Wall clock time and date at job start Tue Mar 31 2020 18:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99953 * 2 1 4 4 C 1.46902 * 111.00218 * 123.94725 * 2 1 3 5 5 H 1.09002 * 109.47316 * 181.30264 * 4 2 1 6 6 C 1.53006 * 109.46502 * 61.30380 * 4 2 1 7 7 N 1.46490 * 109.47175 * 55.00025 * 6 4 2 8 8 C 1.34781 * 120.00058 * 179.97438 * 7 6 4 9 9 O 1.21590 * 119.99663 * 4.95642 * 8 7 6 10 10 N 1.34776 * 120.00319 * 184.95466 * 8 7 6 11 11 C 1.46925 * 120.62933 * 354.79875 * 10 8 7 12 12 C 1.53196 * 108.89373 * 233.56035 * 11 10 8 13 13 C 1.53073 * 109.29266 * 305.57995 * 12 11 10 14 14 C 1.53035 * 109.66097 * 61.15463 * 13 12 11 15 15 H 1.08999 * 109.49913 * 58.64566 * 14 13 12 16 16 C 1.50696 * 109.49951 * 178.74886 * 14 13 12 17 17 H 1.08005 * 119.99815 * 359.83356 * 16 14 13 18 18 C 1.37871 * 120.00266 * 179.83882 * 16 14 13 19 19 N 1.31520 * 119.99926 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00468 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46596 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47246 * 119.99659 * 20 18 16 23 23 H 1.48501 * 109.47477 * 240.00297 * 20 18 16 24 24 C 1.46927 * 120.63172 * 174.82306 * 10 8 7 25 25 C 1.50702 * 109.47229 * 301.30427 * 4 2 1 26 26 C 1.34514 * 125.78936 * 228.17182 * 25 4 2 27 27 C 1.41375 * 106.84100 * 179.89265 * 26 25 4 28 28 C 1.34510 * 106.84294 * 0.37070 * 27 26 25 29 29 O 1.34302 * 125.78877 * 48.48688 * 25 4 2 30 30 H 1.09005 * 109.47344 * 304.79276 * 1 2 3 31 31 H 1.08998 * 109.47535 * 64.79486 * 1 2 3 32 32 H 1.08994 * 109.47159 * 184.79895 * 1 2 3 33 33 H 1.09000 * 109.47342 * 183.95481 * 3 2 1 34 34 H 1.09008 * 109.47304 * 303.95018 * 3 2 1 35 35 H 1.08998 * 109.47777 * 63.95148 * 3 2 1 36 36 H 1.08998 * 109.47229 * 294.99439 * 6 4 2 37 37 H 1.09005 * 109.46496 * 175.00084 * 6 4 2 38 38 H 0.97000 * 120.00643 * 359.97438 * 7 6 4 39 39 H 1.09002 * 109.58844 * 353.41858 * 11 10 8 40 40 H 1.08997 * 109.58925 * 113.69990 * 11 10 8 41 41 H 1.08998 * 109.49781 * 65.38838 * 12 11 10 42 42 H 1.09002 * 109.49675 * 185.48608 * 12 11 10 43 43 H 1.09003 * 109.34792 * 301.12293 * 13 12 11 44 44 H 1.09004 * 109.43914 * 181.24206 * 13 12 11 45 45 H 0.96997 * 119.99563 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.58280 * 246.15640 * 24 10 8 47 47 H 1.09000 * 109.58703 * 6.58345 * 24 10 8 48 48 H 1.07998 * 126.57763 * 0.02647 * 26 25 4 49 49 H 1.07999 * 126.57851 * 180.12808 * 27 26 25 50 50 H 1.08005 * 125.79485 * 179.78949 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7658 1.1377 5 1 3.0848 -0.7303 1.1267 6 6 1.5315 -2.2200 1.0318 7 7 1.9239 -2.7642 -0.2704 8 6 1.6189 -4.0381 -0.5881 9 8 0.9408 -4.7073 0.1674 10 7 2.0656 -4.5701 -1.7430 11 6 2.7887 -3.7424 -2.7181 12 6 2.1044 -3.8716 -4.0827 13 6 2.0054 -5.3516 -4.4607 14 6 1.1614 -6.0931 -3.4215 15 1 0.1689 -5.6452 -3.3722 16 6 1.0406 -7.5431 -3.8135 17 1 1.5158 -7.9001 -4.7153 18 6 0.3235 -8.4141 -3.0210 19 7 -0.2548 -7.9795 -1.9226 20 14 0.1732 -10.2114 -3.5072 21 1 0.9099 -10.4443 -4.7755 22 1 0.7501 -11.0638 -2.4366 23 1 -1.2591 -10.5552 -3.6958 24 6 1.8382 -5.9885 -2.0512 25 6 1.4863 -0.1684 2.4241 26 6 2.2326 0.1285 3.5031 27 6 1.3555 0.6672 4.4722 28 6 0.1243 0.6596 3.9306 29 8 0.2095 0.1523 2.6899 30 1 -0.3634 0.5864 0.8440 31 1 -0.3634 0.4376 -0.9298 32 1 -0.3633 -1.0240 0.0860 33 1 3.0827 1.3433 -0.0709 34 1 1.5898 1.9164 -0.8525 35 1 1.7043 1.8725 0.9232 36 1 0.4470 -2.2636 1.1321 37 1 1.9936 -2.8074 1.8253 38 1 2.4032 -2.2079 -0.9042 39 1 2.7710 -2.7007 -2.3977 40 1 3.8210 -4.0841 -2.7932 41 1 1.1033 -3.4439 -4.0295 42 1 2.6882 -3.3401 -4.8342 43 1 3.0054 -5.7841 -4.4919 44 1 1.5387 -5.4451 -5.4413 45 1 -0.7596 -8.5922 -1.3653 46 1 2.7923 -6.5150 -2.0737 47 1 1.1933 -6.4289 -1.2906 48 1 3.2979 -0.0148 3.6081 49 1 1.6221 1.0142 5.4596 50 1 -0.7796 1.0033 4.4116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596090811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:25 Heat of formation + Delta-G solvation = 5.098851 kcal Electronic energy + Delta-G solvation = -30165.873805 eV Core-core repulsion = 26195.474268 eV Total energy + Delta-G solvation = -3970.399537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91196 -39.69039 -38.20751 -36.63660 -34.10110 -33.35359 -33.13062 -31.71101 -30.92601 -29.64166 -28.14864 -27.57958 -25.06718 -24.80701 -23.65824 -22.13648 -21.96161 -21.71216 -20.25799 -19.93822 -18.78874 -17.64957 -17.24422 -16.55934 -16.24906 -16.03584 -15.74451 -15.09245 -14.74834 -14.68760 -14.46006 -14.07487 -13.72431 -13.57630 -13.38000 -13.17808 -13.03352 -12.90900 -12.69484 -12.51833 -12.42075 -12.30688 -12.02825 -11.88986 -11.84228 -11.61419 -11.31921 -10.94418 -10.81693 -10.42230 -10.30763 -10.15855 -10.15368 -9.79186 -9.34211 -9.01821 -8.90757 -8.83191 -8.65833 -8.58451 -8.34973 -7.52569 -5.91252 -4.00422 1.44987 2.35231 2.67459 3.32882 3.38418 3.43112 3.46057 3.68873 3.97272 4.30447 4.48417 4.59412 4.64255 4.75791 4.84149 4.96474 4.98367 5.20123 5.37546 5.37848 5.41313 5.46294 5.56209 5.59212 5.61413 5.62009 5.67706 5.73918 5.78126 5.89215 6.05152 6.08253 6.21546 6.25936 6.40218 6.58401 6.67558 6.69831 6.76459 6.89327 6.90929 6.96915 7.07493 7.15082 7.45626 7.62585 7.84323 8.02268 8.15542 8.49018 8.72747 9.03579 9.38644 9.64823 11.13451 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.002708 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.731238 B =10338.683062 C =11224.528833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.529 5.529 3 C 0.023 3.977 4 C 0.153 3.847 5 H 0.116 0.884 6 C 0.150 3.850 7 N -0.746 5.746 8 C 0.700 3.300 9 O -0.586 6.586 10 N -0.622 5.622 11 C 0.116 3.884 12 C -0.132 4.132 13 C -0.110 4.110 14 C 0.039 3.961 15 H 0.028 0.972 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.877 5.877 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.129 3.871 25 C -0.037 4.037 26 C -0.200 4.200 27 C -0.215 4.215 28 C -0.044 4.044 29 O -0.164 6.164 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.262 0.738 46 H 0.038 0.962 47 H 0.123 0.877 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 22.088 7.863 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.251 5.251 3 C -0.125 4.125 4 C 0.044 3.956 5 H 0.134 0.866 6 C 0.024 3.976 7 N -0.406 5.406 8 C 0.401 3.599 9 O -0.463 6.463 10 N -0.359 5.359 11 C -0.008 4.008 12 C -0.171 4.171 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.515 5.515 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C 0.009 3.991 25 C -0.089 4.089 26 C -0.220 4.220 27 C -0.234 4.234 28 C -0.112 4.112 29 O -0.060 6.060 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.140 0.860 48 H 0.165 0.835 49 H 0.165 0.835 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.464 21.221 7.913 23.298 hybrid contribution -0.029 -0.119 0.553 0.566 sum 5.435 21.102 8.466 23.377 Atomic orbital electron populations 1.22668 0.86166 1.03411 1.01283 1.62159 1.09424 1.14096 1.39459 1.22414 1.00704 0.88546 1.00825 1.20854 0.99970 0.93194 0.81615 0.86604 1.21061 1.00739 0.89706 0.86060 1.45071 1.64488 1.12608 1.18481 1.15938 0.80315 0.81134 0.82479 1.90930 1.42565 1.61031 1.51776 1.47738 1.58582 1.12739 1.16805 1.21475 0.95556 0.93855 0.89929 1.21937 1.00394 0.99178 0.95571 1.21618 1.00404 0.92725 0.99979 1.18979 0.94268 0.95035 0.89716 0.95360 1.21114 1.32889 0.93259 1.08611 0.92404 1.25063 0.95296 0.98681 0.95054 1.69923 1.33323 1.34880 1.13360 0.86568 0.77729 0.85438 0.78437 1.19846 1.21026 1.21085 1.22151 0.99544 0.75197 1.02246 1.23302 0.81860 1.04672 0.99091 1.21656 1.01051 1.05766 0.93553 1.21816 0.93075 1.06926 1.01566 1.24151 1.00205 1.02903 0.83971 1.84226 1.28710 1.62432 1.30652 0.93772 0.91170 0.90429 0.91187 0.91008 0.95344 0.91341 0.91159 0.76479 0.91842 0.92401 0.92224 0.92416 0.93298 0.93192 0.92789 0.94391 0.85959 0.83450 0.83543 0.78288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.69 60.06 0.52 0.65 16 2 N -0.53 -5.26 4.45 -244.58 -1.09 -6.34 16 3 C 0.02 0.18 9.36 60.07 0.56 0.75 16 4 C 0.15 1.56 2.39 -68.86 -0.16 1.40 16 5 H 0.12 0.99 8.10 -51.93 -0.42 0.57 16 6 C 0.15 2.06 4.71 -4.04 -0.02 2.04 16 7 N -0.75 -11.49 5.30 -65.23 -0.35 -11.83 16 8 C 0.70 14.69 8.29 -86.91 -0.72 13.97 16 9 O -0.59 -15.15 15.77 5.29 0.08 -15.07 16 10 N -0.62 -12.86 2.97 -178.49 -0.53 -13.39 16 11 C 0.12 1.84 6.38 -3.71 -0.02 1.82 16 12 C -0.13 -2.18 6.09 -26.59 -0.16 -2.34 16 13 C -0.11 -2.22 5.10 -26.68 -0.14 -2.36 16 14 C 0.04 0.99 2.26 -91.65 -0.21 0.79 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.32 8.56 -34.44 -0.29 -14.62 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -26.15 11.39 55.43 0.63 -25.52 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.13 3.22 5.41 -3.71 -0.02 3.20 16 25 C -0.04 -0.38 4.64 -35.62 -0.17 -0.55 16 26 C -0.20 -1.91 10.79 -39.71 -0.43 -2.34 16 27 C -0.21 -1.89 10.91 -39.71 -0.43 -2.32 16 28 C -0.04 -0.39 12.09 29.41 0.36 -0.03 16 29 O -0.16 -1.80 7.73 5.70 0.04 -1.76 16 30 H 0.04 0.47 5.59 -51.93 -0.29 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.01 6.03 -51.93 -0.31 0.69 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.03 0.24 7.26 -51.93 -0.38 -0.13 16 36 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 5.21 5.63 -40.82 -0.23 4.98 16 39 H 0.06 0.82 5.65 -51.93 -0.29 0.53 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.12 3.58 5.11 -51.93 -0.27 3.32 16 48 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 49 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 50 H 0.20 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -33.52 389.10 -9.78 -43.30 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.99 Total: 6.49 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.43 Total: 1.70 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -1.33 Total: -57.09 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.13 Total: -16.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.52 -9.78 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596090811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.396 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds