Wall clock time and date at job start Tue Mar 31 2020 18:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99953 * 2 1 4 4 C 1.46902 * 111.00218 * 123.94725 * 2 1 3 5 5 H 1.09002 * 109.47316 * 181.30264 * 4 2 1 6 6 C 1.53006 * 109.46502 * 61.30380 * 4 2 1 7 7 N 1.46490 * 109.47175 * 55.00025 * 6 4 2 8 8 C 1.34781 * 120.00058 * 179.97438 * 7 6 4 9 9 O 1.21590 * 119.99663 * 4.95642 * 8 7 6 10 10 N 1.34776 * 120.00319 * 184.95466 * 8 7 6 11 11 C 1.46925 * 120.62933 * 354.79875 * 10 8 7 12 12 C 1.53196 * 108.89373 * 233.56035 * 11 10 8 13 13 C 1.53073 * 109.29266 * 305.57995 * 12 11 10 14 14 C 1.53035 * 109.66097 * 61.15463 * 13 12 11 15 15 H 1.08999 * 109.49913 * 58.64566 * 14 13 12 16 16 C 1.50696 * 109.49951 * 178.74886 * 14 13 12 17 17 H 1.08005 * 119.99815 * 359.83356 * 16 14 13 18 18 C 1.37871 * 120.00266 * 179.83882 * 16 14 13 19 19 N 1.31520 * 119.99926 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00468 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46596 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47246 * 119.99659 * 20 18 16 23 23 H 1.48501 * 109.47477 * 240.00297 * 20 18 16 24 24 C 1.46927 * 120.63172 * 174.82306 * 10 8 7 25 25 C 1.50702 * 109.47229 * 301.30427 * 4 2 1 26 26 C 1.34514 * 125.78936 * 228.17182 * 25 4 2 27 27 C 1.41375 * 106.84100 * 179.89265 * 26 25 4 28 28 C 1.34510 * 106.84294 * 0.37070 * 27 26 25 29 29 O 1.34302 * 125.78877 * 48.48688 * 25 4 2 30 30 H 1.09005 * 109.47344 * 304.79276 * 1 2 3 31 31 H 1.08998 * 109.47535 * 64.79486 * 1 2 3 32 32 H 1.08994 * 109.47159 * 184.79895 * 1 2 3 33 33 H 1.09000 * 109.47342 * 183.95481 * 3 2 1 34 34 H 1.09008 * 109.47304 * 303.95018 * 3 2 1 35 35 H 1.08998 * 109.47777 * 63.95148 * 3 2 1 36 36 H 1.08998 * 109.47229 * 294.99439 * 6 4 2 37 37 H 1.09005 * 109.46496 * 175.00084 * 6 4 2 38 38 H 0.97000 * 120.00643 * 359.97438 * 7 6 4 39 39 H 1.09002 * 109.58844 * 353.41858 * 11 10 8 40 40 H 1.08997 * 109.58925 * 113.69990 * 11 10 8 41 41 H 1.08998 * 109.49781 * 65.38838 * 12 11 10 42 42 H 1.09002 * 109.49675 * 185.48608 * 12 11 10 43 43 H 1.09003 * 109.34792 * 301.12293 * 13 12 11 44 44 H 1.09004 * 109.43914 * 181.24206 * 13 12 11 45 45 H 0.96997 * 119.99563 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.58280 * 246.15640 * 24 10 8 47 47 H 1.09000 * 109.58703 * 6.58345 * 24 10 8 48 48 H 1.07998 * 126.57763 * 0.02647 * 26 25 4 49 49 H 1.07999 * 126.57851 * 180.12808 * 27 26 25 50 50 H 1.08005 * 125.79485 * 179.78949 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7658 1.1377 5 1 3.0848 -0.7303 1.1267 6 6 1.5315 -2.2200 1.0318 7 7 1.9239 -2.7642 -0.2704 8 6 1.6189 -4.0381 -0.5881 9 8 0.9408 -4.7073 0.1674 10 7 2.0656 -4.5701 -1.7430 11 6 2.7887 -3.7424 -2.7181 12 6 2.1044 -3.8716 -4.0827 13 6 2.0054 -5.3516 -4.4607 14 6 1.1614 -6.0931 -3.4215 15 1 0.1689 -5.6452 -3.3722 16 6 1.0406 -7.5431 -3.8135 17 1 1.5158 -7.9001 -4.7153 18 6 0.3235 -8.4141 -3.0210 19 7 -0.2548 -7.9795 -1.9226 20 14 0.1732 -10.2114 -3.5072 21 1 0.9099 -10.4443 -4.7755 22 1 0.7501 -11.0638 -2.4366 23 1 -1.2591 -10.5552 -3.6958 24 6 1.8382 -5.9885 -2.0512 25 6 1.4863 -0.1684 2.4241 26 6 2.2326 0.1285 3.5031 27 6 1.3555 0.6672 4.4722 28 6 0.1243 0.6596 3.9306 29 8 0.2095 0.1523 2.6899 30 1 -0.3634 0.5864 0.8440 31 1 -0.3634 0.4376 -0.9298 32 1 -0.3633 -1.0240 0.0860 33 1 3.0827 1.3433 -0.0709 34 1 1.5898 1.9164 -0.8525 35 1 1.7043 1.8725 0.9232 36 1 0.4470 -2.2636 1.1321 37 1 1.9936 -2.8074 1.8253 38 1 2.4032 -2.2079 -0.9042 39 1 2.7710 -2.7007 -2.3977 40 1 3.8210 -4.0841 -2.7932 41 1 1.1033 -3.4439 -4.0295 42 1 2.6882 -3.3401 -4.8342 43 1 3.0054 -5.7841 -4.4919 44 1 1.5387 -5.4451 -5.4413 45 1 -0.7596 -8.5922 -1.3653 46 1 2.7923 -6.5150 -2.0737 47 1 1.1933 -6.4289 -1.2906 48 1 3.2979 -0.0148 3.6081 49 1 1.6221 1.0142 5.4596 50 1 -0.7796 1.0033 4.4116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596090811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:24 Heat of formation + Delta-G solvation = -17.874692 kcal Electronic energy + Delta-G solvation = -30166.870013 eV Core-core repulsion = 26195.474268 eV Total energy + Delta-G solvation = -3971.395744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.63265 -41.25979 -39.22064 -38.24610 -35.61112 -35.00352 -34.04078 -33.38690 -31.91358 -31.36731 -29.08285 -28.40227 -26.99189 -26.15767 -24.90753 -23.41180 -22.95911 -22.68282 -21.59280 -21.07940 -20.32422 -19.10575 -18.27121 -18.07868 -17.45168 -17.19720 -16.94544 -16.54144 -16.11620 -16.01465 -15.60445 -15.18267 -15.10606 -15.04511 -14.79816 -14.50378 -14.21751 -14.09115 -13.85120 -13.73273 -13.54760 -13.46657 -13.18559 -13.08142 -12.89435 -12.73436 -12.62532 -12.47806 -12.26698 -12.23021 -12.16735 -11.80308 -11.58800 -11.19163 -10.92229 -10.86270 -10.78174 -10.49573 -10.11850 -9.61980 -9.38346 -9.19100 -8.06815 -6.24591 0.71662 1.41002 1.42352 1.54669 1.63496 1.82615 2.10167 2.30009 2.44045 2.89874 3.12196 3.23205 3.61404 3.73886 4.01439 4.11463 4.15085 4.20507 4.22016 4.27327 4.33883 4.49731 4.58221 4.63758 4.65419 4.71457 4.75410 4.79780 4.85711 4.90235 4.90590 4.98650 5.02768 5.05350 5.14933 5.24073 5.31400 5.32236 5.36507 5.53549 5.57895 5.60421 5.71260 5.83527 5.93932 5.94398 6.03056 6.20898 6.23984 6.40317 6.89306 7.22031 7.45360 7.75557 8.96202 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.002708 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.731238 B =10338.683062 C =11224.528833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.026 3.974 4 C 0.166 3.834 5 H 0.141 0.859 6 C 0.152 3.848 7 N -0.718 5.718 8 C 0.693 3.307 9 O -0.644 6.644 10 N -0.626 5.626 11 C 0.111 3.889 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.038 3.962 15 H -0.018 1.018 16 C -0.533 4.533 17 H 0.063 0.937 18 C 0.007 3.993 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.144 3.856 25 C -0.058 4.058 26 C -0.200 4.200 27 C -0.225 4.225 28 C -0.050 4.050 29 O -0.185 6.185 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.022 0.978 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.258 0.742 46 H 0.036 0.964 47 H 0.073 0.927 48 H 0.165 0.835 49 H 0.167 0.833 50 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.512 24.296 6.962 26.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.255 5.255 3 C -0.121 4.121 4 C 0.057 3.943 5 H 0.159 0.841 6 C 0.027 3.973 7 N -0.379 5.379 8 C 0.394 3.606 9 O -0.526 6.526 10 N -0.362 5.362 11 C -0.011 4.011 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.018 3.982 15 H 0.000 1.000 16 C -0.572 4.572 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.553 5.553 20 Si 0.783 3.217 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.210 1.210 24 C 0.021 3.979 25 C -0.110 4.110 26 C -0.220 4.220 27 C -0.244 4.244 28 C -0.117 4.117 29 O -0.081 6.081 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.182 0.818 49 H 0.185 0.815 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.875 23.503 6.970 25.749 hybrid contribution -0.796 -0.743 0.880 1.400 sum 7.079 22.760 7.850 25.095 Atomic orbital electron populations 1.22551 0.87132 1.01558 1.01728 1.62181 1.08636 1.15491 1.39184 1.22454 1.01726 0.87042 1.00874 1.20721 1.01070 0.90441 0.82087 0.84120 1.21099 0.99218 0.92287 0.84721 1.44772 1.63236 1.10546 1.19298 1.16193 0.79906 0.82371 0.82099 1.90889 1.45171 1.62921 1.53654 1.47638 1.58952 1.11774 1.17828 1.21843 0.95856 0.95002 0.88379 1.21900 1.00730 0.96548 0.97084 1.21508 0.99590 0.94978 0.98136 1.18913 0.93023 0.94514 0.91703 0.99967 1.21553 1.32421 0.94689 1.08534 0.91888 1.25929 0.95091 1.03258 0.94920 1.70136 1.34343 1.36220 1.14640 0.85506 0.77670 0.79958 0.78519 1.18292 1.20872 1.20999 1.21553 0.98099 0.77748 1.00547 1.23316 0.82047 1.06093 0.99585 1.21986 1.02024 1.04827 0.93187 1.22158 0.92934 1.06887 1.02408 1.24835 1.01598 1.02033 0.83248 1.84206 1.29190 1.62959 1.31789 0.93770 0.90333 0.93335 0.89373 0.90170 0.95946 0.93968 0.91983 0.74659 0.88258 0.90076 0.93568 0.87685 0.92270 0.93124 0.93296 0.94618 0.90825 0.81752 0.81513 0.75539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.69 127.69 1.11 1.50 16 2 N -0.53 -9.64 4.45 -927.71 -4.12 -13.76 16 3 C 0.03 0.35 9.36 127.69 1.19 1.54 16 4 C 0.17 3.17 2.39 44.17 0.11 3.27 16 5 H 0.14 1.98 8.10 -2.39 -0.02 1.96 16 6 C 0.15 4.24 4.71 86.38 0.41 4.65 16 7 N -0.72 -21.82 5.30 -478.53 -2.54 -24.36 16 8 C 0.69 29.90 8.29 179.05 1.49 31.39 16 9 O -0.64 -35.51 15.77 -4.00 -0.06 -35.57 16 10 N -0.63 -26.04 2.97 -836.89 -2.49 -28.53 16 11 C 0.11 3.21 6.38 86.36 0.55 3.76 16 12 C -0.12 -3.74 6.09 30.68 0.19 -3.56 16 13 C -0.10 -4.10 5.10 30.63 0.16 -3.95 16 14 C 0.04 1.97 2.26 -11.46 -0.03 1.94 16 15 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 16 C -0.53 -30.03 8.56 25.60 0.22 -29.81 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 18 C 0.01 0.42 5.30 84.65 0.45 0.86 16 19 N -0.91 -57.42 11.39 21.45 0.24 -57.18 16 20 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 C 0.14 7.42 5.41 86.36 0.47 7.89 16 25 C -0.06 -1.16 4.64 24.83 0.12 -1.05 16 26 C -0.20 -3.47 10.79 22.19 0.24 -3.23 16 27 C -0.22 -3.55 10.91 22.19 0.24 -3.31 16 28 C -0.05 -0.81 12.09 66.97 0.81 0.00 16 29 O -0.18 -3.98 7.73 -2.52 -0.02 -4.00 16 30 H 0.04 0.94 5.59 -2.38 -0.01 0.93 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.32 6.03 -2.39 -0.01 1.30 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.02 0.33 7.26 -2.39 -0.02 0.31 16 36 H 0.04 1.42 6.51 -2.39 -0.02 1.40 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.41 9.83 5.63 -92.71 -0.52 9.31 16 39 H 0.10 2.16 5.65 -2.39 -0.01 2.15 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 46 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 4.59 5.11 -2.39 -0.01 4.58 16 48 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 49 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 50 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -79.54 389.10 1.17 -78.37 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.42 Total: 25.83 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 7.71 Total: 11.90 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -8.90 Total: -123.83 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.08 Total: -39.57 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.54 1.17 -78.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596090811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.498 kcal (2) G-P(sol) polarization free energy of solvation -79.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds