Wall clock time and date at job start Tue Mar 31 2020 18:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38238 * 119.99791 * 269.72788 * 19 18 17 21 21 C 1.38230 * 119.99990 * 179.76232 * 20 19 18 22 22 C 1.38233 * 119.99909 * 0.48795 * 21 20 19 23 23 C 1.50703 * 120.00128 * 179.76652 * 22 21 20 24 24 C 1.50703 * 109.47102 * 270.02166 * 23 22 21 25 25 N 1.34778 * 119.99906 * 179.97438 * 24 23 22 26 26 O 1.21279 * 119.99956 * 359.97438 * 24 23 22 27 27 C 1.38239 * 120.00246 * 359.78791 * 22 21 20 28 28 C 1.38234 * 120.00121 * 89.99784 * 19 18 17 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08006 * 119.99797 * 359.97438 * 20 19 18 44 44 H 1.07996 * 120.00287 * 180.24829 * 21 20 19 45 45 H 1.08999 * 109.47316 * 30.01804 * 23 22 21 46 46 H 1.09004 * 109.47101 * 150.02453 * 23 22 21 47 47 H 0.96996 * 119.99846 * 359.97438 * 25 24 23 48 48 H 0.96999 * 119.99513 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00337 * 179.97438 * 27 22 21 50 50 H 1.07999 * 119.99855 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 8.4359 -2.5375 -2.9509 21 6 9.7431 -2.8798 -2.6595 22 6 10.0213 -4.0876 -2.0475 23 6 11.4468 -4.4631 -1.7344 24 6 12.0389 -5.2063 -2.9041 25 7 13.3128 -5.6432 -2.8499 26 8 11.3691 -5.4114 -3.8942 27 6 8.9919 -4.9513 -1.7229 28 6 7.6842 -4.6067 -2.0096 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 8.2189 -1.5957 -3.4331 44 1 10.5474 -2.2052 -2.9134 45 1 12.0275 -3.5601 -1.5463 46 1 11.4689 -5.1003 -0.8503 47 1 13.8485 -5.4789 -2.0582 48 1 13.6937 -6.1219 -3.6027 49 1 9.2092 -5.8952 -1.2452 50 1 6.8800 -5.2816 -1.7564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591767633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:49 Heat of formation + Delta-G solvation = -65.108059 kcal Electronic energy + Delta-G solvation = -27678.610783 eV Core-core repulsion = 23705.166846 eV Total energy + Delta-G solvation = -3973.443937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.27115 -39.09141 -38.12580 -36.05474 -35.03656 -34.09335 -32.88308 -32.43067 -31.02366 -30.11282 -28.39451 -27.23591 -25.79504 -24.15861 -23.05369 -22.84203 -21.58457 -21.38229 -20.48624 -19.99795 -17.88672 -17.13884 -16.83089 -16.37767 -16.14997 -15.84036 -15.63849 -15.17433 -14.95849 -14.84566 -14.65900 -14.37334 -14.19151 -14.07009 -13.61578 -13.50666 -13.23259 -13.02060 -12.56359 -12.51310 -12.31432 -12.09173 -11.91498 -11.76492 -11.34538 -11.19575 -11.08143 -11.05520 -10.90610 -10.66365 -10.56642 -10.40375 -10.33106 -10.13032 -9.71334 -9.58794 -9.09328 -8.97486 -8.76287 -8.37027 -8.33821 -7.15521 -5.96386 -3.96750 1.15573 1.35878 2.25256 3.09813 3.37235 3.42626 3.46267 3.65946 4.22782 4.31450 4.48975 4.56214 4.68870 4.79006 4.80918 4.86755 4.88939 5.00896 5.08192 5.25948 5.33662 5.37090 5.39088 5.44582 5.51097 5.59629 5.64647 5.76982 5.84841 5.89049 5.97491 6.08342 6.11836 6.26757 6.33213 6.38584 6.41874 6.54924 6.59333 6.74602 6.83601 6.91515 7.00256 7.33789 7.36810 7.43239 7.85512 7.85776 8.10807 8.16766 8.26600 8.61452 9.10413 9.66833 11.14725 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.001783 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.883966 B =15701.768691 C =16712.201885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.112 0.888 15 O -0.541 6.541 16 C 0.029 3.971 17 N -0.677 5.677 18 C 0.097 3.903 19 C -0.077 4.077 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.074 4.074 23 C -0.102 4.102 24 C 0.516 3.484 25 N -0.860 5.860 26 O -0.532 6.532 27 C -0.106 4.106 28 C -0.112 4.112 29 H 0.011 0.989 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.032 0.968 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.358 0.642 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.349 0.651 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.401 0.599 48 H 0.401 0.599 49 H 0.117 0.883 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.694 -20.976 -7.699 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.129 0.871 15 O -0.343 6.343 16 C -0.100 4.100 17 N -0.309 5.309 18 C -0.031 4.031 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.075 4.075 23 C -0.142 4.142 24 C 0.301 3.699 25 N -0.425 5.425 26 O -0.407 6.407 27 C -0.124 4.124 28 C -0.130 4.130 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.203 0.797 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.169 0.831 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.229 0.771 48 H 0.231 0.769 49 H 0.135 0.865 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.949 -19.953 -7.828 27.957 hybrid contribution -0.734 -0.407 -0.086 0.844 sum 17.214 -20.360 -7.913 27.812 Atomic orbital electron populations 1.22190 0.88923 0.98497 1.01129 1.62038 1.06438 1.17882 1.39162 1.19787 0.95568 0.81397 0.96500 1.21158 1.34609 0.96809 1.01690 0.91924 1.24991 0.95381 0.97388 0.96950 1.69959 1.38530 1.11427 1.34014 0.86496 0.78829 0.78307 0.83748 1.20613 1.21415 1.19932 1.22676 0.95932 0.98022 0.93728 1.21985 0.95126 0.93592 0.83654 0.87078 1.86709 1.73820 1.34322 1.39465 1.22697 0.88294 0.98966 1.00093 1.60358 1.18040 1.47445 1.05076 1.20894 0.90796 0.96597 0.94848 1.19779 0.95111 0.94242 0.98585 1.20998 0.92000 0.99029 0.99221 1.20930 0.96774 0.96173 0.98481 1.19175 0.93176 0.95087 1.00012 1.20657 0.94540 1.01766 0.97232 1.20664 0.81603 0.78663 0.88994 1.43915 1.14351 1.61541 1.22650 1.90792 1.60179 1.56204 1.33491 1.20852 0.92479 0.98717 1.00341 1.20966 0.96473 0.96512 0.99098 0.97063 0.94014 0.90962 0.94990 0.99384 0.93007 0.92368 0.94938 0.79734 0.95415 0.90297 0.83133 0.94681 0.90248 0.85744 0.86324 0.87779 0.87849 0.77063 0.76880 0.86457 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.07 0.56 1.37 16 2 N -0.53 -11.65 4.59 -244.37 -1.12 -12.77 16 3 C 0.19 5.13 4.55 -4.98 -0.02 5.11 16 4 C -0.50 -14.59 8.58 -34.44 -0.30 -14.88 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 13 C 0.12 1.92 3.31 -26.73 -0.09 1.84 16 14 H 0.11 2.27 6.73 -51.93 -0.35 1.92 16 15 O -0.54 -8.99 12.58 -35.23 -0.44 -9.43 16 16 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16 17 N -0.68 -8.73 6.49 -115.06 -0.75 -9.48 16 18 C 0.10 1.08 5.81 -4.98 -0.03 1.05 16 19 C -0.08 -0.88 5.39 -104.62 -0.56 -1.45 16 20 C -0.09 -1.08 9.70 -39.58 -0.38 -1.47 16 21 C -0.11 -1.12 9.70 -39.59 -0.38 -1.50 16 22 C -0.07 -0.72 4.37 -104.62 -0.46 -1.18 16 23 C -0.10 -0.63 5.83 -29.03 -0.17 -0.80 16 24 C 0.52 4.06 8.09 -10.98 -0.09 3.97 16 25 N -0.86 -3.20 8.87 31.22 0.28 -2.93 16 26 O -0.53 -6.90 16.87 5.56 0.09 -6.81 16 27 C -0.11 -1.06 9.70 -39.58 -0.38 -1.45 16 28 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 29 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 30 H 0.04 0.68 7.85 -51.93 -0.41 0.28 16 31 H 0.07 1.52 7.01 -51.93 -0.36 1.16 16 32 H 0.03 0.91 6.60 -51.93 -0.34 0.57 16 33 H -0.01 -0.33 8.07 -51.92 -0.42 -0.75 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 36 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 37 H 0.36 4.45 9.05 45.56 0.41 4.86 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.35 4.53 8.11 -39.29 -0.32 4.21 16 41 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 42 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 43 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 46 H 0.10 0.40 8.09 -51.93 -0.42 -0.02 16 47 H 0.40 0.20 8.83 -40.82 -0.36 -0.16 16 48 H 0.40 1.30 8.93 -40.82 -0.36 0.94 16 49 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 50 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 414.39 15.07 6.24 6.24 Total: -1.00 -36.71 414.39 -10.28 -46.99 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.48 Total: 6.23 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.83 Total: -8.68 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.85 Total: -51.72 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.35 Total: -16.24 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.71 -10.28 -46.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.118 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds