Wall clock time and date at job start Tue Mar 31 2020 18:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00002 * 2 1 4 4 C 1.46900 * 111.00247 * 123.95433 * 2 1 3 5 5 H 1.08997 * 109.47212 * 61.34486 * 4 2 1 6 6 C 1.53001 * 109.47171 * 181.34056 * 4 2 1 7 7 N 1.46493 * 109.47201 * 305.00049 * 6 4 2 8 8 C 1.34777 * 120.00100 * 179.97438 * 7 6 4 9 9 O 1.21588 * 119.99789 * 4.64457 * 8 7 6 10 10 N 1.34779 * 120.00058 * 184.64231 * 8 7 6 11 11 C 1.46921 * 120.63255 * 355.12435 * 10 8 7 12 12 C 1.53188 * 108.77533 * 126.43278 * 11 10 8 13 13 C 1.53039 * 109.31252 * 54.63895 * 12 11 10 14 14 C 1.53042 * 109.53676 * 298.63108 * 13 12 11 15 15 H 1.08997 * 109.49552 * 301.38417 * 14 13 12 16 16 C 1.50697 * 109.49945 * 181.31665 * 14 13 12 17 17 H 1.08006 * 119.99757 * 0.07131 * 16 14 13 18 18 C 1.37876 * 120.00344 * 180.34026 * 16 14 13 19 19 N 1.31511 * 119.99506 * 359.73007 * 18 16 14 20 20 Si 1.86800 * 120.00212 * 179.72504 * 18 16 14 21 21 H 1.48498 * 109.47028 * 90.00406 * 20 18 16 22 22 H 1.48499 * 109.46839 * 210.00214 * 20 18 16 23 23 H 1.48500 * 109.47082 * 330.00096 * 20 18 16 24 24 C 1.46932 * 120.60322 * 175.14897 * 10 8 7 25 25 C 1.50697 * 109.47027 * 301.34099 * 4 2 1 26 26 C 1.34514 * 125.78879 * 140.01039 * 25 4 2 27 27 C 1.41390 * 106.84181 * 179.88843 * 26 25 4 28 28 C 1.34517 * 106.83530 * 0.37199 * 27 26 25 29 29 O 1.34298 * 108.42372 * 359.77255 * 28 27 26 30 30 H 1.09002 * 109.46769 * 299.99725 * 1 2 3 31 31 H 1.08990 * 109.47282 * 60.00025 * 1 2 3 32 32 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47294 * 177.99788 * 3 2 1 34 34 H 1.09000 * 109.47026 * 297.99888 * 3 2 1 35 35 H 1.08998 * 109.47114 * 57.99908 * 3 2 1 36 36 H 1.09003 * 109.46842 * 184.99685 * 6 4 2 37 37 H 1.08999 * 109.46973 * 65.00268 * 6 4 2 38 38 H 0.97001 * 120.00340 * 0.02562 * 7 6 4 39 39 H 1.09005 * 109.58512 * 6.64649 * 11 10 8 40 40 H 1.09002 * 109.58550 * 246.22433 * 11 10 8 41 41 H 1.09002 * 109.49909 * 294.68144 * 12 11 10 42 42 H 1.09003 * 109.52618 * 174.60140 * 12 11 10 43 43 H 1.09006 * 109.45885 * 178.61317 * 13 12 11 44 44 H 1.08994 * 109.46046 * 58.65292 * 13 12 11 45 45 H 0.97007 * 119.99688 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.56729 * 113.76406 * 24 10 8 47 47 H 1.08999 * 109.61854 * 353.33451 * 24 10 8 48 48 H 1.08000 * 126.58195 * 0.02562 * 26 25 4 49 49 H 1.07997 * 126.57926 * 180.11893 * 27 26 25 50 50 H 1.08004 * 125.78091 * 179.78671 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 1.6657 -1.8021 1.0618 6 6 3.5246 -0.7152 1.1226 7 7 4.0161 -1.1845 -0.1752 8 6 5.3410 -1.2266 -0.4188 9 8 6.1306 -0.9561 0.4653 10 7 5.7906 -1.5687 -1.6425 11 6 4.8553 -2.0010 -2.6899 12 6 5.0831 -1.1437 -3.9388 13 6 6.5573 -1.2192 -4.3425 14 6 7.4268 -0.6653 -3.2114 15 1 7.1394 0.3652 -3.0030 16 6 8.8758 -0.7101 -3.6227 17 1 9.1497 -1.0941 -4.5943 18 6 9.8524 -0.2662 -2.7565 19 7 9.5188 0.2014 -1.5735 20 14 11.6492 -0.3289 -3.2634 21 1 12.0182 0.9421 -3.9368 22 1 12.4971 -0.5151 -2.0586 23 1 11.8606 -1.4637 -4.1977 24 6 7.2256 -1.5166 -1.9537 25 6 1.4856 -0.1693 2.4240 26 6 1.0781 -0.8596 3.5042 27 6 0.6876 0.0915 4.4748 28 6 0.8720 1.3059 3.9265 29 8 1.3555 1.1419 2.6844 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.0845 1.3426 0.0359 34 1 1.6752 1.8835 -0.9074 35 1 1.6172 1.9058 0.8715 36 1 3.9171 -1.3552 1.9129 37 1 3.8557 0.3101 1.2874 38 1 3.3880 -1.4642 -0.8594 39 1 3.8308 -1.8727 -2.3404 40 1 5.0335 -3.0494 -2.9288 41 1 4.8174 -0.1088 -3.7231 42 1 4.4631 -1.5160 -4.7543 43 1 6.7172 -0.6297 -5.2454 44 1 6.8286 -2.2573 -4.5341 45 1 10.2058 0.5141 -0.9642 46 1 7.5973 -2.5255 -2.1322 47 1 7.7650 -1.0686 -1.1192 48 1 1.0559 -1.9341 3.6106 49 1 0.3095 -0.1172 5.4647 50 1 0.6663 2.2524 4.4044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596090810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:21 Heat of formation + Delta-G solvation = -16.902152 kcal Electronic energy + Delta-G solvation = -30263.986047 eV Core-core repulsion = 26292.632475 eV Total energy + Delta-G solvation = -3971.353572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.63049 -41.28152 -39.24949 -38.25412 -35.60850 -35.00600 -34.04315 -33.37891 -31.90651 -31.36958 -29.14204 -28.34596 -26.99458 -26.16938 -24.93048 -23.40843 -22.93652 -22.69389 -21.59994 -21.07226 -20.31842 -19.12997 -18.27004 -18.09730 -17.42289 -17.22053 -16.90766 -16.54746 -16.10102 -16.03181 -15.66326 -15.18486 -15.09921 -15.08459 -14.87860 -14.44129 -14.23475 -14.10266 -13.88067 -13.66868 -13.53989 -13.47756 -13.16621 -13.06413 -12.86819 -12.74755 -12.65008 -12.47464 -12.26367 -12.21724 -12.17754 -11.81089 -11.59570 -11.21328 -10.92864 -10.86889 -10.79317 -10.48628 -10.12945 -9.62279 -9.37348 -9.20048 -8.07639 -6.24831 0.71976 1.41372 1.42762 1.53534 1.62810 1.80020 2.08992 2.31635 2.43881 2.90757 3.11071 3.22997 3.62050 3.70308 4.01573 4.11731 4.15108 4.20586 4.22211 4.27342 4.33275 4.50281 4.58524 4.62724 4.65234 4.70814 4.74366 4.79619 4.85579 4.90425 4.91473 4.98980 5.02189 5.04774 5.15046 5.26265 5.31084 5.33119 5.36782 5.52211 5.57911 5.59768 5.70154 5.82681 5.93470 5.93546 6.01861 6.21348 6.23306 6.39820 6.88529 7.20920 7.44996 7.74096 8.95445 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002764 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.774768 B =10126.162909 C =10928.681607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.531 5.531 3 C 0.016 3.984 4 C 0.166 3.834 5 H 0.141 0.859 6 C 0.151 3.849 7 N -0.719 5.719 8 C 0.694 3.306 9 O -0.645 6.645 10 N -0.626 5.626 11 C 0.111 3.889 12 C -0.124 4.124 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.016 1.016 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.145 3.855 25 C -0.057 4.057 26 C -0.202 4.202 27 C -0.225 4.225 28 C -0.050 4.050 29 O -0.185 6.185 30 H 0.021 0.979 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.413 0.587 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.258 0.742 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.164 0.836 49 H 0.167 0.833 50 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.268 -2.852 5.440 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.253 5.253 3 C -0.132 4.132 4 C 0.057 3.943 5 H 0.159 0.841 6 C 0.026 3.974 7 N -0.380 5.380 8 C 0.396 3.604 9 O -0.527 6.527 10 N -0.362 5.362 11 C -0.011 4.011 12 C -0.162 4.162 13 C -0.142 4.142 14 C 0.020 3.980 15 H 0.002 0.998 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.185 1.185 24 C 0.022 3.978 25 C -0.109 4.109 26 C -0.222 4.222 27 C -0.244 4.244 28 C -0.117 4.117 29 O -0.081 6.081 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.254 0.746 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.122 0.878 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.181 0.819 49 H 0.185 0.815 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -24.416 -2.588 5.542 25.170 hybrid contribution 0.964 0.649 0.929 1.488 sum -23.452 -1.939 6.471 24.406 Atomic orbital electron populations 1.22434 0.85162 1.03299 1.01068 1.62160 1.09606 1.14313 1.39230 1.22574 1.00009 0.88850 1.01767 1.20752 0.92110 0.99381 0.82074 0.84109 1.21121 0.92194 0.98976 0.85118 1.44783 1.04081 1.71401 1.17707 1.16173 0.83067 0.78294 0.82915 1.90876 1.56649 1.58978 1.46181 1.47641 1.09007 1.69288 1.10224 1.21852 0.92714 0.98938 0.87584 1.21882 0.96636 0.99770 0.97872 1.21506 0.94602 1.00373 0.97757 1.18910 0.94225 0.93053 0.91856 0.99760 1.21531 0.92268 1.42022 1.01488 0.91910 1.25915 1.03591 0.94727 0.94890 1.70111 1.34276 1.42558 1.08421 0.85562 0.79741 0.78781 0.77622 1.20131 1.21467 1.18513 1.21551 0.77549 0.97803 1.00937 1.23323 1.06668 0.81244 0.99640 1.21985 1.05128 1.01822 0.93295 1.22160 1.07605 0.92289 1.02315 1.24829 1.01912 1.01824 0.83115 1.84172 1.65452 1.26696 1.31827 0.96007 0.90076 0.89627 0.93235 0.90280 0.93838 0.91810 0.93975 0.74628 0.88187 0.90271 0.93307 0.87803 0.93049 0.92404 0.93275 0.94911 0.90867 0.81869 0.81550 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.21 127.69 1.18 1.56 16 2 N -0.53 -9.78 4.50 -927.74 -4.17 -13.95 16 3 C 0.02 0.35 8.85 127.69 1.13 1.48 16 4 C 0.17 3.20 2.47 44.17 0.11 3.31 16 5 H 0.14 2.03 8.13 -2.39 -0.02 2.01 16 6 C 0.15 4.21 4.46 86.38 0.39 4.60 16 7 N -0.72 -21.80 5.29 -478.54 -2.53 -24.33 16 8 C 0.69 29.78 8.30 179.05 1.49 31.27 16 9 O -0.64 -35.13 15.78 -3.99 -0.06 -35.19 16 10 N -0.63 -25.96 2.97 -836.90 -2.49 -28.45 16 11 C 0.11 3.21 6.43 86.36 0.56 3.76 16 12 C -0.12 -3.67 6.08 30.67 0.19 -3.48 16 13 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 14 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 15 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 16 C -0.53 -29.98 8.57 25.60 0.22 -29.76 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.01 0.46 5.30 84.66 0.45 0.91 16 19 N -0.91 -57.13 11.38 21.45 0.24 -56.88 16 20 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.14 7.47 5.38 86.36 0.47 7.94 16 25 C -0.06 -1.14 4.61 24.83 0.11 -1.03 16 26 C -0.20 -3.60 10.80 22.19 0.24 -3.36 16 27 C -0.22 -3.61 10.91 22.19 0.24 -3.37 16 28 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 29 O -0.18 -3.95 7.52 -2.45 -0.02 -3.96 16 30 H 0.02 0.35 6.95 -2.39 -0.02 0.33 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.39 5.98 -2.38 -0.01 1.37 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.04 0.98 5.43 -2.39 -0.01 0.96 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.41 6.51 -2.39 -0.02 1.39 16 38 H 0.41 9.86 5.59 -92.71 -0.52 9.34 16 39 H 0.10 2.16 5.56 -2.38 -0.01 2.15 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 46 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 4.56 5.14 -2.39 -0.01 4.55 16 48 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 49 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 50 H 0.23 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -78.44 388.21 1.12 -77.33 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.42 Total: 26.40 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 7.70 Total: 11.87 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -8.95 Total: -123.61 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.08 Total: -39.16 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -78.44 1.12 -77.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596090810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.427 kcal (2) G-P(sol) polarization free energy of solvation -78.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds