Wall clock time and date at job start Tue Mar 31 2020 18:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99810 * 2 1 4 4 C 1.46901 * 110.99847 * 123.95424 * 2 1 3 5 5 H 1.09003 * 109.47019 * 62.73447 * 4 2 1 6 6 C 1.52998 * 109.46985 * 182.73233 * 4 2 1 7 7 N 1.46511 * 109.47309 * 305.00206 * 6 4 2 8 8 C 1.34769 * 120.00302 * 180.02562 * 7 6 4 9 9 O 1.21587 * 120.00135 * 4.97275 * 8 7 6 10 10 N 1.34779 * 120.00146 * 184.96852 * 8 7 6 11 11 C 1.46926 * 120.62917 * 354.91115 * 10 8 7 12 12 C 1.53191 * 108.89135 * 233.67321 * 11 10 8 13 13 C 1.53041 * 109.31277 * 305.29258 * 12 11 10 14 14 C 1.53040 * 109.53640 * 61.36416 * 13 12 11 15 15 H 1.09000 * 109.49499 * 58.62361 * 14 13 12 16 16 C 1.50700 * 109.49854 * 178.68341 * 14 13 12 17 17 H 1.08004 * 119.99839 * 0.02562 * 16 14 13 18 18 C 1.37872 * 120.00358 * 180.02562 * 16 14 13 19 19 N 1.31506 * 120.00089 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00196 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47225 * 59.99161 * 20 18 16 22 22 H 1.48496 * 109.47263 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46671 * 299.99714 * 20 18 16 24 24 C 1.47207 * 120.81564 * 175.04459 * 10 8 7 25 25 C 1.50693 * 109.47139 * 302.72971 * 4 2 1 26 26 C 1.34519 * 125.78739 * 141.18870 * 25 4 2 27 27 C 1.41380 * 106.83996 * 180.02562 * 26 25 4 28 28 C 1.34518 * 106.84346 * 359.97438 * 27 26 25 29 29 O 1.34302 * 108.41779 * 359.73853 * 28 27 26 30 30 H 1.08995 * 109.47283 * 296.04512 * 1 2 3 31 31 H 1.09004 * 109.46656 * 56.04675 * 1 2 3 32 32 H 1.09001 * 109.47216 * 176.04412 * 1 2 3 33 33 H 1.09006 * 109.46806 * 183.10534 * 3 2 1 34 34 H 1.08998 * 109.47236 * 303.10913 * 3 2 1 35 35 H 1.08998 * 109.47217 * 63.10929 * 3 2 1 36 36 H 1.09001 * 109.47250 * 185.00653 * 6 4 2 37 37 H 1.09004 * 109.47474 * 64.99686 * 6 4 2 38 38 H 0.97005 * 119.99492 * 359.97438 * 7 6 4 39 39 H 1.08999 * 109.58637 * 113.81293 * 11 10 8 40 40 H 1.09003 * 109.58581 * 353.53076 * 11 10 8 41 41 H 1.08996 * 109.50013 * 65.24397 * 12 11 10 42 42 H 1.08994 * 109.49794 * 185.34231 * 12 11 10 43 43 H 1.08999 * 109.46254 * 181.38711 * 13 12 11 44 44 H 1.09006 * 109.45814 * 301.36357 * 13 12 11 45 45 H 0.97003 * 120.00723 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.53004 * 6.54235 * 24 10 8 47 47 H 1.08992 * 109.67951 * 246.23611 * 24 10 8 48 48 H 1.07994 * 126.57975 * 359.95963 * 26 25 4 49 49 H 1.08001 * 126.58283 * 180.02562 * 27 26 25 50 50 H 1.07997 * 125.79039 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6861 -1.8074 1.0487 6 6 3.5233 -0.6865 1.1426 7 7 4.0400 -1.1350 -0.1529 8 6 5.3684 -1.1512 -0.3796 9 8 6.1418 -0.8805 0.5186 10 7 5.8396 -1.4674 -1.6021 11 6 4.9260 -1.9045 -2.6665 12 6 5.4179 -3.2441 -3.2234 13 6 6.8752 -3.1025 -3.6689 14 6 7.7445 -2.7312 -2.4653 15 1 7.6519 -3.5004 -1.6986 16 6 9.1839 -2.6237 -2.8985 17 1 9.4523 -2.8019 -3.9294 18 6 10.1581 -2.2979 -1.9789 19 7 9.8313 -2.0805 -0.7238 20 14 11.9422 -2.1639 -2.5161 21 1 12.0677 -1.1142 -3.5589 22 1 12.7852 -1.8038 -1.3478 23 1 12.3919 -3.4669 -3.0687 24 6 7.2790 -1.3858 -1.8998 25 6 1.4583 -0.1903 2.4225 26 6 1.0711 -0.8968 3.4997 27 6 0.6388 0.0377 4.4686 28 6 0.7882 1.2594 3.9258 29 8 1.2906 1.1154 2.6886 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0837 1.3429 -0.0557 34 1 1.6016 1.9118 -0.8608 35 1 1.6917 1.8772 0.9165 36 1 3.9179 -1.3261 1.9322 37 1 3.8331 0.3434 1.3204 38 1 3.4260 -1.4211 -0.8472 39 1 4.9109 -1.1608 -3.4633 40 1 3.9218 -2.0245 -2.2597 41 1 5.3468 -4.0081 -2.4493 42 1 4.8031 -3.5313 -4.0763 43 1 7.2202 -4.0476 -4.0883 44 1 6.9495 -2.3209 -4.4251 45 1 10.5166 -1.8509 -0.0768 46 1 7.8284 -1.1642 -0.9848 47 1 7.4581 -0.5996 -2.6331 48 1 1.0864 -1.9715 3.6040 49 1 0.2618 -0.1862 5.4556 50 1 0.5487 2.1971 4.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596090809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:18 Heat of formation + Delta-G solvation = 5.604659 kcal Electronic energy + Delta-G solvation = -30140.919101 eV Core-core repulsion = 26170.541497 eV Total energy + Delta-G solvation = -3970.377603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.91897 -39.71618 -38.23173 -36.64325 -34.10740 -33.37178 -33.11153 -31.71500 -30.92733 -29.65000 -28.21185 -27.52413 -25.07591 -24.82719 -23.68051 -22.10924 -21.98611 -21.71537 -20.25221 -19.95433 -18.80463 -17.66597 -17.25984 -16.55164 -16.18502 -16.08269 -15.75657 -15.06428 -14.83071 -14.70889 -14.49913 -14.04190 -13.75234 -13.60665 -13.41168 -13.18796 -13.00819 -12.89411 -12.71918 -12.50515 -12.37402 -12.31706 -12.02647 -11.92195 -11.82232 -11.67237 -11.30435 -10.92025 -10.83415 -10.46520 -10.32908 -10.16482 -10.15802 -9.79883 -9.36061 -9.01944 -8.90910 -8.84465 -8.65795 -8.61766 -8.35148 -7.54097 -5.91611 -4.00963 1.44899 2.36007 2.63399 3.33441 3.38695 3.42399 3.43761 3.69273 3.95850 4.29745 4.47969 4.58383 4.62747 4.76221 4.82169 4.97199 4.99636 5.21077 5.36737 5.37312 5.39806 5.42802 5.56652 5.58784 5.61635 5.62137 5.69116 5.72683 5.78866 5.87165 6.03958 6.07676 6.22112 6.24868 6.39230 6.55918 6.66378 6.68881 6.75101 6.88106 6.89705 6.95427 7.06419 7.13993 7.44036 7.60901 7.82943 8.01249 8.14290 8.48181 8.71166 9.02524 9.36782 9.64197 11.13107 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002668 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.039299 B =10492.179850 C =11348.503761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.530 5.530 3 C 0.010 3.990 4 C 0.154 3.846 5 H 0.117 0.883 6 C 0.149 3.851 7 N -0.747 5.747 8 C 0.700 3.300 9 O -0.585 6.585 10 N -0.622 5.622 11 C 0.117 3.883 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.878 5.878 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.130 3.870 25 C -0.036 4.036 26 C -0.200 4.200 27 C -0.213 4.213 28 C -0.046 4.046 29 O -0.167 6.167 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.122 0.878 47 H 0.038 0.962 48 H 0.149 0.851 49 H 0.147 0.853 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.445 4.647 4.368 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.252 5.252 3 C -0.138 4.138 4 C 0.044 3.956 5 H 0.135 0.865 6 C 0.023 3.977 7 N -0.408 5.408 8 C 0.402 3.598 9 O -0.463 6.463 10 N -0.359 5.359 11 C -0.008 4.008 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.515 5.515 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.009 3.991 25 C -0.088 4.088 26 C -0.220 4.220 27 C -0.232 4.232 28 C -0.114 4.114 29 O -0.063 6.063 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.140 0.860 47 H 0.057 0.943 48 H 0.166 0.834 49 H 0.165 0.835 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -22.527 4.935 4.545 23.505 hybrid contribution 0.204 0.208 0.490 0.570 sum -22.323 5.144 5.035 23.455 Atomic orbital electron populations 1.22410 0.86793 1.02370 1.00849 1.62130 1.08303 1.15120 1.39659 1.22694 1.01851 0.87952 1.01278 1.20883 0.94919 0.98291 0.81499 0.86479 1.21089 0.89127 1.00901 0.86572 1.45102 1.06069 1.73201 1.16425 1.15923 0.81708 0.78770 0.83429 1.90931 1.55877 1.56512 1.42970 1.47810 1.09994 1.69214 1.08872 1.21470 0.92096 0.96356 0.90843 1.21943 0.98643 0.96664 0.99902 1.21615 0.92894 1.00350 0.99885 1.18970 0.93343 0.93320 0.92302 0.95347 1.21038 0.91193 1.48570 0.95254 0.92499 1.25054 0.98910 0.95120 0.94940 1.69894 1.33448 1.46309 1.01855 0.86679 0.84993 0.78436 0.77992 1.20299 1.21311 1.20348 1.22193 0.74683 0.98871 1.03314 1.23310 1.05235 0.81123 0.99166 1.21672 1.05833 1.00925 0.93526 1.21826 1.07292 0.92538 1.01527 1.24136 1.02858 1.00291 0.84122 1.84177 1.64316 1.26742 1.31104 0.95170 0.91076 0.91251 0.90371 0.91321 0.93584 0.90888 0.91524 0.76415 0.92308 0.91937 0.92250 0.92404 0.93168 0.93251 0.92655 0.86049 0.94331 0.83356 0.83517 0.78329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.27 60.07 0.56 0.75 16 2 N -0.53 -5.14 4.51 -244.58 -1.10 -6.24 16 3 C 0.01 0.10 8.80 60.07 0.53 0.63 16 4 C 0.15 1.57 2.50 -68.87 -0.17 1.40 16 5 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 6 C 0.15 2.02 4.43 -4.04 -0.02 2.01 16 7 N -0.75 -11.40 5.19 -65.22 -0.34 -11.74 16 8 C 0.70 14.59 8.30 -86.92 -0.72 13.86 16 9 O -0.59 -15.06 15.79 5.29 0.08 -14.97 16 10 N -0.62 -12.79 2.98 -178.28 -0.53 -13.32 16 11 C 0.12 1.85 6.38 -3.71 -0.02 1.82 16 12 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 13 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 14 C 0.04 1.00 2.25 -91.66 -0.21 0.80 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.33 8.56 -34.44 -0.29 -14.63 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -26.09 11.40 55.43 0.63 -25.46 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.13 3.22 5.42 -3.56 -0.02 3.20 16 25 C -0.04 -0.38 4.54 -35.63 -0.16 -0.54 16 26 C -0.20 -1.95 10.80 -39.70 -0.43 -2.38 16 27 C -0.21 -1.89 10.91 -39.70 -0.43 -2.32 16 28 C -0.05 -0.40 12.09 29.42 0.36 -0.04 16 29 O -0.17 -1.78 7.44 5.70 0.04 -1.73 16 30 H 0.03 0.26 6.68 -51.93 -0.35 -0.08 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.96 6.18 -51.93 -0.32 0.64 16 34 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.05 0.49 5.28 -51.93 -0.27 0.21 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.00 6.61 -51.93 -0.34 0.66 16 38 H 0.40 5.19 5.63 -40.82 -0.23 4.96 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.81 5.64 -51.93 -0.29 0.51 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 46 H 0.12 3.54 5.14 -51.93 -0.27 3.27 16 47 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 49 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -33.21 387.97 -9.78 -42.98 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.96 Total: 6.57 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.43 Total: 1.55 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -1.34 Total: -56.77 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.13 Total: -16.71 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.21 -9.78 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596090809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.588 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds