Wall clock time and date at job start Tue Mar 31 2020 18:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00002 * 2 1 4 4 C 1.46900 * 111.00247 * 123.95433 * 2 1 3 5 5 H 1.08997 * 109.47212 * 61.34486 * 4 2 1 6 6 C 1.53001 * 109.47171 * 181.34056 * 4 2 1 7 7 N 1.46493 * 109.47201 * 305.00049 * 6 4 2 8 8 C 1.34777 * 120.00100 * 179.97438 * 7 6 4 9 9 O 1.21588 * 119.99789 * 4.64457 * 8 7 6 10 10 N 1.34779 * 120.00058 * 184.64231 * 8 7 6 11 11 C 1.46921 * 120.63255 * 355.12435 * 10 8 7 12 12 C 1.53188 * 108.77533 * 126.43278 * 11 10 8 13 13 C 1.53039 * 109.31252 * 54.63895 * 12 11 10 14 14 C 1.53042 * 109.53676 * 298.63108 * 13 12 11 15 15 H 1.08997 * 109.49552 * 301.38417 * 14 13 12 16 16 C 1.50697 * 109.49945 * 181.31665 * 14 13 12 17 17 H 1.08006 * 119.99757 * 0.07131 * 16 14 13 18 18 C 1.37876 * 120.00344 * 180.34026 * 16 14 13 19 19 N 1.31511 * 119.99506 * 359.73007 * 18 16 14 20 20 Si 1.86800 * 120.00212 * 179.72504 * 18 16 14 21 21 H 1.48498 * 109.47028 * 90.00406 * 20 18 16 22 22 H 1.48499 * 109.46839 * 210.00214 * 20 18 16 23 23 H 1.48500 * 109.47082 * 330.00096 * 20 18 16 24 24 C 1.46932 * 120.60322 * 175.14897 * 10 8 7 25 25 C 1.50697 * 109.47027 * 301.34099 * 4 2 1 26 26 C 1.34514 * 125.78879 * 140.01039 * 25 4 2 27 27 C 1.41390 * 106.84181 * 179.88843 * 26 25 4 28 28 C 1.34517 * 106.83530 * 0.37199 * 27 26 25 29 29 O 1.34298 * 108.42372 * 359.77255 * 28 27 26 30 30 H 1.09002 * 109.46769 * 299.99725 * 1 2 3 31 31 H 1.08990 * 109.47282 * 60.00025 * 1 2 3 32 32 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47294 * 177.99788 * 3 2 1 34 34 H 1.09000 * 109.47026 * 297.99888 * 3 2 1 35 35 H 1.08998 * 109.47114 * 57.99908 * 3 2 1 36 36 H 1.09003 * 109.46842 * 184.99685 * 6 4 2 37 37 H 1.08999 * 109.46973 * 65.00268 * 6 4 2 38 38 H 0.97001 * 120.00340 * 0.02562 * 7 6 4 39 39 H 1.09005 * 109.58512 * 6.64649 * 11 10 8 40 40 H 1.09002 * 109.58550 * 246.22433 * 11 10 8 41 41 H 1.09002 * 109.49909 * 294.68144 * 12 11 10 42 42 H 1.09003 * 109.52618 * 174.60140 * 12 11 10 43 43 H 1.09006 * 109.45885 * 178.61317 * 13 12 11 44 44 H 1.08994 * 109.46046 * 58.65292 * 13 12 11 45 45 H 0.97007 * 119.99688 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.56729 * 113.76406 * 24 10 8 47 47 H 1.08999 * 109.61854 * 353.33451 * 24 10 8 48 48 H 1.08000 * 126.58195 * 0.02562 * 26 25 4 49 49 H 1.07997 * 126.57926 * 180.11893 * 27 26 25 50 50 H 1.08004 * 125.78091 * 179.78671 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6657 -1.8021 1.0618 6 6 3.5246 -0.7152 1.1226 7 7 4.0161 -1.1845 -0.1752 8 6 5.3410 -1.2266 -0.4188 9 8 6.1306 -0.9561 0.4653 10 7 5.7906 -1.5687 -1.6425 11 6 4.8553 -2.0010 -2.6899 12 6 5.0831 -1.1437 -3.9388 13 6 6.5573 -1.2192 -4.3425 14 6 7.4268 -0.6653 -3.2114 15 1 7.1394 0.3652 -3.0030 16 6 8.8758 -0.7101 -3.6227 17 1 9.1497 -1.0941 -4.5943 18 6 9.8524 -0.2662 -2.7565 19 7 9.5188 0.2014 -1.5735 20 14 11.6492 -0.3289 -3.2634 21 1 12.0182 0.9421 -3.9368 22 1 12.4971 -0.5151 -2.0586 23 1 11.8606 -1.4637 -4.1977 24 6 7.2256 -1.5166 -1.9537 25 6 1.4856 -0.1693 2.4240 26 6 1.0781 -0.8596 3.5042 27 6 0.6876 0.0915 4.4748 28 6 0.8720 1.3059 3.9265 29 8 1.3555 1.1419 2.6844 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.0845 1.3426 0.0359 34 1 1.6752 1.8835 -0.9074 35 1 1.6172 1.9058 0.8715 36 1 3.9171 -1.3552 1.9129 37 1 3.8557 0.3101 1.2874 38 1 3.3880 -1.4642 -0.8594 39 1 3.8308 -1.8727 -2.3404 40 1 5.0335 -3.0494 -2.9288 41 1 4.8174 -0.1088 -3.7231 42 1 4.4631 -1.5160 -4.7543 43 1 6.7172 -0.6297 -5.2454 44 1 6.8286 -2.2573 -4.5341 45 1 10.2058 0.5141 -0.9642 46 1 7.5973 -2.5255 -2.1322 47 1 7.7650 -1.0686 -1.1192 48 1 1.0559 -1.9341 3.6106 49 1 0.3095 -0.1172 5.4647 50 1 0.6663 2.2524 4.4044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596090810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:21 Heat of formation + Delta-G solvation = 5.719676 kcal Electronic energy + Delta-G solvation = -30263.005091 eV Core-core repulsion = 26292.632475 eV Total energy + Delta-G solvation = -3970.372616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.90066 -39.72218 -38.21464 -36.64788 -34.10642 -33.36196 -33.11349 -31.70963 -30.92078 -29.65184 -28.18974 -27.50032 -25.07770 -24.81946 -23.66820 -22.09428 -21.96778 -21.71835 -20.23940 -19.95595 -18.78492 -17.66835 -17.25953 -16.50854 -16.24892 -16.03464 -15.74139 -15.05522 -14.78390 -14.72995 -14.48572 -14.05051 -13.71848 -13.61391 -13.40499 -13.17617 -13.08428 -12.88924 -12.61611 -12.52787 -12.39720 -12.27931 -12.01418 -11.86347 -11.85393 -11.60134 -11.28658 -10.93322 -10.84008 -10.43614 -10.31877 -10.16082 -10.15178 -9.80819 -9.37059 -9.03262 -8.91233 -8.84028 -8.64020 -8.59094 -8.35432 -7.53913 -5.92842 -4.01594 1.46427 2.36860 2.65576 3.32564 3.38469 3.42444 3.44638 3.71960 3.96841 4.31093 4.47582 4.59874 4.62672 4.76682 4.83826 4.98107 5.01128 5.23383 5.36881 5.40901 5.41799 5.46325 5.57626 5.59563 5.62621 5.63811 5.68406 5.74068 5.80185 5.89941 6.06754 6.09932 6.23020 6.25626 6.39551 6.59091 6.67062 6.72109 6.75043 6.89117 6.90552 6.96633 7.06231 7.15992 7.43612 7.60812 7.82850 8.00839 8.14142 8.47723 8.71270 9.02011 9.36705 9.63625 11.12133 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002764 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.774768 B =10126.162909 C =10928.681607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.530 5.530 3 C 0.010 3.990 4 C 0.154 3.846 5 H 0.117 0.883 6 C 0.149 3.851 7 N -0.747 5.747 8 C 0.701 3.299 9 O -0.588 6.588 10 N -0.622 5.622 11 C 0.116 3.884 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.130 3.870 25 C -0.036 4.036 26 C -0.201 4.201 27 C -0.214 4.214 28 C -0.045 4.045 29 O -0.166 6.166 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.038 0.962 47 H 0.122 0.878 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 -1.457 6.627 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.252 5.252 3 C -0.138 4.138 4 C 0.044 3.956 5 H 0.134 0.866 6 C 0.023 3.977 7 N -0.407 5.407 8 C 0.402 3.598 9 O -0.465 6.465 10 N -0.358 5.358 11 C -0.008 4.008 12 C -0.170 4.170 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.009 3.991 25 C -0.088 4.088 26 C -0.221 4.221 27 C -0.233 4.233 28 C -0.113 4.113 29 O -0.062 6.062 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.140 0.860 48 H 0.166 0.834 49 H 0.165 0.835 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -21.708 -1.170 6.778 22.772 hybrid contribution 0.202 0.174 0.508 0.573 sum -21.506 -0.996 7.286 22.728 Atomic orbital electron populations 1.22401 0.86820 1.02145 1.01005 1.62125 1.08260 1.15275 1.39520 1.22698 1.01929 0.87786 1.01359 1.20875 0.95158 0.97993 0.81590 0.86559 1.21090 0.89382 1.00831 0.86399 1.45083 1.06085 1.72859 1.16709 1.15923 0.81810 0.78617 0.83408 1.90918 1.54717 1.56605 1.44286 1.47745 1.09806 1.69229 1.09037 1.21489 0.92145 0.98058 0.89143 1.21929 0.98908 0.99921 0.96280 1.21613 0.92786 1.00440 0.99914 1.18982 0.94060 0.95145 0.89767 0.95408 1.21080 0.90721 1.42691 1.01430 0.92440 1.25055 0.99017 0.94969 0.95009 1.69900 1.33244 1.41271 1.07200 0.86612 0.85187 0.78302 0.77993 1.20762 1.21217 1.19951 1.22153 0.75087 0.98932 1.02898 1.23325 1.05230 0.81083 0.99174 1.21657 1.06061 1.00808 0.93555 1.21821 1.07534 0.92451 1.01474 1.24142 1.02979 1.00346 0.83850 1.84194 1.64955 1.26329 1.30731 0.95252 0.90997 0.91337 0.90263 0.91182 0.93667 0.90984 0.91401 0.76407 0.91807 0.92339 0.92181 0.92462 0.93182 0.93269 0.92718 0.94410 0.86017 0.83420 0.83542 0.78320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.21 60.06 0.55 0.75 16 2 N -0.53 -5.34 4.50 -244.59 -1.10 -6.44 16 3 C 0.01 0.11 8.85 60.06 0.53 0.64 16 4 C 0.15 1.58 2.47 -68.87 -0.17 1.41 16 5 H 0.12 1.01 8.13 -51.93 -0.42 0.59 16 6 C 0.15 2.04 4.46 -4.04 -0.02 2.02 16 7 N -0.75 -11.45 5.29 -65.23 -0.35 -11.80 16 8 C 0.70 14.62 8.30 -86.92 -0.72 13.90 16 9 O -0.59 -15.07 15.78 5.29 0.08 -14.99 16 10 N -0.62 -12.79 2.97 -178.50 -0.53 -13.32 16 11 C 0.12 1.83 6.43 -3.72 -0.02 1.81 16 12 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 13 C -0.11 -2.21 5.11 -26.69 -0.14 -2.35 16 14 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.28 8.57 -34.44 -0.30 -14.57 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.05 11.38 55.43 0.63 -25.42 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.13 3.23 5.38 -3.71 -0.02 3.21 16 25 C -0.04 -0.38 4.61 -35.63 -0.16 -0.54 16 26 C -0.20 -1.95 10.80 -39.70 -0.43 -2.38 16 27 C -0.21 -1.91 10.91 -39.70 -0.43 -2.34 16 28 C -0.05 -0.40 12.09 29.42 0.36 -0.05 16 29 O -0.17 -1.82 7.52 5.72 0.04 -1.78 16 30 H 0.03 0.26 6.95 -51.93 -0.36 -0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.07 5.98 -51.92 -0.31 0.76 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.51 5.43 -51.93 -0.28 0.22 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.06 6.51 -51.93 -0.34 0.73 16 38 H 0.40 5.21 5.59 -40.82 -0.23 4.98 16 39 H 0.06 0.82 5.56 -51.93 -0.29 0.53 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.12 3.56 5.14 -51.93 -0.27 3.29 16 48 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 49 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.20 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -33.16 388.21 -9.78 -42.94 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.96 Total: 6.79 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.43 Total: 1.65 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.34 Total: -56.99 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.13 Total: -16.76 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.16 -9.78 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596090810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.664 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds