Wall clock time and date at job start Tue Mar 31 2020 18:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38238 * 119.99791 * 269.72788 * 19 18 17 21 21 C 1.38230 * 119.99990 * 179.76232 * 20 19 18 22 22 C 1.38233 * 119.99909 * 0.48795 * 21 20 19 23 23 C 1.50703 * 120.00128 * 179.76652 * 22 21 20 24 24 C 1.50703 * 109.47102 * 270.02166 * 23 22 21 25 25 N 1.34778 * 119.99906 * 179.97438 * 24 23 22 26 26 O 1.21279 * 119.99956 * 359.97438 * 24 23 22 27 27 C 1.38239 * 120.00246 * 359.78791 * 22 21 20 28 28 C 1.38234 * 120.00121 * 89.99784 * 19 18 17 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08006 * 119.99797 * 359.97438 * 20 19 18 44 44 H 1.07996 * 120.00287 * 180.24829 * 21 20 19 45 45 H 1.08999 * 109.47316 * 30.01804 * 23 22 21 46 46 H 1.09004 * 109.47101 * 150.02453 * 23 22 21 47 47 H 0.96996 * 119.99846 * 359.97438 * 25 24 23 48 48 H 0.96999 * 119.99513 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.00337 * 179.97438 * 27 22 21 50 50 H 1.07999 * 119.99855 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 8.4359 -2.5375 -2.9509 21 6 9.7431 -2.8798 -2.6595 22 6 10.0213 -4.0876 -2.0475 23 6 11.4468 -4.4631 -1.7344 24 6 12.0389 -5.2063 -2.9041 25 7 13.3128 -5.6432 -2.8499 26 8 11.3691 -5.4114 -3.8942 27 6 8.9919 -4.9513 -1.7229 28 6 7.6842 -4.6067 -2.0096 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.4714 -2.8432 -0.9473 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 8.2189 -1.5957 -3.4331 44 1 10.5474 -2.2052 -2.9134 45 1 12.0275 -3.5601 -1.5463 46 1 11.4689 -5.1003 -0.8503 47 1 13.8485 -5.4789 -2.0582 48 1 13.6937 -6.1219 -3.6027 49 1 9.2092 -5.8952 -1.2452 50 1 6.8800 -5.2816 -1.7564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591767633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:48 Heat of formation + Delta-G solvation = -96.778947 kcal Electronic energy + Delta-G solvation = -27679.984136 eV Core-core repulsion = 23705.166846 eV Total energy + Delta-G solvation = -3974.817290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.94018 -39.88247 -39.42451 -37.48346 -36.22595 -34.64090 -34.59929 -33.66682 -31.79431 -31.28739 -29.55133 -29.06648 -27.00903 -25.60978 -24.46962 -23.63346 -22.75909 -22.25967 -21.68190 -21.12289 -18.61464 -18.36264 -17.76783 -17.68260 -17.28073 -16.80063 -16.68807 -16.51004 -16.12354 -15.89314 -15.86810 -15.67277 -15.28457 -15.05679 -14.88986 -14.77527 -14.28811 -14.13461 -13.92606 -13.76312 -13.32338 -13.16309 -13.03751 -13.00457 -12.86245 -12.64233 -12.54678 -12.49573 -12.31693 -12.13655 -11.96529 -11.80780 -11.52065 -11.32585 -11.08421 -10.76567 -10.61259 -10.59805 -9.77020 -9.57103 -9.27136 -8.94115 -8.19484 -6.29207 0.38118 0.56310 1.40223 1.43006 1.53454 1.69221 2.41044 2.55515 2.92422 3.12104 3.15960 3.54368 3.70658 3.71669 3.88718 3.96007 4.03398 4.15248 4.19260 4.25646 4.28536 4.36082 4.43744 4.55839 4.58521 4.61427 4.62524 4.65012 4.69290 4.78548 4.80459 4.84503 5.08510 5.13474 5.15578 5.20576 5.26419 5.32013 5.49496 5.65713 5.66689 5.73375 5.93931 6.00964 6.08046 6.15311 6.35753 6.44620 6.52469 6.66196 6.86836 7.07000 7.40140 7.41060 8.91739 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.001783 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.883966 B =15701.768691 C =16712.201885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.027 3.973 13 C 0.126 3.874 14 H 0.061 0.939 15 O -0.558 6.558 16 C 0.043 3.957 17 N -0.692 5.692 18 C 0.104 3.896 19 C -0.094 4.094 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.080 4.080 23 C -0.099 4.099 24 C 0.514 3.486 25 N -0.839 5.839 26 O -0.592 6.592 27 C -0.117 4.117 28 C -0.121 4.121 29 H 0.007 0.993 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.002 0.998 33 H -0.041 1.041 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.379 0.621 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.349 0.651 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.420 0.580 48 H 0.405 0.595 49 H 0.138 0.862 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.017 -22.905 -6.526 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.187 1.187 12 C -0.103 4.103 13 C 0.066 3.934 14 H 0.079 0.921 15 O -0.363 6.363 16 C -0.086 4.086 17 N -0.325 5.325 18 C -0.025 4.025 19 C -0.094 4.094 20 C -0.134 4.134 21 C -0.139 4.139 22 C -0.081 4.081 23 C -0.138 4.138 24 C 0.300 3.700 25 N -0.403 5.403 26 O -0.472 6.472 27 C -0.135 4.135 28 C -0.139 4.139 29 H 0.025 0.975 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.020 0.980 33 H -0.024 1.024 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.045 0.955 37 H 0.227 0.773 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.168 0.832 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.138 0.862 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.251 0.749 48 H 0.236 0.764 49 H 0.155 0.845 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.307 -21.920 -6.633 29.320 hybrid contribution -0.750 0.112 -0.459 0.886 sum 17.557 -21.808 -7.091 28.881 Atomic orbital electron populations 1.22216 0.87437 1.00911 0.99998 1.61931 1.07882 1.15078 1.41677 1.19383 0.93668 0.83906 0.94685 1.21494 1.34771 0.97488 1.02473 0.92062 1.25950 0.95059 0.98121 1.00786 1.70093 1.39422 1.11869 1.36177 0.85367 0.78957 0.77250 0.78945 1.20008 1.20614 1.18719 1.22801 0.96968 0.98641 0.91842 1.21677 0.93958 0.92619 0.85130 0.92087 1.86656 1.74528 1.35439 1.39713 1.22480 0.88738 0.99540 0.97879 1.60304 1.18099 1.48294 1.05759 1.20849 0.90837 0.96861 0.93906 1.19887 0.95155 0.94862 0.99514 1.21164 0.92915 0.99279 1.00071 1.21197 0.96746 0.97143 0.98785 1.19593 0.95195 0.94450 0.98814 1.20738 0.92485 1.03187 0.97397 1.20940 0.82262 0.78266 0.88517 1.43752 1.13188 1.59907 1.23471 1.90773 1.61888 1.58843 1.35693 1.21209 0.92409 0.99577 1.00273 1.21215 0.97429 0.96424 0.98855 0.97468 0.89766 0.92795 0.97967 1.02387 0.92744 0.88359 0.95463 0.77334 0.92433 0.90498 0.83205 0.93183 0.90547 0.86157 0.85142 0.85429 0.85014 0.74887 0.76389 0.84454 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.31 127.69 1.19 2.83 16 2 N -0.54 -23.82 4.59 -927.06 -4.25 -28.07 16 3 C 0.21 11.66 4.55 85.56 0.39 12.05 16 4 C -0.52 -31.03 8.58 25.60 0.22 -30.81 16 5 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 6 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 7 N -0.93 -58.23 13.29 21.45 0.28 -57.95 16 8 Si 0.97 45.85 29.54 68.60 2.03 47.87 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.03 0.91 4.65 86.30 0.40 1.31 16 13 C 0.13 4.20 3.31 30.59 0.10 4.30 16 14 H 0.06 2.66 6.73 -2.39 -0.02 2.64 16 15 O -0.56 -18.11 12.58 -148.98 -1.87 -19.98 16 16 C 0.04 1.09 5.39 86.30 0.47 1.55 16 17 N -0.69 -17.71 6.49 -517.94 -3.36 -21.07 16 18 C 0.10 2.26 5.81 85.56 0.50 2.76 16 19 C -0.09 -2.17 5.39 -19.86 -0.11 -2.27 16 20 C -0.12 -2.77 9.70 22.27 0.22 -2.56 16 21 C -0.12 -2.57 9.70 22.27 0.22 -2.36 16 22 C -0.08 -1.49 4.37 -19.86 -0.09 -1.57 16 23 C -0.10 -1.00 5.83 29.10 0.17 -0.83 16 24 C 0.51 7.35 8.09 87.66 0.71 8.06 16 25 N -0.84 -4.48 8.87 -173.53 -1.54 -6.02 16 26 O -0.59 -15.34 16.87 -3.03 -0.05 -15.39 16 27 C -0.12 -2.22 9.70 22.27 0.22 -2.01 16 28 C -0.12 -2.49 9.70 22.27 0.22 -2.28 16 29 H 0.01 0.27 8.08 -2.39 -0.02 0.25 16 30 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16 31 H 0.05 2.24 7.01 -2.39 -0.02 2.23 16 32 H 0.00 0.14 6.60 -2.39 -0.02 0.12 16 33 H -0.04 -2.49 8.07 -2.38 -0.02 -2.51 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.10 2.58 7.75 -2.39 -0.02 2.57 16 36 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 37 H 0.38 8.52 9.05 -74.06 -0.67 7.85 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.35 8.89 8.11 -89.69 -0.73 8.16 16 41 H 0.05 0.93 8.09 -2.38 -0.02 0.91 16 42 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 43 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 45 H 0.13 0.69 8.09 -2.39 -0.02 0.67 16 46 H 0.13 0.58 8.09 -2.38 -0.02 0.56 16 47 H 0.42 -0.81 8.83 -92.71 -0.82 -1.63 16 48 H 0.41 1.95 8.93 -92.71 -0.83 1.13 16 49 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 50 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -83.28 414.39 -5.56 -88.84 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -2.07 Total: 23.21 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.27 Total: -11.45 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -8.87 Total: -113.11 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.93 Total: -35.37 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -83.28 -5.56 -88.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.936 kcal (2) G-P(sol) polarization free energy of solvation -83.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds