Wall clock time and date at job start Tue Mar 31 2020 18:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 O 1.42902 * 109.46932 * 65.00024 * 4 3 2 6 6 C 1.42900 * 114.00007 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47002 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.47465 * 64.99961 * 7 6 5 9 9 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 10 10 O 1.21583 * 119.99943 * 179.97438 * 9 2 1 11 11 N 1.34777 * 120.00128 * 359.97438 * 9 2 1 12 12 C 1.46494 * 120.00401 * 180.02562 * 11 9 2 13 13 H 1.09000 * 109.46707 * 35.00079 * 12 11 9 14 14 C 1.52996 * 109.47500 * 155.00136 * 12 11 9 15 15 C 1.50695 * 109.47401 * 295.00243 * 14 12 11 16 16 H 1.08003 * 119.99621 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00380 * 179.97438 * 15 14 12 18 18 N 1.31521 * 120.00062 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00301 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46763 * 90.00323 * 19 17 15 21 21 H 1.48493 * 109.47220 * 210.00186 * 19 17 15 22 22 H 1.48500 * 109.46999 * 330.00322 * 19 17 15 23 23 C 1.50703 * 109.47225 * 275.00579 * 12 11 9 24 24 C 1.38242 * 119.99836 * 319.72194 * 23 12 11 25 25 C 1.38236 * 119.99858 * 179.78481 * 24 23 12 26 26 C 1.38236 * 119.99671 * 0.44691 * 25 24 23 27 27 C 1.38227 * 120.00461 * 359.80789 * 26 25 24 28 28 C 1.38230 * 120.00362 * 139.99592 * 23 12 11 29 29 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 30 30 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 31 31 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 32 32 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 33 33 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 34 34 H 1.08993 * 109.47474 * 185.00194 * 4 3 2 35 35 H 1.09006 * 109.47439 * 305.00470 * 4 3 2 36 36 H 1.09000 * 109.47146 * 300.00103 * 6 5 4 37 37 H 1.09002 * 109.47533 * 59.99959 * 6 5 4 38 38 H 1.09001 * 109.46589 * 185.00127 * 7 6 5 39 39 H 1.09002 * 109.46889 * 304.99627 * 7 6 5 40 40 H 1.00904 * 111.00143 * 56.04150 * 8 7 6 41 41 H 1.00898 * 111.00008 * 180.02562 * 8 7 6 42 42 H 0.97000 * 119.99555 * 0.02562 * 11 9 2 43 43 H 1.09003 * 109.46777 * 55.00337 * 14 12 11 44 44 H 1.09002 * 109.47113 * 174.99707 * 14 12 11 45 45 H 0.96992 * 120.00199 * 179.97438 * 18 17 15 46 46 H 1.07997 * 119.99481 * 0.02562 * 24 23 12 47 47 H 1.07997 * 120.00030 * 180.27346 * 25 24 23 48 48 H 1.08008 * 119.99574 * 179.83117 * 26 25 24 49 49 H 1.08001 * 120.00081 * 179.97438 * 27 26 25 50 50 H 1.08007 * 120.00042 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3210 0.7723 2.0813 6 6 3.6241 1.0931 3.4405 7 6 4.5562 0.0273 4.0204 8 7 5.8442 0.0669 3.3152 9 6 2.1389 -1.1672 -0.0057 10 8 3.3547 -1.1672 -0.0062 11 7 1.4650 -2.3344 -0.0110 12 6 2.1974 -3.6031 -0.0166 13 1 3.1081 -3.4995 0.5733 14 6 1.3202 -4.7012 0.5880 15 6 1.0633 -4.3957 2.0411 16 1 1.4833 -3.5069 2.4885 17 6 0.2912 -5.2501 2.7992 18 7 -0.2207 -6.3322 2.2543 19 14 -0.0267 -4.8718 4.6007 20 1 -1.2573 -4.0498 4.7241 21 1 -0.2027 -6.1419 5.3496 22 1 1.1270 -4.1230 5.1603 23 6 2.5559 -3.9699 -1.4337 24 6 1.6451 -3.7628 -2.4528 25 6 1.9756 -4.0951 -3.7533 26 6 3.2135 -4.6430 -4.0333 27 6 4.1223 -4.8549 -3.0136 28 6 3.7934 -4.5186 -1.7137 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3633 -0.8875 -0.5181 32 1 3.1499 1.1384 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 2.9182 2.6958 1.4439 35 1 1.5063 1.7548 1.9816 36 1 4.1139 2.0659 3.4837 37 1 2.7020 1.1245 4.0208 38 1 4.7162 0.2227 5.0807 39 1 4.1042 -0.9569 3.8965 40 1 6.2531 0.9883 3.3606 41 1 6.4777 -0.6286 3.6799 42 1 0.4950 -2.3343 -0.0110 43 1 0.3717 -4.7445 0.0526 44 1 1.8296 -5.6611 0.5030 45 1 -0.7636 -6.9335 2.7876 46 1 0.6768 -3.3379 -2.2334 47 1 1.2657 -3.9293 -4.5501 48 1 3.4707 -4.9051 -5.0490 49 1 5.0892 -5.2834 -3.2324 50 1 4.5036 -4.6841 -0.9170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599922160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:52 Heat of formation + Delta-G solvation = -42.310102 kcal Electronic energy + Delta-G solvation = -30323.318232 eV Core-core repulsion = 26350.862889 eV Total energy + Delta-G solvation = -3972.455343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.76366 -38.62538 -37.74022 -35.57556 -34.69799 -34.16498 -32.63023 -31.14877 -30.36125 -29.56878 -28.54308 -27.42437 -26.20390 -24.76325 -22.69691 -22.14868 -21.84798 -21.80835 -19.99290 -19.14151 -17.64988 -16.81824 -16.48540 -16.34830 -16.05730 -15.73230 -15.56388 -14.91186 -14.62922 -14.57043 -14.48095 -13.94324 -13.62117 -13.38509 -13.30535 -13.11046 -12.95965 -12.84136 -12.50109 -12.34149 -12.28122 -12.02223 -11.86339 -11.59383 -11.41093 -11.40428 -11.05026 -10.82228 -10.71447 -10.63971 -10.53001 -10.30026 -9.66209 -9.39537 -9.24760 -9.18243 -8.51549 -8.43489 -8.37379 -8.33583 -8.07953 -7.98324 -6.02222 -4.03981 1.91371 1.93040 3.20194 3.29094 3.36406 3.40935 3.83096 4.04785 4.31545 4.44978 4.63350 4.66326 5.06636 5.18736 5.24641 5.27015 5.31987 5.34484 5.37581 5.39366 5.41281 5.43446 5.49885 5.53520 5.61360 5.67986 5.69841 5.85817 6.03930 6.05652 6.07776 6.08659 6.31849 6.49406 6.55299 6.73971 6.85585 6.96433 6.98373 7.16801 7.19104 7.27982 7.45342 7.51794 7.53842 7.55974 7.62354 7.82254 7.96249 8.36127 8.71442 9.02525 9.41382 9.59953 11.08599 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006614 B = 0.005337 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4232.692860 B = 5244.877611 C = 7522.362838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.637 5.637 3 C 0.141 3.859 4 C 0.042 3.958 5 O -0.340 6.340 6 C 0.065 3.935 7 C 0.065 3.935 8 N -0.834 5.834 9 C 0.706 3.294 10 O -0.570 6.570 11 N -0.720 5.720 12 C 0.203 3.797 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.068 4.068 24 C -0.106 4.106 25 C -0.127 4.127 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.045 0.955 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.332 0.668 41 H 0.340 0.660 42 H 0.393 0.607 43 H 0.022 0.978 44 H 0.033 0.967 45 H 0.260 0.740 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 14.736 -4.666 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.376 5.376 3 C 0.016 3.984 4 C -0.037 4.037 5 O -0.258 6.258 6 C -0.013 4.013 7 C -0.066 4.066 8 N -0.364 5.364 9 C 0.408 3.592 10 O -0.446 6.446 11 N -0.374 5.374 12 C 0.098 3.902 13 H 0.104 0.896 14 C -0.013 4.013 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.069 4.069 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.155 4.155 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.228 0.772 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.130 0.870 49 H 0.133 0.867 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.095 14.193 -5.351 15.711 hybrid contribution -0.665 0.653 2.235 2.421 sum 3.430 14.846 -3.117 15.553 Atomic orbital electron populations 1.21651 0.80608 1.02320 1.01529 1.46883 1.05615 1.05054 1.80077 1.21219 0.98128 0.84490 0.94521 1.22962 0.93344 0.92243 0.95135 1.88318 1.66360 1.47700 1.23375 1.22443 0.97182 0.96863 0.84802 1.21758 0.90540 1.00806 0.93465 1.58477 1.05585 1.09583 1.62760 1.15848 0.85466 0.80197 0.77733 1.90917 1.11156 1.85755 1.56743 1.45239 1.09460 1.04129 1.78584 1.20052 0.97024 0.83302 0.89836 0.89603 1.19384 0.94202 0.92246 0.95503 1.21157 1.30959 1.08116 0.94771 0.92335 1.24977 0.95972 0.95067 0.98210 1.69963 1.34462 1.12662 1.36257 0.86626 0.78484 0.77596 0.85488 1.20836 1.21314 1.19949 1.20649 0.93361 0.95959 0.96938 1.20869 0.99112 1.00109 0.92386 1.21012 0.96722 1.00293 0.96454 1.20958 0.94572 1.01428 0.98571 1.21023 0.99162 1.00835 0.93128 1.21021 0.96290 0.98781 0.96449 0.93046 0.91652 0.91444 0.89132 0.89939 0.93525 0.94006 0.94409 0.93713 0.94870 0.89666 0.85595 0.84744 0.77218 0.95966 0.94844 0.93013 0.86833 0.86948 0.87013 0.86740 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.25 59.85 0.61 1.59 16 2 N -0.64 -9.74 2.86 -187.35 -0.53 -10.27 16 3 C 0.14 1.83 5.90 -4.04 -0.02 1.81 16 4 C 0.04 0.54 6.28 37.16 0.23 0.77 16 5 O -0.34 -5.69 9.10 -42.54 -0.39 -6.07 16 6 C 0.06 0.87 6.22 37.16 0.23 1.11 16 7 C 0.07 0.90 7.17 -3.83 -0.03 0.87 16 8 N -0.83 -11.21 9.57 -10.37 -0.10 -11.31 16 9 C 0.71 13.90 7.87 -86.92 -0.68 13.21 16 10 O -0.57 -13.29 14.81 -2.02 -0.03 -13.32 16 11 N -0.72 -14.09 3.91 -59.82 -0.23 -14.33 16 12 C 0.20 4.40 2.11 -69.09 -0.15 4.26 16 13 H 0.09 2.08 7.44 -51.93 -0.39 1.70 16 14 C 0.02 0.60 4.49 -27.89 -0.13 0.47 16 15 C -0.51 -13.91 8.84 -34.44 -0.30 -14.21 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.07 -1.34 4.91 -104.62 -0.51 -1.85 16 24 C -0.11 -1.90 9.32 -39.58 -0.37 -2.27 16 25 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 26 C -0.14 -2.08 10.05 -39.59 -0.40 -2.48 16 27 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 16 28 C -0.11 -1.99 9.67 -39.58 -0.38 -2.37 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 31 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 32 H 0.09 1.39 7.41 -51.93 -0.39 1.00 16 33 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.33 3.67 8.99 -39.29 -0.35 3.31 16 41 H 0.34 4.01 9.08 -39.29 -0.36 3.66 16 42 H 0.39 7.14 6.33 -40.82 -0.26 6.88 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.11 1.91 7.73 -52.49 -0.41 1.51 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 49 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 50 H 0.12 2.17 8.04 -52.48 -0.42 1.74 16 LS Contribution 413.69 15.07 6.23 6.23 Total: -1.00 -34.75 413.69 -10.46 -45.20 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -8.33 Total: 15.11 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.79 Total: -2.34 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.13 Total: -61.18 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.42 Total: -19.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.75 -10.46 -45.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599922160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.893 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds