Wall clock time and date at job start Tue Mar 31 2020 18:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99810 * 2 1 4 4 C 1.46901 * 110.99847 * 123.95424 * 2 1 3 5 5 H 1.09003 * 109.47019 * 62.73447 * 4 2 1 6 6 C 1.52998 * 109.46985 * 182.73233 * 4 2 1 7 7 N 1.46511 * 109.47309 * 305.00206 * 6 4 2 8 8 C 1.34769 * 120.00302 * 180.02562 * 7 6 4 9 9 O 1.21587 * 120.00135 * 4.97275 * 8 7 6 10 10 N 1.34779 * 120.00146 * 184.96852 * 8 7 6 11 11 C 1.46926 * 120.62917 * 354.91115 * 10 8 7 12 12 C 1.53191 * 108.89135 * 233.67321 * 11 10 8 13 13 C 1.53041 * 109.31277 * 305.29258 * 12 11 10 14 14 C 1.53040 * 109.53640 * 61.36416 * 13 12 11 15 15 H 1.09000 * 109.49499 * 58.62361 * 14 13 12 16 16 C 1.50700 * 109.49854 * 178.68341 * 14 13 12 17 17 H 1.08004 * 119.99839 * 0.02562 * 16 14 13 18 18 C 1.37872 * 120.00358 * 180.02562 * 16 14 13 19 19 N 1.31506 * 120.00089 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00196 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47225 * 59.99161 * 20 18 16 22 22 H 1.48496 * 109.47263 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46671 * 299.99714 * 20 18 16 24 24 C 1.47207 * 120.81564 * 175.04459 * 10 8 7 25 25 C 1.50693 * 109.47139 * 302.72971 * 4 2 1 26 26 C 1.34519 * 125.78739 * 141.18870 * 25 4 2 27 27 C 1.41380 * 106.83996 * 180.02562 * 26 25 4 28 28 C 1.34518 * 106.84346 * 359.97438 * 27 26 25 29 29 O 1.34302 * 108.41779 * 359.73853 * 28 27 26 30 30 H 1.08995 * 109.47283 * 296.04512 * 1 2 3 31 31 H 1.09004 * 109.46656 * 56.04675 * 1 2 3 32 32 H 1.09001 * 109.47216 * 176.04412 * 1 2 3 33 33 H 1.09006 * 109.46806 * 183.10534 * 3 2 1 34 34 H 1.08998 * 109.47236 * 303.10913 * 3 2 1 35 35 H 1.08998 * 109.47217 * 63.10929 * 3 2 1 36 36 H 1.09001 * 109.47250 * 185.00653 * 6 4 2 37 37 H 1.09004 * 109.47474 * 64.99686 * 6 4 2 38 38 H 0.97005 * 119.99492 * 359.97438 * 7 6 4 39 39 H 1.08999 * 109.58637 * 113.81293 * 11 10 8 40 40 H 1.09003 * 109.58581 * 353.53076 * 11 10 8 41 41 H 1.08996 * 109.50013 * 65.24397 * 12 11 10 42 42 H 1.08994 * 109.49794 * 185.34231 * 12 11 10 43 43 H 1.08999 * 109.46254 * 181.38711 * 13 12 11 44 44 H 1.09006 * 109.45814 * 301.36357 * 13 12 11 45 45 H 0.97003 * 120.00723 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.53004 * 6.54235 * 24 10 8 47 47 H 1.08992 * 109.67951 * 246.23611 * 24 10 8 48 48 H 1.07994 * 126.57975 * 359.95963 * 26 25 4 49 49 H 1.08001 * 126.58283 * 180.02562 * 27 26 25 50 50 H 1.07997 * 125.79039 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6861 -1.8074 1.0487 6 6 3.5233 -0.6865 1.1426 7 7 4.0400 -1.1350 -0.1529 8 6 5.3684 -1.1512 -0.3796 9 8 6.1418 -0.8805 0.5186 10 7 5.8396 -1.4674 -1.6021 11 6 4.9260 -1.9045 -2.6665 12 6 5.4179 -3.2441 -3.2234 13 6 6.8752 -3.1025 -3.6689 14 6 7.7445 -2.7312 -2.4653 15 1 7.6519 -3.5004 -1.6986 16 6 9.1839 -2.6237 -2.8985 17 1 9.4523 -2.8019 -3.9294 18 6 10.1581 -2.2979 -1.9789 19 7 9.8313 -2.0805 -0.7238 20 14 11.9422 -2.1639 -2.5161 21 1 12.0677 -1.1142 -3.5589 22 1 12.7852 -1.8038 -1.3478 23 1 12.3919 -3.4669 -3.0687 24 6 7.2790 -1.3858 -1.8998 25 6 1.4583 -0.1903 2.4225 26 6 1.0711 -0.8968 3.4997 27 6 0.6388 0.0377 4.4686 28 6 0.7882 1.2594 3.9258 29 8 1.2906 1.1154 2.6886 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0837 1.3429 -0.0557 34 1 1.6016 1.9118 -0.8608 35 1 1.6917 1.8772 0.9165 36 1 3.9179 -1.3261 1.9322 37 1 3.8331 0.3434 1.3204 38 1 3.4260 -1.4211 -0.8472 39 1 4.9109 -1.1608 -3.4633 40 1 3.9218 -2.0245 -2.2597 41 1 5.3468 -4.0081 -2.4493 42 1 4.8031 -3.5313 -4.0763 43 1 7.2202 -4.0476 -4.0883 44 1 6.9495 -2.3209 -4.4251 45 1 10.5166 -1.8509 -0.0768 46 1 7.8284 -1.1642 -0.9848 47 1 7.4581 -0.5996 -2.6331 48 1 1.0864 -1.9715 3.6040 49 1 0.2618 -0.1862 5.4556 50 1 0.5487 2.1971 4.4050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596090809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:17 Heat of formation + Delta-G solvation = -17.004932 kcal Electronic energy + Delta-G solvation = -30141.899526 eV Core-core repulsion = 26170.541497 eV Total energy + Delta-G solvation = -3971.358029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.63821 -41.26930 -39.24867 -38.24498 -35.60312 -34.99869 -34.04855 -33.37785 -31.89924 -31.37132 -29.14594 -28.32761 -26.98649 -26.17455 -24.92841 -23.40394 -22.93325 -22.70452 -21.59789 -21.07453 -20.33157 -19.10614 -18.26850 -18.10325 -17.42270 -17.22010 -16.88116 -16.56028 -16.11351 -16.02777 -15.63882 -15.17156 -15.13253 -15.01354 -14.90231 -14.44126 -14.24626 -14.05611 -13.89667 -13.68817 -13.54480 -13.49951 -13.17415 -13.06151 -12.83102 -12.71931 -12.66440 -12.48571 -12.26889 -12.21987 -12.19515 -11.81580 -11.58778 -11.20295 -10.91344 -10.87508 -10.79491 -10.48201 -10.13715 -9.61144 -9.37944 -9.20303 -8.06509 -6.24310 0.71378 1.42175 1.44011 1.52319 1.62194 1.79722 2.08653 2.29092 2.44366 2.91252 3.11486 3.23305 3.61836 3.69404 4.01325 4.10899 4.14303 4.21297 4.22268 4.28317 4.33480 4.51833 4.58491 4.61696 4.65593 4.71267 4.74800 4.79481 4.85622 4.90392 4.91817 4.98678 5.01828 5.05255 5.15019 5.27196 5.31134 5.32004 5.36267 5.51804 5.57188 5.59884 5.70047 5.82528 5.93849 5.94075 6.02519 6.20571 6.23008 6.40067 6.89098 7.20891 7.45514 7.74361 8.96182 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002668 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.039299 B =10492.179850 C =11348.503761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.531 5.531 3 C 0.015 3.985 4 C 0.167 3.833 5 H 0.137 0.863 6 C 0.152 3.848 7 N -0.720 5.720 8 C 0.694 3.306 9 O -0.644 6.644 10 N -0.626 5.626 11 C 0.112 3.888 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.016 1.016 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.914 5.914 20 Si 0.957 3.043 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.268 1.268 24 C 0.144 3.856 25 C -0.055 4.055 26 C -0.205 4.205 27 C -0.226 4.226 28 C -0.048 4.048 29 O -0.183 6.183 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.413 0.587 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.105 0.895 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.258 0.742 46 H 0.073 0.927 47 H 0.034 0.966 48 H 0.160 0.840 49 H 0.166 0.834 50 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.098 4.413 2.754 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.133 4.133 4 C 0.057 3.943 5 H 0.154 0.846 6 C 0.026 3.974 7 N -0.380 5.380 8 C 0.395 3.605 9 O -0.526 6.526 10 N -0.362 5.362 11 C -0.010 4.010 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.019 3.981 15 H 0.002 0.998 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.553 5.553 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.193 1.193 24 C 0.022 3.978 25 C -0.107 4.107 26 C -0.225 4.225 27 C -0.245 4.245 28 C -0.115 4.115 29 O -0.079 6.079 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.178 0.822 49 H 0.184 0.816 50 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -25.260 4.679 2.880 25.851 hybrid contribution 0.972 0.298 1.047 1.459 sum -24.288 4.978 3.926 25.102 Atomic orbital electron populations 1.22442 0.85252 1.03416 1.00926 1.62169 1.09553 1.14471 1.39091 1.22601 1.00289 0.88683 1.01734 1.20729 0.91917 0.99520 0.82147 0.84564 1.21112 0.91842 0.99307 0.85100 1.44796 1.04024 1.71739 1.17439 1.16166 0.82983 0.78450 0.82869 1.90890 1.57807 1.58967 1.44897 1.47703 1.09112 1.69312 1.10090 1.21827 0.92551 0.96548 0.90100 1.21904 0.96512 0.96585 1.01310 1.21507 0.94652 1.00496 0.97588 1.18903 0.93807 0.92102 0.93263 0.99760 1.21501 0.92760 1.47762 0.95447 0.91912 1.25916 1.03442 0.94884 0.94856 1.70110 1.34430 1.47639 1.03102 0.85625 0.79628 0.78931 0.77563 1.19154 1.21611 1.19281 1.21594 0.77153 0.98431 1.00672 1.23285 1.06541 0.81355 0.99532 1.21984 1.05201 1.01814 0.93493 1.22153 1.07513 0.92465 1.02325 1.24838 1.01596 1.01691 0.83348 1.84162 1.64730 1.26908 1.32125 0.95934 0.89958 0.89876 0.92867 0.89981 0.93958 0.92366 0.93371 0.74635 0.90362 0.88273 0.93271 0.87707 0.93033 0.92380 0.93265 0.90887 0.94755 0.82186 0.81632 0.75317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.27 127.69 1.18 1.55 16 2 N -0.53 -9.25 4.51 -927.72 -4.18 -13.44 16 3 C 0.01 0.29 8.80 127.69 1.12 1.41 16 4 C 0.17 3.19 2.50 44.17 0.11 3.30 16 5 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 6 C 0.15 4.19 4.43 86.38 0.38 4.57 16 7 N -0.72 -21.67 5.19 -478.52 -2.48 -24.16 16 8 C 0.69 29.72 8.30 179.06 1.49 31.20 16 9 O -0.64 -35.18 15.79 -3.99 -0.06 -35.24 16 10 N -0.63 -25.95 2.98 -836.21 -2.50 -28.44 16 11 C 0.11 3.23 6.38 86.36 0.55 3.78 16 12 C -0.13 -3.71 6.08 30.67 0.19 -3.52 16 13 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 14 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 15 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 16 C -0.54 -30.08 8.56 25.60 0.22 -29.87 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 18 C 0.01 0.48 5.30 84.65 0.45 0.93 16 19 N -0.91 -57.18 11.40 21.44 0.24 -56.94 16 20 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.14 7.45 5.42 86.31 0.47 7.92 16 25 C -0.06 -1.10 4.54 24.83 0.11 -0.99 16 26 C -0.21 -3.75 10.80 22.19 0.24 -3.51 16 27 C -0.23 -3.64 10.91 22.19 0.24 -3.40 16 28 C -0.05 -0.75 12.09 66.97 0.81 0.06 16 29 O -0.18 -3.73 7.44 -2.50 -0.02 -3.75 16 30 H 0.02 0.34 6.68 -2.39 -0.02 0.33 16 31 H 0.08 0.93 8.13 -2.38 -0.02 0.91 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 1.32 6.18 -2.38 -0.01 1.30 16 34 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 35 H 0.04 0.88 5.28 -2.39 -0.01 0.86 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.52 6.61 -2.38 -0.02 1.51 16 38 H 0.41 9.81 5.63 -92.70 -0.52 9.29 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.14 5.64 -2.39 -0.01 2.13 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 46 H 0.07 4.54 5.14 -2.38 -0.01 4.53 16 47 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 49 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 50 H 0.23 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -78.33 387.97 1.14 -77.19 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.42 Total: 26.16 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.70 Total: 11.49 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -8.92 Total: -122.97 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.08 Total: -38.99 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -78.33 1.14 -77.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596090809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.181 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds