Wall clock time and date at job start Tue Mar 31 2020 18:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 O 1.42902 * 109.46932 * 65.00024 * 4 3 2 6 6 C 1.42900 * 114.00007 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47002 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.47465 * 64.99961 * 7 6 5 9 9 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 10 10 O 1.21583 * 119.99943 * 179.97438 * 9 2 1 11 11 N 1.34777 * 120.00128 * 359.97438 * 9 2 1 12 12 C 1.46494 * 120.00401 * 180.02562 * 11 9 2 13 13 H 1.09000 * 109.46707 * 35.00079 * 12 11 9 14 14 C 1.52996 * 109.47500 * 155.00136 * 12 11 9 15 15 C 1.50695 * 109.47401 * 295.00243 * 14 12 11 16 16 H 1.08003 * 119.99621 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00380 * 179.97438 * 15 14 12 18 18 N 1.31521 * 120.00062 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00301 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46763 * 90.00323 * 19 17 15 21 21 H 1.48493 * 109.47220 * 210.00186 * 19 17 15 22 22 H 1.48500 * 109.46999 * 330.00322 * 19 17 15 23 23 C 1.50703 * 109.47225 * 275.00579 * 12 11 9 24 24 C 1.38242 * 119.99836 * 319.72194 * 23 12 11 25 25 C 1.38236 * 119.99858 * 179.78481 * 24 23 12 26 26 C 1.38236 * 119.99671 * 0.44691 * 25 24 23 27 27 C 1.38227 * 120.00461 * 359.80789 * 26 25 24 28 28 C 1.38230 * 120.00362 * 139.99592 * 23 12 11 29 29 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 30 30 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 31 31 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 32 32 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 33 33 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 34 34 H 1.08993 * 109.47474 * 185.00194 * 4 3 2 35 35 H 1.09006 * 109.47439 * 305.00470 * 4 3 2 36 36 H 1.09000 * 109.47146 * 300.00103 * 6 5 4 37 37 H 1.09002 * 109.47533 * 59.99959 * 6 5 4 38 38 H 1.09001 * 109.46589 * 185.00127 * 7 6 5 39 39 H 1.09002 * 109.46889 * 304.99627 * 7 6 5 40 40 H 1.00904 * 111.00143 * 56.04150 * 8 7 6 41 41 H 1.00898 * 111.00008 * 180.02562 * 8 7 6 42 42 H 0.97000 * 119.99555 * 0.02562 * 11 9 2 43 43 H 1.09003 * 109.46777 * 55.00337 * 14 12 11 44 44 H 1.09002 * 109.47113 * 174.99707 * 14 12 11 45 45 H 0.96992 * 120.00199 * 179.97438 * 18 17 15 46 46 H 1.07997 * 119.99481 * 0.02562 * 24 23 12 47 47 H 1.07997 * 120.00030 * 180.27346 * 25 24 23 48 48 H 1.08008 * 119.99574 * 179.83117 * 26 25 24 49 49 H 1.08001 * 120.00081 * 179.97438 * 27 26 25 50 50 H 1.08007 * 120.00042 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 8 3.3210 0.7723 2.0813 6 6 3.6241 1.0931 3.4405 7 6 4.5562 0.0273 4.0204 8 7 5.8442 0.0669 3.3152 9 6 2.1389 -1.1672 -0.0057 10 8 3.3547 -1.1672 -0.0062 11 7 1.4650 -2.3344 -0.0110 12 6 2.1974 -3.6031 -0.0166 13 1 3.1081 -3.4995 0.5733 14 6 1.3202 -4.7012 0.5880 15 6 1.0633 -4.3957 2.0411 16 1 1.4833 -3.5069 2.4885 17 6 0.2912 -5.2501 2.7992 18 7 -0.2207 -6.3322 2.2543 19 14 -0.0267 -4.8718 4.6007 20 1 -1.2573 -4.0498 4.7241 21 1 -0.2027 -6.1419 5.3496 22 1 1.1270 -4.1230 5.1603 23 6 2.5559 -3.9699 -1.4337 24 6 1.6451 -3.7628 -2.4528 25 6 1.9756 -4.0951 -3.7533 26 6 3.2135 -4.6430 -4.0333 27 6 4.1223 -4.8549 -3.0136 28 6 3.7934 -4.5186 -1.7137 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 0.8925 -0.5094 31 1 -0.3633 -0.8875 -0.5181 32 1 3.1499 1.1384 -0.5139 33 1 1.6085 2.0284 -0.5138 34 1 2.9182 2.6958 1.4439 35 1 1.5063 1.7548 1.9816 36 1 4.1139 2.0659 3.4837 37 1 2.7020 1.1245 4.0208 38 1 4.7162 0.2227 5.0807 39 1 4.1042 -0.9569 3.8965 40 1 6.2531 0.9883 3.3606 41 1 6.4777 -0.6286 3.6799 42 1 0.4950 -2.3343 -0.0110 43 1 0.3717 -4.7445 0.0526 44 1 1.8296 -5.6611 0.5030 45 1 -0.7636 -6.9335 2.7876 46 1 0.6768 -3.3379 -2.2334 47 1 1.2657 -3.9293 -4.5501 48 1 3.4707 -4.9051 -5.0490 49 1 5.0892 -5.2834 -3.2324 50 1 4.5036 -4.6841 -0.9170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599922160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:51 Heat of formation + Delta-G solvation = -66.182776 kcal Electronic energy + Delta-G solvation = -30324.353429 eV Core-core repulsion = 26350.862889 eV Total energy + Delta-G solvation = -3973.490540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22741 -39.95020 -38.89863 -36.99588 -36.25480 -35.30398 -34.66798 -32.57952 -31.67757 -30.78877 -30.30055 -28.50633 -27.39726 -26.54068 -23.98052 -23.71302 -23.23854 -22.92611 -21.49349 -20.63378 -19.04578 -18.51780 -17.85498 -17.59106 -17.44383 -16.99414 -16.84905 -16.50322 -16.18948 -15.91763 -15.81351 -15.14550 -14.92054 -14.78561 -14.55628 -14.43460 -14.27648 -14.15481 -14.02813 -13.77013 -13.64044 -13.40171 -13.32310 -12.91353 -12.86507 -12.64596 -12.61144 -12.47830 -12.36782 -12.11691 -11.83675 -11.78856 -11.54390 -11.30445 -10.92116 -10.57466 -10.39912 -9.90515 -9.72073 -9.54624 -9.49707 -9.32055 -8.19313 -6.28561 0.55692 0.59558 1.36023 1.38185 1.49100 1.89706 2.39477 2.48920 2.88513 2.98398 3.12808 3.29975 3.64591 4.03436 4.05427 4.07284 4.20338 4.23678 4.26182 4.30824 4.33422 4.34927 4.45739 4.49043 4.52692 4.53346 4.64554 4.69368 4.72323 4.80239 4.83737 4.93108 4.94996 5.01830 5.16611 5.23266 5.34402 5.45625 5.64478 5.66377 5.70504 5.73984 5.80195 5.98581 6.15223 6.19649 6.20355 6.24678 6.53666 6.63035 6.83073 7.24082 7.39796 7.90217 8.91569 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006614 B = 0.005337 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4232.692860 B = 5244.877611 C = 7522.362838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.632 5.632 3 C 0.137 3.863 4 C 0.038 3.962 5 O -0.384 6.384 6 C 0.062 3.938 7 C 0.065 3.935 8 N -0.852 5.852 9 C 0.701 3.299 10 O -0.614 6.614 11 N -0.717 5.717 12 C 0.222 3.778 13 H 0.047 0.953 14 C 0.040 3.960 15 C -0.523 4.523 16 H 0.046 0.954 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.955 3.045 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.276 1.276 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.123 4.123 28 C -0.134 4.134 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.347 0.653 41 H 0.346 0.654 42 H 0.399 0.601 43 H 0.011 0.989 44 H 0.002 0.998 45 H 0.264 0.736 46 H 0.118 0.882 47 H 0.147 0.853 48 H 0.152 0.848 49 H 0.143 0.857 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 16.772 -5.768 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.370 5.370 3 C 0.014 3.986 4 C -0.040 4.040 5 O -0.303 6.303 6 C -0.015 4.015 7 C -0.065 4.065 8 N -0.384 5.384 9 C 0.402 3.598 10 O -0.493 6.493 11 N -0.371 5.371 12 C 0.116 3.884 13 H 0.065 0.935 14 C 0.003 3.997 15 C -0.561 4.561 16 H 0.064 0.936 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.780 3.220 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.097 4.097 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.141 4.141 28 C -0.153 4.153 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.235 0.765 43 H 0.030 0.970 44 H 0.021 0.979 45 H 0.073 0.927 46 H 0.136 0.864 47 H 0.165 0.835 48 H 0.170 0.830 49 H 0.161 0.839 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.033 16.278 -6.454 17.771 hybrid contribution -0.314 0.034 2.513 2.533 sum 2.718 16.312 -3.941 17.000 Atomic orbital electron populations 1.21888 0.78205 1.04320 1.02073 1.46958 1.07156 1.04270 1.78621 1.21510 0.97588 0.84361 0.95183 1.23135 0.93539 0.92779 0.94533 1.88283 1.67386 1.49717 1.24881 1.22566 0.97571 0.97643 0.83728 1.21719 0.90688 0.98857 0.95278 1.58420 1.05820 1.10816 1.63365 1.16041 0.85078 0.81144 0.77492 1.90878 1.13214 1.86544 1.58677 1.45041 1.09544 1.03724 1.78836 1.19466 0.94649 0.83338 0.90978 0.93514 1.19110 0.93752 0.92064 0.94789 1.21316 1.30963 1.07797 0.95988 0.93558 1.25745 0.95609 0.94776 1.02527 1.70070 1.35026 1.13487 1.37960 0.85609 0.78607 0.77656 0.80128 1.19278 1.20679 1.20116 1.20516 0.94843 0.98232 0.96084 1.21014 0.98954 1.00645 0.93124 1.21426 0.97713 0.98921 0.96118 1.21451 0.93712 0.99522 1.00079 1.21365 1.00728 1.00012 0.92023 1.21151 0.96105 1.00140 0.97883 0.93162 0.87425 0.91727 0.91973 0.85102 0.90727 0.93027 0.91855 0.93043 0.92028 0.93965 0.83971 0.84106 0.76504 0.97032 0.97924 0.92715 0.86431 0.83508 0.83015 0.83935 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 10.25 127.77 1.31 2.99 16 2 N -0.63 -18.96 2.86 -864.92 -2.47 -21.43 16 3 C 0.14 3.36 5.90 86.38 0.51 3.87 16 4 C 0.04 0.91 6.28 71.98 0.45 1.37 16 5 O -0.38 -12.94 9.10 -141.99 -1.29 -14.23 16 6 C 0.06 1.64 6.22 71.98 0.45 2.09 16 7 C 0.07 1.85 7.17 86.30 0.62 2.46 16 8 N -0.85 -23.43 9.57 -186.72 -1.79 -25.22 16 9 C 0.70 28.67 7.87 179.05 1.41 30.07 16 10 O -0.61 -30.33 14.81 3.01 0.04 -30.28 16 11 N -0.72 -29.53 3.91 -461.43 -1.80 -31.34 16 12 C 0.22 10.38 2.11 44.25 0.09 10.47 16 13 H 0.05 2.51 7.44 -2.39 -0.02 2.49 16 14 C 0.04 2.14 4.49 29.84 0.13 2.28 16 15 C -0.52 -29.77 8.84 25.60 0.23 -29.55 16 16 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 17 C 0.01 0.68 5.46 84.65 0.46 1.14 16 18 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 19 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C -0.10 -3.97 4.91 -19.86 -0.10 -4.07 16 24 C -0.12 -4.27 9.32 22.27 0.21 -4.06 16 25 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 26 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 27 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 28 C -0.13 -5.25 9.67 22.27 0.22 -5.04 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.44 7.89 -2.39 -0.02 1.42 16 31 H 0.06 1.44 6.36 -2.39 -0.02 1.42 16 32 H 0.06 1.91 7.41 -2.39 -0.02 1.89 16 33 H 0.13 1.90 7.89 -2.39 -0.02 1.88 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.35 7.53 8.99 -89.69 -0.81 6.73 16 41 H 0.35 8.49 9.08 -89.70 -0.81 7.68 16 42 H 0.40 15.08 6.33 -92.71 -0.59 14.49 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.12 3.99 7.73 -2.91 -0.02 3.96 16 47 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 48 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 49 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 50 H 0.11 4.29 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -80.57 413.69 0.40 -80.17 By element: Atomic # 1 Polarization: 48.12 SS G_CDS: -1.26 Total: 46.86 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.66 Total: 3.63 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -5.78 Total: -132.80 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.25 Total: -44.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -80.57 0.40 -80.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599922160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.985 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds