 16 16 C 1.53003 * 109.47010 * 179.64558 * 13 12 2 17 17 N 1.46902 * 109.47123 * 184.99847 * 16 13 12 18 18 C 1.46899 * 111.00077 * 179.97438 * 17 16 13 19 19 C 1.53004 * 109.47254 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.46981 * 179.97438 * 19 18 17 21 21 O 1.21289 * 120.00209 * 0.02562 * 20 19 18 22 22 N 1.34780 * 119.99818 * 179.97438 * 20 19 18 23 23 C 1.39920 * 119.99986 * 184.56091 * 22 20 19 24 24 C 1.38872 * 120.07469 * 33.47164 * 23 22 20 25 25 C 1.38103 * 119.93423 * 179.97438 * 24 23 22 26 26 C 1.38287 * 120.06842 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.14207 * 0.04564 * 26 25 24 28 28 C 1.38113 * 120.06990 * 359.95198 * 27 26 25 29 29 H 1.09000 * 109.47256 * 301.29249 * 1 2 3 30 30 H 1.09003 * 109.47739 * 61.29757 * 1 2 3 31 31 H 1.09004 * 109.46959 * 181.29552 * 1 2 3 32 32 H 1.09003 * 109.46985 * 53.95631 * 3 2 1 33 33 H 1.09001 * 109.46591 * 173.95397 * 3 2 1 34 34 H 0.96999 * 119.99944 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46811 * 43.96005 * 12 2 1 36 36 H 1.09001 * 109.47077 * 283.95872 * 12 2 1 37 37 H 0.96694 * 114.00519 * 300.00513 * 15 13 12 38 38 H 1.08998 * 109.47173 * 65.00150 * 16 13 12 39 39 H 1.09003 * 109.46986 * 304.99834 * 16 13 12 40 40 H 1.00897 * 110.99919 * 303.95541 * 17 16 13 41 41 H 1.08996 * 109.46975 * 59.99818 * 18 17 16 42 42 H 1.09002 * 109.47409 * 300.00222 * 18 17 16 43 43 H 1.09002 * 109.46650 * 60.00280 * 19 18 17 44 44 H 1.08998 * 109.47063 * 299.99912 * 19 18 17 45 45 H 0.96999 * 119.99687 * 4.55971 * 22 20 19 46 46 H 1.08005 * 120.03219 * 359.70638 * 24 23 22 47 47 H 1.07998 * 119.96605 * 179.97438 * 25 24 23 48 48 H 1.08005 * 119.92890 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.96314 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.03665 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 1.6367 2.0472 -1.2984 5 1 1.0737 1.5116 -2.0484 6 6 2.0265 3.3496 -1.5284 7 7 1.7140 3.9392 -2.6618 8 14 2.9995 4.2763 -0.2309 9 1 4.4521 4.0640 -0.4558 10 1 2.6913 5.7261 -0.3224 11 1 2.6290 3.7756 1.1172 12 6 1.9955 -0.7659 1.1375 13 6 3.4724 -1.0849 0.8976 14 1 4.0319 -0.1558 0.7884 15 8 3.6043 -1.8632 -0.2936 16 6 4.0232 -1.8751 2.0865 17 7 5.4677 -2.0780 1.9127 18 6 6.0322 -2.8344 3.0383 19 6 7.5347 -3.0258 2.8217 20 6 8.1140 -3.8013 3.9768 21 8 7.3957 -4.1654 4.8838 22 7 9.4300 -4.0911 4.0015 23 6 9.9510 -4.8917 5.0239 24 6 9.1832 -5.9131 5.5678 25 6 9.7005 -6.7019 6.5764 26 6 10.9819 -6.4759 7.0446 27 6 11.7490 -5.4595 6.5055 28 6 11.2374 -4.6671 5.4965 29 1 -0.3634 0.5338 0.8782 30 1 -0.3635 0.4935 -0.9014 31 1 -0.3633 -1.0274 0.0232 32 1 1.5609 1.9274 0.8310 33 1 3.0796 1.3445 0.1082 34 1 1.9878 4.8555 -2.8234 35 1 1.4351 -1.6952 1.2404 36 1 1.8943 -0.1777 2.0496 37 1 3.1309 -2.7060 -0.2673 38 1 3.5245 -2.8427 2.1420 39 1 3.8424 -1.3198 3.0069 40 1 5.6657 -2.5339 1.0347 41 1 5.5475 -3.8086 3.1009 42 1 5.8654 -2.2854 3.9651 43 1 8.0197 -2.0517 2.7590 44 1 7.7011 -3.5751 1.8951 45 1 10.0159 -3.7445 3.3105 46 1 8.1808 -6.0876 5.2053 47 1 9.1037 -7.4961 7.0000 48 1 11.3841 -7.0940 7.8338 49 1 12.7492 -5.2853 6.8736 50 1 11.8371 -3.8737 5.0756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591740906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:03 Heat of formation + Delta-G solvation = -79.125996 kcal Electronic energy + Delta-G solvation = -27540.090055 eV Core-core repulsion = 23566.038255 eV Total energy + Delta-G solvation = -3974.051800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60003 -39.70645 -39.41898 -37.59501 -36.32244 -35.81899 -34.58158 -32.72953 -31.84657 -31.02028 -30.14987 -29.56509 -26.95831 -25.23966 -24.28350 -23.67320 -22.81076 -22.73699 -21.58108 -21.24068 -19.06163 -18.84690 -18.13919 -17.57698 -17.35637 -17.13868 -16.77671 -16.40072 -16.24916 -15.94638 -15.75205 -15.60806 -15.30531 -15.01542 -14.75610 -14.59006 -14.42012 -14.28607 -14.22584 -13.84013 -13.67864 -13.44788 -13.19712 -12.98596 -12.69800 -12.60318 -12.56409 -12.38423 -12.24665 -12.20190 -12.16369 -11.86329 -11.63716 -11.44904 -11.42946 -10.97154 -10.76474 -10.74614 -9.88459 -9.42519 -9.13457 -8.95813 -8.27323 -6.29902 0.28095 0.44887 1.34304 1.35628 1.45703 1.52867 1.95211 2.34668 2.88049 2.93130 3.06184 3.36997 3.69550 3.71597 3.93376 3.97795 4.02871 4.05919 4.16511 4.20941 4.29461 4.31359 4.43482 4.51285 4.55255 4.56313 4.60514 4.61480 4.66172 4.70984 4.79758 4.89793 4.91569 4.91950 5.02408 5.09537 5.19123 5.22246 5.34091 5.38191 5.54852 5.56677 5.61353 5.92720 6.01175 6.07980 6.36144 6.38129 6.44357 6.66615 6.76073 7.05166 7.06232 7.33265 8.89484 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.001648 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.574255 B =16984.834875 C =17832.346337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.174 3.826 4 C -0.515 4.515 5 H 0.037 0.963 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.253 1.253 12 C 0.023 3.977 13 C 0.121 3.879 14 H 0.075 0.925 15 O -0.559 6.559 16 C 0.042 3.958 17 N -0.692 5.692 18 C 0.079 3.921 19 C -0.128 4.128 20 C 0.516 3.484 21 O -0.562 6.562 22 N -0.664 5.664 23 C 0.128 3.872 24 C -0.147 4.147 25 C -0.113 4.113 26 C -0.141 4.141 27 C -0.104 4.104 28 C -0.150 4.150 29 H 0.016 0.984 30 H 0.044 0.956 31 H 0.082 0.918 32 H -0.016 1.016 33 H 0.026 0.974 34 H 0.266 0.734 35 H 0.096 0.904 36 H 0.037 0.963 37 H 0.379 0.621 38 H 0.051 0.949 39 H 0.079 0.921 40 H 0.352 0.648 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.428 0.572 46 H 0.113 0.887 47 H 0.135 0.865 48 H 0.145 0.855 49 H 0.152 0.848 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.607 -22.616 19.453 36.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.263 5.263 3 C 0.046 3.954 4 C -0.553 4.553 5 H 0.055 0.945 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.768 3.232 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.176 1.176 12 C -0.106 4.106 13 C 0.061 3.939 14 H 0.093 0.907 15 O -0.365 6.365 16 C -0.088 4.088 17 N -0.325 5.325 18 C -0.050 4.050 19 C -0.168 4.168 20 C 0.305 3.695 21 O -0.440 6.440 22 N -0.311 5.311 23 C 0.034 3.966 24 C -0.168 4.168 25 C -0.132 4.132 26 C -0.160 4.160 27 C -0.122 4.122 28 C -0.170 4.170 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.001 0.999 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.227 0.773 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.172 0.828 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.267 0.733 46 H 0.131 0.869 47 H 0.153 0.847 48 H 0.163 0.837 49 H 0.170 0.830 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.745 -21.795 19.583 35.901 hybrid contribution -0.767 0.088 0.444 0.890 sum 19.978 -21.706 20.027 35.657 Atomic orbital electron populations 1.22196 0.87405 1.01234 0.99802 1.61737 1.07889 1.14564 1.42125 1.19941 0.95060 0.85964 0.94393 1.21281 1.34711 0.97435 1.01876 0.94501 1.25837 0.97013 0.98454 0.97662 1.70053 1.48753 1.13873 1.26240 0.85752 0.79560 0.77721 0.80151 1.18974 1.20567 1.17644 1.22851 0.96862 0.99045 0.91827 1.21792 0.93676 0.94184 0.84268 0.90662 1.86651 1.75397 1.35560 1.38855 1.22484 0.88232 0.99521 0.98568 1.60286 1.12745 1.53786 1.05664 1.21546 0.93264 0.96045 0.94171 1.21572 0.96104 1.02515 0.96622 1.21244 0.81620 0.78902 0.87752 1.90723 1.60180 1.53971 1.39158 1.43515 1.09413 1.50252 1.27899 1.18000 0.94408 0.91907 0.92314 1.21202 1.00408 0.95461 0.99693 1.21297 0.96422 0.99299 0.96171 1.21489 0.94156 0.99191 1.01158 1.21363 1.00909 0.94593 0.95368 1.21230 0.94769 1.01963 0.99000 0.96505 0.93659 0.89903 0.99884 0.95590 0.92471 0.88583 0.94477 0.77277 0.93069 0.90276 0.82838 0.95036 0.91814 0.86090 0.85963 0.73256 0.86864 0.84727 0.83738 0.83033 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.32 127.69 1.19 2.76 16 2 N -0.54 -22.14 4.58 -927.05 -4.25 -26.39 16 3 C 0.17 8.52 3.64 85.55 0.31 8.84 16 4 C -0.51 -30.67 9.09 25.60 0.23 -30.44 16 5 H 0.04 2.45 7.34 -2.91 -0.02 2.43 16 6 C 0.01 0.44 5.47 84.65 0.46 0.91 16 7 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 8 Si 0.94 45.16 27.47 68.60 1.88 47.04 16 9 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 12 C 0.02 0.70 4.64 86.30 0.40 1.10 16 13 C 0.12 3.47 3.22 30.59 0.10 3.56 16 14 H 0.08 2.69 6.60 -2.38 -0.02 2.67 16 15 O -0.56 -16.48 12.73 -148.98 -1.90 -18.38 16 16 C 0.04 0.90 5.36 86.30 0.46 1.36 16 17 N -0.69 -13.96 6.50 -513.87 -3.34 -17.31 16 18 C 0.08 1.43 4.97 86.30 0.43 1.86 16 19 C -0.13 -1.61 5.96 29.85 0.18 -1.43 16 20 C 0.52 8.85 7.58 87.66 0.66 9.52 16 21 O -0.56 -14.47 13.64 -3.06 -0.04 -14.51 16 22 N -0.66 -8.46 5.34 -303.50 -1.62 -10.08 16 23 C 0.13 2.07 6.28 38.15 0.24 2.31 16 24 C -0.15 -2.83 8.67 22.39 0.19 -2.64 16 25 C -0.11 -1.73 10.04 22.25 0.22 -1.51 16 26 C -0.14 -1.66 10.04 22.29 0.22 -1.43 16 27 C -0.10 -1.09 10.04 22.25 0.22 -0.86 16 28 C -0.15 -1.78 9.96 22.39 0.22 -1.55 16 29 H 0.02 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.04 1.99 6.89 -2.39 -0.02 1.97 16 31 H 0.08 2.47 7.97 -2.38 -0.02 2.45 16 32 H -0.02 -0.81 7.17 -2.39 -0.02 -0.82 16 33 H 0.03 1.28 5.83 -2.39 -0.01 1.27 16 34 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.10 2.30 7.88 -2.39 -0.02 2.28 16 36 H 0.04 1.11 8.05 -2.39 -0.02 1.09 16 37 H 0.38 7.89 9.05 -74.06 -0.67 7.22 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.35 6.66 8.29 -89.70 -0.74 5.91 16 41 H 0.03 0.60 8.10 -2.39 -0.02 0.58 16 42 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 43 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.43 2.34 8.82 -92.71 -0.82 1.52 16 46 H 0.11 2.58 6.39 -2.91 -0.02 2.56 16 47 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 49 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 50 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -80.29 406.97 -4.53 -84.82 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -1.33 Total: 22.64 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.76 Total: -7.64 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -8.91 Total: -113.97 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.94 Total: -32.89 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -80.29 -4.53 -84.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591740906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.693 kcal (2) G-P(sol) polarization free energy of solvation -80.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds