Wall clock time and date at job start Tue Mar 31 2020 18:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46547 * 180.02562 * 18 17 16 20 20 C 1.38237 * 119.99602 * 269.72367 * 19 18 17 21 21 C 1.38238 * 119.99493 * 179.76983 * 20 19 18 22 22 C 1.38231 * 120.00141 * 0.48645 * 21 20 19 23 23 C 1.50703 * 120.00162 * 179.76981 * 22 21 20 24 24 C 1.50691 * 109.47169 * 270.02002 * 23 22 21 25 25 N 1.34781 * 120.00250 * 179.97438 * 24 23 22 26 26 O 1.21281 * 119.99913 * 0.02562 * 24 23 22 27 27 C 1.38236 * 120.00108 * 359.78636 * 22 21 20 28 28 C 1.38231 * 119.99987 * 359.96029 * 27 22 21 29 29 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 30 30 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 31 31 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 32 32 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 33 33 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 34 34 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 36 36 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 37 37 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 38 38 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 39 39 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 40 40 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 41 41 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 42 42 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 43 43 H 1.07995 * 120.00495 * 0.02562 * 20 19 18 44 44 H 1.08002 * 119.99656 * 180.25060 * 21 20 19 45 45 H 1.09009 * 109.46876 * 30.02249 * 23 22 21 46 46 H 1.08994 * 109.47401 * 150.01682 * 23 22 21 47 47 H 0.97001 * 119.99413 * 0.02562 * 25 24 23 48 48 H 0.97000 * 119.99720 * 179.97438 * 25 24 23 49 49 H 1.08002 * 119.99926 * 179.97438 * 27 22 21 50 50 H 1.08002 * 120.00133 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5679 -2.8200 2.8992 20 6 8.0371 -3.9763 2.3044 21 6 9.3931 -4.1448 2.0954 22 6 10.2808 -3.1614 2.4902 23 6 11.7595 -3.3474 2.2671 24 6 12.3673 -4.0256 3.4677 25 7 13.6874 -4.2964 3.4923 26 8 11.6685 -4.3286 4.4114 27 6 9.8120 -2.0076 3.0901 28 6 8.4556 -1.8368 3.2944 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3634 0.5940 0.8385 31 1 -0.3632 -1.0233 0.0953 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1083 34 1 2.9861 4.9182 -0.7768 35 1 1.8943 -0.1776 2.0496 36 1 1.4350 -1.6951 1.2405 37 1 3.1332 -2.7955 -0.1323 38 1 3.8797 -1.1513 3.0120 39 1 3.5677 -2.7404 2.2732 40 1 5.6864 -2.4932 1.1085 41 1 5.9303 -2.0176 4.0071 42 1 5.6182 -3.6063 3.2676 43 1 7.3439 -4.7462 1.9993 44 1 9.7594 -5.0464 1.6270 45 1 11.9188 -3.9637 1.3822 46 1 12.2302 -2.3750 2.1220 47 1 14.2463 -4.0543 2.7373 48 1 14.0787 -4.7326 4.2653 49 1 10.5056 -1.2395 3.3990 50 1 8.0894 -0.9355 3.7635 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591767634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:52 Heat of formation + Delta-G solvation = -64.957449 kcal Electronic energy + Delta-G solvation = -27713.635220 eV Core-core repulsion = 23740.197814 eV Total energy + Delta-G solvation = -3973.437406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26218 -39.08201 -38.13248 -36.04778 -35.05247 -34.08535 -32.88429 -32.42988 -31.01268 -30.09828 -28.38091 -27.24547 -25.78690 -24.14278 -23.05674 -22.83399 -21.59139 -21.40739 -20.47741 -19.97488 -17.87847 -17.13076 -16.81491 -16.38591 -16.14571 -15.83496 -15.63063 -15.16677 -14.97038 -14.83055 -14.65477 -14.37518 -14.18343 -14.05824 -13.60481 -13.49553 -13.24963 -13.01401 -12.55605 -12.50826 -12.30540 -12.09583 -11.92543 -11.75085 -11.33548 -11.19912 -11.09498 -11.04477 -10.90838 -10.65734 -10.58307 -10.39583 -10.30945 -10.12279 -9.70408 -9.57488 -9.08010 -8.96408 -8.75254 -8.37369 -8.33867 -7.15656 -5.96321 -3.96630 1.16589 1.36947 2.26017 3.10637 3.35698 3.42743 3.48157 3.66963 4.24198 4.32406 4.49085 4.57201 4.69741 4.79486 4.80188 4.86909 4.89831 5.01336 5.09161 5.26830 5.34736 5.37784 5.39769 5.44485 5.51915 5.60683 5.63845 5.77593 5.85355 5.90059 5.98550 6.08314 6.11868 6.27724 6.33982 6.38581 6.42929 6.55911 6.59761 6.74559 6.84475 6.92495 7.01381 7.34203 7.37044 7.43475 7.86066 7.86266 8.10274 8.16838 8.26437 8.61500 9.10816 9.66998 11.14803 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.001831 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.767363 B =15290.770147 C =16427.523975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.191 3.809 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.027 3.973 13 C 0.114 3.886 14 H 0.115 0.885 15 O -0.542 6.542 16 C 0.030 3.970 17 N -0.677 5.677 18 C 0.097 3.903 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.074 4.074 23 C -0.102 4.102 24 C 0.516 3.484 25 N -0.860 5.860 26 O -0.532 6.532 27 C -0.106 4.106 28 C -0.094 4.094 29 H 0.072 0.928 30 H 0.011 0.989 31 H 0.041 0.959 32 H -0.012 1.012 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.358 0.642 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.349 0.651 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.401 0.599 48 H 0.401 0.599 49 H 0.119 0.881 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.475 -18.693 8.792 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.103 4.103 13 C 0.054 3.946 14 H 0.132 0.868 15 O -0.345 6.345 16 C -0.100 4.100 17 N -0.309 5.309 18 C -0.031 4.031 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.074 4.074 23 C -0.142 4.142 24 C 0.301 3.699 25 N -0.425 5.425 26 O -0.407 6.407 27 C -0.124 4.124 28 C -0.112 4.112 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.203 0.797 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.168 0.832 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.229 0.771 48 H 0.231 0.769 49 H 0.137 0.863 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.589 -17.723 8.893 27.180 hybrid contribution -0.586 -0.390 0.097 0.711 sum 18.003 -18.113 8.990 27.074 Atomic orbital electron populations 1.22184 0.88921 0.98500 1.01151 1.62059 1.06460 1.17909 1.39156 1.19804 0.95649 0.81400 0.96522 1.21192 1.34504 0.96775 1.01706 0.91875 1.24991 0.95391 0.97402 0.96956 1.69970 1.38577 1.11351 1.34004 0.86449 0.78125 0.79222 0.83669 1.19692 1.21233 1.21005 1.22665 0.95770 0.98116 0.93706 1.22032 0.94671 0.94021 0.83857 0.86780 1.86708 1.76088 1.30483 1.41229 1.22706 0.87826 0.99209 1.00247 1.60400 1.11900 1.53964 1.04654 1.20894 0.90202 0.97267 0.94777 1.19779 0.95142 0.94230 0.98582 1.20967 0.95400 0.97376 0.99306 1.20850 0.93146 0.98125 1.00278 1.19174 0.93133 0.95173 0.99967 1.20655 0.93749 1.02732 0.97059 1.20663 0.82076 0.78362 0.88817 1.43917 1.09537 1.65083 1.23924 1.90792 1.60757 1.51877 1.37242 1.20934 0.95692 0.97056 0.98679 1.20999 0.92632 0.98441 0.99155 0.90968 0.97028 0.94010 0.99381 0.94866 0.93062 0.95085 0.92294 0.79687 0.90302 0.95393 0.83173 0.90247 0.94666 0.86326 0.86462 0.87847 0.87777 0.77063 0.76883 0.86317 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.32 60.07 0.56 1.37 16 2 N -0.53 -11.68 4.66 -244.37 -1.14 -12.82 16 3 C 0.19 5.10 4.57 -4.97 -0.02 5.08 16 4 C -0.50 -14.56 8.58 -34.44 -0.30 -14.86 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 C 0.03 0.48 4.61 -3.83 -0.02 0.46 16 13 C 0.11 1.90 3.26 -26.73 -0.09 1.81 16 14 H 0.11 2.36 6.46 -51.93 -0.34 2.03 16 15 O -0.54 -9.04 12.81 -35.23 -0.45 -9.49 16 16 C 0.03 0.39 5.36 -3.82 -0.02 0.37 16 17 N -0.68 -8.86 6.49 -115.06 -0.75 -9.61 16 18 C 0.10 1.09 5.81 -4.97 -0.03 1.06 16 19 C -0.08 -0.89 5.39 -104.62 -0.56 -1.46 16 20 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 21 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 22 C -0.07 -0.73 4.37 -104.62 -0.46 -1.19 16 23 C -0.10 -0.64 5.83 -29.04 -0.17 -0.81 16 24 C 0.52 4.11 8.09 -10.99 -0.09 4.02 16 25 N -0.86 -3.28 8.87 31.22 0.28 -3.01 16 26 O -0.53 -6.96 16.87 5.56 0.09 -6.86 16 27 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 28 C -0.09 -1.10 9.70 -39.58 -0.38 -1.48 16 29 H 0.07 1.52 7.02 -51.93 -0.36 1.15 16 30 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 31 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 32 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 33 H 0.03 0.95 6.34 -51.93 -0.33 0.62 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 36 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 37 H 0.36 4.44 9.05 45.56 0.41 4.85 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 4.61 8.28 -39.29 -0.33 4.28 16 41 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.10 0.42 8.09 -51.92 -0.42 0.00 16 46 H 0.10 0.44 8.09 -51.93 -0.42 0.02 16 47 H 0.40 0.23 8.83 -40.82 -0.36 -0.13 16 48 H 0.40 1.34 8.93 -40.82 -0.36 0.97 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 414.36 15.07 6.24 6.24 Total: -1.00 -36.76 414.36 -10.29 -47.05 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.46 Total: 6.60 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.83 Total: -8.73 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.87 Total: -51.98 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.36 Total: -16.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.76 -10.29 -47.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.909 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds